Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001595.1 Hibiscus syriacus cultivar Beakdansim tig00003177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60168
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:3294 original size:20 final size:22
Alignment explanation
Indices: 3269--3315 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
3259 TGTGTTTATT
*
3269 TTTTTACTATTT-TTGTTTT-A
1 TTTTTACTATTTGTTATTTTAA
*
3289 TTTTTATTATTTGTTATTTTAA
1 TTTTTACTATTTGTTATTTTAA
3311 TTTTT
1 TTTTT
3316 TAATTCGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
21 6 0.26
22 6 0.26
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (22 bp):
TTTTTACTATTTGTTATTTTAA
Found at i:6603 original size:271 final size:271
Alignment explanation
Indices: 6061--8282 Score: 2125
Period size: 271 Copynumber: 8.3 Consensus size: 271
6051 TAAACCGATC
* * *
6061 ACATTTAAAATGGAGAGTTCATAATGAGAAGAACTTATCCGACAGAGGGAGAAGAAATTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * *
6126 GAGAAGAACTTGTTCGACCTATCACTCGATTCATGGTATTTCAAATTAGTGACGCCTCGTTTGAG
66 GAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGAG
* * * * * *
6191 GGATTAATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCTGAAAGA-GGAGAGGAAGTT
131 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * *
6255 CATAATGAGAAGAGCTTGCTCGACCTATCACTCAATTCACAGT-ATTTCAAAAT-AGTGACGTAT
196 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTAATTTC-GAATCAGTGAC--CT
*
6318 CGCTTGATGGATTA
258 CGCTTGAGGGATTA
* * * *
6332 ACATTTCAAATGGAGAGTTCATGATGAGAAGAATTCATCCGACAGATGGAGAAAAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * *
6397 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCAAATAAGTGACACCTCGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGAG
* * * * * *
6462 GGATTAACATTTCAAATAGAAAGTTCAGAATGAGAAGAACTCATCCCACAGAGGGAGAAAAAATT
131 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * *
6527 CATAATTAGAAAAGCTTGTTTGACCTATCACTCGATTCACGGTAATTT-GAGTTAGTGATCCTCG
196 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTAATTTCGAATCAGTGA-CCTCG
*
6591 CTTAAGGGATTA
260 CTTGAGGGATTA
* * ***
6603 ACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCAACATTCAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * *
6668 GAGAAGAGTTTGTTCGACCTATCGCTCGATTCAAGACATTTCGAATCAGTGACGCCTTGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGAG
* * *
6733 GGATTAATATTTCAAATGGAGAGTTCATAATGAAAAGAACTCATCCGATAGAGGGAGAAGAAGTT
131 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* **
6798 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCA-GG-ATATTTCAAATCAGCAACGCCT
196 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTA-ATTTCGAATCAGTGA--CCT
6861 CGCTTGAGGGATTA
258 CGCTTGAGGGATTA
* *
6875 ACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAAGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * *
6940 GAGAAGAGCTTGTTCGAACTATCGCTCGATTCAAGATATTTC-GATCAGTGACACCTCGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGAG
* * * *
7004 GGATTAATC-TTTCACATGGAGAGTTCATAATGAGAAGAACTCGTCTGACAGAGGGAGAAAAAGT
131 GGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* ** * * *
7068 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTAAATTCA-TG-ACATTTTGAATCAGCGACGCC
195 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTA-ATTTCGAATCAGTGA--CC
7131 TCGCTTGAGGGATTA
257 TCGCTTGAGGGATTA
* * * * * *
7146 TCCTTTCAAATAGAGAGTTCATAATGAGAAGAAATCATCCAACAGAGGGAGAAGAAGTTCCTAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* ** * * *
