Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001593.1 Hibiscus syriacus cultivar Beakdansim tig00003174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58539

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
839--989
74
2.0
76
91
6
245
37
7
22
32
1.83
1610--1658
18
2.6
18
87
6
62
32
12
30
24
1.92
10847--10871
12
2.1
12
100
0
50
32
0
16
52
1.44
12166--12251
43
2.0
43
82
8
104
30
18
23
27
1.98
12294--12358
20
3.3
20
68
12
62
23
23
13
40
1.90
12406--13153
124
6.1
124
86
1
993
26
19
15
38
1.91
12414--13144
370
2.0
371
87
2
1058
26
19
15
38
1.92
13069--13427
139
2.6
139
86
2
499
27
21
15
35
1.93
18024--18349
45
7.2
45
90
1
510
23
22
10
43
1.84
18130--18195
21
3.0
21
67
25
55
22
25
10
40
1.86
18783--18832
20
2.5
20
93
0
91
26
20
8
46
1.78
25020--25212
45
4.3
45
92
0
323
21
23
12
41
1.87
29445--29479
18
1.9
18
100
0
70
34
0
11
54
1.37
30863--30905
20
2.3
19
84
11
61
25
30
6
37
1.82
34385--34439
28
2.0
26
89
6
83
23
10
7
58
1.57
34377--34439
28
2.5
24
75
20
67
23
12
7
55
1.63
41914--42333
38
10.7
38
75
11
292
26
18
16
38
1.92
41914--42320
80
5.2
79
77
9
325
26
19
15
38
1.91
41916--42333
118
3.5
117
78
9
388
26
18
16
38
1.92
43545--43590
2
23.0
2
100
0
92
50
0
0
50
1.00
46716--46757
21
2.0
21
95
0
75
26
28
21
23
1.99
46975--47035
31
2.0
31
87
9
90
42
14
6
36
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46975--47034
30
1.9
32
90
6
97
43
15
5
36
1.68
55952--56035
36
2.4
36
90
6
127
41
22
17
17
1.90

Tables:   1

The End!