genome.fa.s1592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001592.1 Hibiscus syriacus cultivar Beakdansim tig00003172_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193584

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3039--3078	14	2.8	14	96	3	71	40	15	15	30	1.87
7955--8011	20	2.8	20	94	0	96	26	26	17	29	1.97
10736--10769	3	11.3	3	100	0	68	32	0	0	67	0.91
15586--16056	203	2.3	203	89	2	705	28	19	17	34	1.95
17280--17367	24	3.7	24	85	0	122	50	15	14	19	1.79
17273--17364	48	1.9	48	93	0	157	51	15	15	18	1.77
17275--17344	12	5.8	12	74	12	63	51	17	15	15	1.77
17273--17377	48	2.2	48	87	3	149	49	15	16	19	1.80
19966--20043	35	2.2	35	88	0	120	56	12	3	26	1.54
22760--22786	9	3.0	9	100	0	54	44	0	11	44	1.39
26213--26249	18	2.0	20	89	10	60	32	0	2	64	1.07
29293--29379	31	2.8	31	80	3	95	37	27	13	20	1.91
37394--37418	12	2.1	12	100	0	50	40	0	16	44	1.47
39011--39065	19	3.0	19	76	10	69	58	1	0	40	1.09
40615--40689	3	25.3	3	86	2	98	32	1	5	61	1.27
42281--42319	2	20.0	2	89	5	62	48	0	0	51	1.00
44232--44272	20	2.0	20	90	9	66	21	9	9	58	1.59
48069--48264	2	98.0	2	93	0	329	47	48	2	1	1.22
48254--48326	32	2.3	32	95	0	128	32	34	16	16	1.91
48755--49061	150	2.1	149	85	1	418	36	14	17	31	1.90
48894--51063	232	9.3	233	84	3	2652	31	15	17	34	1.92
49504--49544	20	2.1	19	90	4	64	26	26	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50866--51247	186	2.1	186	94	0	674	29	18	18	33	1.95
50402--51715	652	2.0	652	85	2	1748	30	16	17	35	1.92
50634--51481	418	2.0	417	86	3	1186	30	16	17	35	1.93
51052--51730	233	2.9	232	83	2	797	31	16	16	35	1.92
52000--52834	133	6.3	131	78	9	677	31	20	15	32	1.94
52132--52834	265	2.7	263	79	6	672	32	20	14	32	1.93
54588--54718	65	2.0	65	89	10	205	24	12	22	41	1.88
58221--58390	88	2.0	86	90	2	268	43	7	11	37	1.69
68436--68498	30	2.1	31	96	3	119	55	15	15	12	1.69
68794--68835	21	2.0	21	86	9	59	50	2	11	35	1.52
72618--72681	21	3.0	21	79	4	65	25	35	25	14	1.93
72662--72701	21	1.9	21	94	0	71	27	40	25	7	1.82
83013--83076	27	2.4	27	100	0	128	26	21	21	29	1.99
85899--85947	22	2.3	22	89	3	73	36	6	10	46	1.63
89216--89302	35	2.5	34	80	12	97	57	8	6	27	1.53
89297--89321	13	1.9	13	100	0	50	72	8	0	20	1.10
89292--89379	33	2.6	34	94	1	151	68	12	2	17	1.31
90129--90179	20	2.5	20	93	0	93	21	25	33	19	1.97
92946--92986	21	2.0	21	90	0	64	9	24	39	26	1.86
92969--93029	20	2.9	21	85	7	70	16	26	32	24	1.96
99160--99200	3	13.7	3	84	0	55	4	31	26	36	1.78
99485--99526	20	2.1	20	100	0	84	28	14	47	9	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100098--100156	29	2.0	31	90	6	95	67	3	1	27	1.16
109157--109301	60	2.4	60	92	0	254	35	11	17	36	1.85
110018--110114	51	1.9	51	93	0	167	16	26	8	48	1.74
109918--110267	167	2.2	159	84	6	443	20	20	17	40	1.91
111588--111617	15	2.0	15	93	0	51	3	26	33	36	1.73
114727--114777	19	2.7	20	82	14	63	58	1	0	39	1.09
115983--116025	21	2.0	21	90	0	68	32	27	23	16	1.96
116545--116762	103	2.1	103	95	0	391	25	12	25	37	1.91
116780--116846	23	2.9	23	82	4	82	23	25	25	25	2.00
122644--122686	21	2.0	21	90	0	68	32	27	23	16	1.96
122711--122751	20	2.0	20	90	0	64	24	31	34	9	1.88
123209--123426	103	2.1	103	95	0	391	23	12	25	38	1.91
123443--123510	23	3.0	23	82	4	84	23	25	26	25	2.00
124204--124654	67	6.8	66	86	6	583	39	14	18	27	1.89
124340--124690	30	10.4	36	68	18	171	41	14	17	26	1.88
124206--124654	132	3.4	133	87	5	597	39	14	18	27	1.89
125012--125122	36	3.1	34	84	10	134	40	10	17	31	1.84
125097--125217	60	2.0	60	85	3	163	42	9	16	32	1.80
132923--132947	13	1.9	13	100	0	50	28	16	16	40	1.89
137868--138324	42	10.8	41	88	5	630	31	24	25	18	1.97
137868--138324	84	5.4	84	93	2	724	31	24	25	18	1.97
139286--139368	10	8.5	10	75	16	68	31	25	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139286--139352	19	3.5	20	85	6	93	32	26	20	19	1.97
145343--145712	42	8.8	41	88	5	483	33	24	23	18	1.97
145343--145712	84	4.4	84	92	2	566	33	24	23	18	1.97
157505--157535	15	2.1	15	100	0	62	41	19	19	19	1.90
158460--158498	13	3.0	13	92	0	60	10	58	2	28	1.44
165784--165866	38	2.2	38	86	4	114	24	14	14	46	1.81
172128--172167	20	2.0	20	100	0	80	20	25	20	35	1.96
174425--174461	3	12.3	3	100	0	74	35	0	0	64	0.94
176104--176149	2	23.0	2	100	0	92	50	0	0	50	1.00
178662--178701	21	2.0	20	85	5	53	47	15	22	15	1.82
181243--181287	16	2.8	16	100	0	90	48	4	20	26	1.68
181221--181295	16	4.7	16	84	0	87	40	6	24	29	1.80
181414--181620	113	1.8	113	89	2	326	43	15	15	24	1.86
183823--183895	4	18.2	4	80	18	73	0	21	0	78	0.76
183833--183895	7	8.1	7	75	18	54	0	20	0	79	0.73
183823--183895	24	3.0	24	80	13	87	0	21	0	78	0.76
183826--183895	28	2.6	27	80	17	90	0	21	0	78	0.75
192136--192175	4	10.5	4	80	20	50	0	25	0	75	0.81
192136--192175	11	3.5	11	84	15	55	0	25	0	75	0.81
192138--192168	16	1.9	16	100	0	62	0	29	0	70	0.87

Tables:   1

The End!