7211 GAGAAGAGCTTGTTCAACCTATCGCTCGATTCATGACGTTTCGAATCAGTGTCGCCTTGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGAG
** * *
7276 GGATTAATTTTTCAAATGGAGAGTTCAAAATGAGAAGAAAC-CATCCGACTGAGGGAGAAGAAGT
131 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAG-AACTCATCCGACAGAGGGAGAAGAAGT
* * * *
7340 TCATAATGAGAAAAGCTTGTTCAACCTATCACTCGATTCAC-ATTATTTCGAATCAGTGATGCCT
195 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTAATTTCGAATCAGTGA--CCT
* *
7404 CACTTTAGGGATTA
258 CGCTTGAGGGATTA
* * *** *
7418 ACATTTCAAATGGAGAGTTCATAATAAAAAGAACTCATCCTTTAGAAGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * ** *
7483 GAGAAGAGCTTCTTCGACCTATCGCTCAATTCACGATATTTTGAATCAGTGACGCCTCGCTTTAG
66 GAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGAG
* * * * * * *
7548 GGATAAACATTTCAAATAGAGAGTTCATAATAAGAAGAACTCATTCTACAAAGGGAGAAGAAGAT
131 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * * *
7613 CATAATAAGAAGAGCTTGTTCGACTTATCGCTCAATTCA---TGA---C--AT-ATTGA-AT--C
196 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTAATTTCGAATCAGTGACCTCGC
*
7666 ---AGGGA--C
261 TTGAGGGATTA
* * * *
7672 ACCTTTGAAATGG-GTAGTTCATAATGAGAAGAACTCATTCGACAGAGGGAGAACAAGTTCATAA
1 ACATTTCAAATGGAG-AGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * *
7736 TGAGAAAAACTTGTTCAACCTATCGTTCGATTCGTGGTATTTCGAAA-CA-TCGATGCCTTGCTT
65 TGAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTC-AAATCAGT-GACGCCTCGCTT
* * * *
7799 GAGGGATTAAC-CTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCAACAGAGGGAGACGAA
128 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * * * *
7863 GTTCATAATGAGAAGAGCTTGTT-GACCTATAACTCGA-GCACTGT-ATTTTGATTCAGTAACAC
193 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTAATTTCGAATCAGTGAC-C
* * * *
7925 ATCACTTGTGGGTTTG
257 -TCGCTTGAGGGATTA
* * ** *
7941 ACATTTCAGAA-GGAGTGTTCATAATGAGAAGAACTCATCC--CATAATGAGAA-TAG--C-T--
1 ACATTTCA-AATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
** * * * ** * *
7997 T--------CTT-TAAGACCTATCACTCGATTAACGGCATTTCGAATCAGTGACACCTCGCTTGA
65 TGAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGA
* * * *
8053 GGGACTAACCTTTCAAAATGG-GAGTTCATAATGAGAAGAACTCATCTGACAAAGGGAGAAGAAG
130 GGGATTAACATTTC-AAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * ** ** * * *
8117 TTCATAATGAGAATAACTTGTTCGACCTATTGCTATATTCA---TAACACTTCGAATCAATAATG
194 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGT-A-ATTTCGAATCAGTGA--
* *
8179 CCT-GAATGGAGGGATTA
255 CCTCG-CTTGAGGGATTA
* * * * * *
8196 ATATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGGGGAAGACGTTTATAA
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGA-GGGAGAAGAAGTTCATAA
*
8260 TGAGAAGAACTTGTTCGACCTAT
65 TGAGAAGAGCTTGTTCGACCTAT
8283 TACTAGATTC
Statistics
Matches: 1602, Mismatches: 280, Indels: 137
0.79 0.14 0.07
Matches are distributed among these distances:
251 4 0.00
252 53 0.03
253 138 0.09
254 149 0.09
255 29 0.02
256 9 0.01
257 5 0.00
258 2 0.00
259 4 0.00
261 3 0.00
262 1 0.00
263 2 0.00
264 6 0.00
265 2 0.00
266 2 0.00
267 12 0.01
269 32 0.02
270 11 0.01
271 632 0.39
272 498 0.31
273 8 0.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (271 bp):
ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
GAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGATATTTCAAATCAGTGACGCCTCGCTTGAG
GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTAATTTCGAATCAGTGACCTCGC
TTGAGGGATTA
Found at i:6847 original size:407 final size:406
