genome.fa.s159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000159.1 Hibiscus syriacus cultivar Beakdansim tig00000281_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85810

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740--1922	20	9.1	20	83	6	128	32	20	18	29	1.96
1740--1865	40	3.2	40	85	5	141	34	19	19	26	1.96
1833--1907	19	3.8	19	82	8	87	24	21	14	40	1.90
1751--1922	60	2.9	60	81	6	179	32	20	18	29	1.96
2397--2447	19	2.8	18	82	5	57	47	0	3	49	1.20
8559--8664	30	3.6	29	76	8	106	16	17	9	55	1.67
15027--15106	27	2.8	27	79	7	79	28	15	12	43	1.82
15350--15527	65	2.7	66	77	5	184	27	21	13	37	1.91
15548--15613	28	2.4	28	94	0	123	25	9	15	50	1.73
15634--15886	131	1.9	131	82	0	317	26	32	16	23	1.96
15634--15915	131	2.1	131	80	3	314	27	32	16	23	1.96
16158--16217	3	21.0	3	78	21	67	31	0	0	68	0.90
16158--16216	19	3.3	18	81	18	70	30	0	0	69	0.89
18780--19498	254	2.8	257	80	6	734	32	16	10	40	1.83
26939--27006	23	3.0	23	82	0	82	27	23	23	25	2.00
27021--27238	103	2.1	103	95	1	393	37	22	12	26	1.91
36856--37117	44	5.9	44	76	10	230	46	8	21	24	1.78
37115--37212	42	2.2	44	76	15	105	52	5	18	24	1.66
37124--37213	43	2.1	44	81	10	105	52	5	17	24	1.66
46600--46682	23	3.8	21	77	16	80	24	30	24	21	1.99
52747--52793	23	2.0	23	91	0	76	42	6	14	36	1.72
52703--52869	87	1.9	86	91	1	271	41	10	12	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53178--53219	18	2.3	19	84	12	61	61	4	9	23	1.45
54865--54914	21	2.5	20	75	12	57	8	14	6	72	1.27
58738--58775	18	2.2	18	90	4	60	63	5	10	21	1.46
59881--60472	199	3.0	199	82	6	691	30	15	14	38	1.88
64640--64780	3	47.0	3	95	0	255	64	0	2	33	1.05
83471--83514	2	24.0	2	82	17	60	50	0	0	50	1.00
84787--84820	16	2.1	16	88	0	50	38	17	11	32	1.86

Tables:   1

The End!