Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001590.1 Hibiscus syriacus cultivar Beakdansim tig00003170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49942

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1116--1160
22
2.0
23
86
4
65
46
11
6
35
1.66
1781--1960
83
2.1
85
86
2
256
26
17
22
33
1.96
1898--2026
68
1.9
66
88
3
195
23
18
21
36
1.95
3347--3398
19
2.6
21
90
6
81
46
7
13
32
1.72
6691--6715
11
2.3
11
100
0
50
0
20
0
80
0.72
7457--7508
19
2.6
21
90
6
81
46
7
13
32
1.72
9604--9797
98
2.0
99
92
1
327
30
18
18
32
1.94
12571--12607
19
1.9
19
94
0
65
72
0
18
8
1.08
15041--15110
5
13.8
5
77
19
58
74
1
5
18
1.09
15255--15307
23
2.3
23
83
6
63
58
1
18
20
1.49
22470--22521
26
2.0
26
88
7
79
30
13
11
44
1.79
24792--24866
10
7.7
10
69
21
61
57
21
10
10
1.62
24796--24860
16
4.1
16
91
0
112
56
23
10
9
1.61
25611--25666
14
4.3
14
76
17
66
53
23
12
10
1.69
25591--25665
24
3.1
24
86
3
98
56
20
10
13
1.66
28098--28163
15
4.4
15
84
0
96
39
6
16
37
1.74
28098--28179
30
2.8
30
88
1
112
41
7
17
34
1.77
28092--28180
15
6.0
15
73
12
67
43
6
17
31
1.75
28166--28231
20
3.3
20
95
0
114
43
10
15
30
1.80
28560--28650
28
3.2
28
75
17
82
51
2
1
45
1.20
28687--28735
21
2.3
20
80
13
53
53
0
0
46
1.00
28928--29041
42
2.7
42
93
0
192
47
15
18
18
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33566--33625
32
1.9
32
93
3
104
43
8
10
38
1.68
34288--34348
30
2.1
29
84
9
79
50
0
1
47
1.10
34566--34619
19
2.8
19
88
0
90
14
11
12
61
1.58
34941--35009
24
2.9
25
79
18
76
52
2
1
43
1.25
35024--35110
14
6.2
14
71
9
61
49
1
1
48
1.16
35024--35113
28
3.3
28
75
7
87
48
1
1
48
1.15
35053--35121
30
2.3
32
83
14
85
47
0
1
50
1.09
35035--35135
28
3.2
32
82
13
95
49
0
0
48
1.14
35030--35135
36
3.0
36
76
14
105
49
0
0
49
1.14
35766--35851
14
6.2
14
68
11
52
50
1
1
47
1.16
35795--35862
30
2.3
32
82
12
83
48
0
1
50
1.10
33751--36786
772
4.0
749
85
8
3978
45
8
8
38
1.64
36541--36635
30
3.2
30
79
11
81
47
2
1
49
1.20
36732--37220
200
2.5
198
86
4
680
40
14
15
29
1.86
37225--37353
64
2.0
64
98
0
249
33
15
10
41
1.81
37944--38016
34
2.2
34
87
4
114
28
15
4
52
1.61
37986--38051
25
2.6
26
87
4
89
22
12
4
60
1.50
40265--40351
40
2.2
40
95
0
156
37
9
26
26
1.86
41946--41983
20
1.9
20
94
0
67
18
15
34
31
1.92
41812--41985
91
1.9
91
85
4
244
29
16
25
29
1.96
42624--42662
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!