Alignment explanation
Indices: 6061--8282 Score: 2196
Period size: 407 Copynumber: 5.5 Consensus size: 406
6051 TAAACCGATC
* * *
6061 ACATTTAAAATGGAGAGTTCATAATGAGAAGAACTTATCCGACAGAGGGAGAAGAAATTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * *
6126 GAGAAGAA-CTTGTTCGACCTATCACTCGATTCATGGTATTTCAAATTAGTGACGCCTCGTTTGA
66 GAGAA-AAGCTTGTTCGACCTATCACTCGATTCACGGTATTTCGAATCAGTGA-TCCTCGCTTGA
* * * * * *
6190 GGGATTAATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATC-TGAAAGAGGAGAGGAAGT
129 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCTTCAGAG-GGAGAAGAAGT
* * * * **
6254 TCATAATGAGAAGAGCTTGCTCGACCTATCACTCAATTCACAG-TATTTCAAAAT-AGTGACGTA
193 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTCAATTCA-AGACATTTC-GAATCAGTGACGCC
* * * * * *
6317 TCGCTTGATGGATTAACATTTCAAATGGAGAGTTCATGATGAGAAGAATTCATCCGACAGATGGA
256 TCGCTTGAGGGATTAACATTTCAAATAGAGAGTTCATAATGAAAAGAACTCATCCGACAGAGGGA
* * *
6382 GAAAAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCAAATAAGT
321 GAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCAAATCAGT
6447 GACACCTCGCTTGAGGGATTA
386 GACACCTCGCTTGAGGGATTA
* * * * * *
6468 ACATTTCAAATAGAAAGTTCAGAATGAGAAGAACTCATCCCACAGAGGGAGAAAAAATTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * *
6533 TAGAAAAGCTTGTTTGACCTATCACTCGATTCACGGTAATTT-GAGTTAGTGATCCTCGCTTAAG
66 GAGAAAAGCTTGTTCGACCTATCACTCGATTCACGGT-ATTTCGAATCAGTGATCCTCGCTTGAG
* *
6597 GGATTAACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCAACATTCAGAGGGAGAAGAAGTT
130 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATC-TTCAGAGGGAGAAGAAGTT
* * *
6662 CATAATGAGAAGAGTTTGTTCGACCTATCGCTCGATTCAAGACATTTCGAATCAGTGACGCCTTG
194 CATAATGAGAAGAGCTTGTTCGACCTATCGCTCAATTCAAGACATTTCGAATCAGTGACGCCTCG
* * *
6727 CTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAAAAGAACTCATCCGATAGAGGGAGAA
259 CTTGAGGGATTAACATTTCAAATAGAGAGTTCATAATGAAAAGAACTCATCCGACAGAGGGAGAA
* * **
6792 GAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAGGATATTTCAAATCAGCAAC
324 GAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCAAATCAGTGAC
*
6857 GCCTCGCTTGAGGGATTA
389 ACCTCGCTTGAGGGATTA
* *
6875 ACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAAGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * * *
6940 GAGAAGAGCTTGTTCGAACTATCGCTCGATTCAAGATATTTCG-ATCAGTGACACCTCGCTTGAG
66 GAGAAAAGCTTGTTCGACCTATCACTCGATTCACGGTATTTCGAATCAGTGA-TCCTCGCTTGAG
* * * *
7004 GGATTAATC-TTTCACATGGAGAGTTCATAATGAGAAGAACTCGTCTGACAGAGGGAGAAAAAGT
130 GGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCT-TCAGAGGGAGAAGAAGT
* * * *
7068 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTAAATTCATGACATTTTGAATCAGCGACGCCTC
193 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTCAATTCAAGACATTTCGAATCAGTGACGCCTC
* * * * *
7133 GCTTGAGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAAATCATCCAACAGAGGGAGA
258 GCTTGAGGGATTAACATTTCAAATAGAGAGTTCATAATGAAAAGAACTCATCCGACAGAGGGAGA
* * * * * *
7198 AGAAGTTCCTAATGAGAAGAGCTTGTTCAACCTATCGCTCGATTCATGACGTTTCGAATCAGTGT
323 AGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCAAATCAGTGA
* *
7263 CGCCTTGCTTGAGGGATTA
388 CACCTCGCTTGAGGGATTA
** * *
7282 ATTTTTCAAATGGAGAGTTCAAAATGAGAAGAAAC-CATCCGACTGAGGGAGAAGAAGTTCATAA
1 ACATTTCAAATGGAGAGTTCATAATGAGAAG-AACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* ** * *
7346 TGAGAAAAGCTTGTTCAACCTATCACTCGATTCACATTATTTCGAATCAGTGATGCCTCACTTTA
65 TGAGAAAAGCTTGTTCGACCTATCACTCGATTCACGGTATTTCGAATCAGTGAT-CCTCGCTTGA
