Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001591.1 Hibiscus syriacus cultivar Beakdansim tig00003171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45880

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2354--2407
14
4.3
14
78
21
66
7
14
25
51
1.68
2367--2414
10
4.4
10
78
19
51
8
12
25
54
1.65
2364--2414
24
2.1
24
100
0
102
7
13
23
54
1.65
2372--2427
24
2.3
24
90
0
85
12
10
19
57
1.64
3418--3518
10
10.7
10
71
23
85
9
11
20
57
1.63
3424--3514
16
6.1
16
77
14
113
8
12
21
57
1.62
3418--3518
26
3.7
26
79
14
112
9
11
20
57
1.63
3418--3517
42
2.4
42
88
6
157
10
12
21
57
1.63
3584--3616
16
2.1
16
100
0
66
6
12
24
57
1.57
10898--10940
21
2.0
22
86
4
61
67
4
13
13
1.38
10889--10960
25
2.8
24
77
10
72
70
5
8
15
1.30
19667--19724
29
2.0
29
90
6
91
34
27
8
29
1.87
19850--19935
35
2.5
35
82
0
91
40
19
1
38
1.60
19904--19946
21
2.0
21
100
0
86
46
13
0
39
1.44
20069--20102
16
2.0
18
88
11
54
26
2
5
64
1.30
22433--22757
34
9.6
34
79
15
302
45
3
4
45
1.41
22522--22570
2
24.5
2
91
8
82
51
2
0
46
1.12
22458--22767
65
4.6
68
78
14
265
46
3
4
45
1.40
22562--22767
69
3.1
69
87
11
263
46
4
4
44
1.44
22827--22874
9
5.4
9
82
5
62
10
2
0
87
0.62
22827--22874
14
3.5
13
86
13
69
10
2
0
87
0.62
22820--22872
26
2.0
26
89
7
81
11
5
0
83
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24799--24844
17
2.9
16
84
12
60
52
0
2
45
1.13
25585--25658
20
3.7
19
76
7
67
32
21
21
24
1.98
25486--25779
139
2.1
140
92
0
491
34
18
16
31
1.93
25724--25763
21
2.0
21
85
5
55
30
25
17
27
1.97
25366--26002
259
2.6
249
85
7
841
34
18
15
31
1.92
25635--26002
119
3.1
119
89
0
556
33
18
15
32
1.92
25849--25897
20
2.5
20
82
0
53
30
16
24
28
1.96
26576--26619
20
2.1
21
91
8
72
36
15
11
36
1.84
26712--26820
57
1.9
56
92
1
182
30
18
9
42
1.81
34395--34431
14
2.4
16
86
13
51
54
0
0
45
1.00
34392--34431
17
2.4
17
87
8
55
55
0
0
45
0.99
36708--36837
59
2.2
59
80
4
136
37
11
13
37
1.80
38422--38489
31
2.2
31
84
5
84
51
2
0
45
1.16
43751--43811
31
2.0
31
87
12
90
39
18
3
39
1.67
44657--44694
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!