* * * *
7411 GGGATTAACATTTCAAATGGAGAGTTCATAATAAAAAGAACTCATCCTTTAGAAGGAGAAGAAGT
129 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-CTTCAGAGGGAGAAGAAGT
* * * *
7476 TCATAATGAGAAGAGCTTCTTCGACCTATCGCTCAATTCACGATATTTTGAATCAGTGACGCCTC
193 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTCAATTCAAGACATTTCGAATCAGTGACGCCTC
* * * * *
7541 GCTTTAGGGATAAACATTTCAAATAGAGAGTTCATAAT-AAGAAGAACTCATTCTACAAAGGGAG
258 GCTTGAGGGATTAACATTTCAAATAGAGAGTTCATAATGAA-AAGAACTCATCCGACAGAGGGAG
* * * * *
7605 AAGAAGATCATAATAAGAAGAGCTTGTTCGACTTATCGCTCAATTCATGACA--T---AT---TG
322 AAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCAAATCAGTG
*
7662 A-A--T--C---AGGGA--C
387 ACACCTCGCTTGAGGGATTA
* * * *
7672 ACCTTTGAAATGG-GTAGTTCATAATGAGAAGAACTCATTCGACAGAGGGAGAACAAGTTCATAA
1 ACATTTCAAATGGAG-AGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** ** * *
7736 TGAGAAAAACTTGTTCAACCTATCGTTCGATTCGTGGTATTTCGAAACA-TCGATGCCTTGCTTG
65 TGAGAAAAGCTTGTTCGACCTATCACTCGATTCACGGTATTTCGAATCAGT-GAT-CCTCGCTTG
* * ** *
7800 AGGGATTAAC-CTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCAACAGAGGGAGACGAAG
128 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-CTTCAGAGGGAGAAGAAG
** * * * * * * * * *
7864 TTCATAATGAGAAGAGCTTGTT-GACCTATAACTCGA-GCACTG-TATTTTGATTCAGTAACACA
192 TTCATAATGAGAAGAGCTTGTTCGACCTATCGCTCAATTCA-AGACATTTCGAATCAGTGACGCC
* * * * * * * * **
7926 TCACTTGTGGGTTTGACATTTCAGAA-GGAGTGTTCATAATGAGAAGAACTCATCC--CATAATG
256 TCGCTTGAGGGATTAACATTTCA-AATAGAGAGTTCATAATGAAAAGAACTCATCCGACAGAGGG
* ** * * * *
7988 AGAA-TAG--C-T--T--------CTT-TAAGACCTATCACTCGATTAACGGCATTTCGAATCAG
320 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCAAATCAG
*
8038 TGACACCTCGCTTGAGGGACTA
385 TGACACCTCGCTTGAGGGATTA
* * *
8060 ACCTTTCAAAATGG-GAGTTCATAATGAGAAGAACTCATCTGACAAAGGGAGAAGAAGTTCATAA
1 ACATTTC-AAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
** ** **** * * * * *
8124 TGAGAATAA-CTTGTTCGACCTATTGCTATATTCATAACACTTCGAATCAATAATGCCT-GAATG
65 TGAGAA-AAGCTTGTTCGACCTATCACTCGATTCACGGTATTTCGAATCAGTGAT-CCTCG-CTT
* * * ** *
8187 GAGGGATTAATATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGGGGAAGA
127 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-CTTCAGA-GGGAGAAGA
* * *
8251 CGTTTATAATGAGAAGAACTTGTTCGACCTAT
190 AGTTCATAATGAGAAGAGCTTGTTCGACCTAT
8283 TACTAGATTC
Statistics
Matches: 1534, Mismatches: 234, Indels: 111
0.82 0.12 0.06
Matches are distributed among these distances:
370 18 0.01
371 3 0.00
372 1 0.00
375 2 0.00
378 3 0.00
379 2 0.00
381 2 0.00
382 1 0.00
383 1 0.00
384 2 0.00
385 8 0.01
386 5 0.00
387 59 0.04
388 152 0.10
389 112 0.07
390 119 0.08
392 5 0.00
395 1 0.00
397 1 0.00
400 2 0.00
403 2 0.00
406 68 0.04
407 725 0.47
408 238 0.16
409 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (406 bp):
ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
GAGAAAAGCTTGTTCGACCTATCACTCGATTCACGGTATTTCGAATCAGTGATCCTCGCTTGAGG
GATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCTTCAGAGGGAGAAGAAGTTCA
TAATGAGAAGAGCTTGTTCGACCTATCGCTCAATTCAAGACATTTCGAATCAGTGACGCCTCGCT
TGAGGGATTAACATTTCAAATAGAGAGTTCATAATGAAAAGAACTCATCCGACAGAGGGAGAAGA
AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCAAATCAGTGACAC
CTCGCTTGAGGGATTA
Found at i:7663 original size:136 final size:136
Alignment explanation
Indices: 6061--7667 Score: 1949
Period size: 136 Copynumber: 11.8 Consensus size: 136
6051 TAAACCGATC
* * *
6061 ACATTTAAAATGGAGAGTTCATAATGAGAAGAACTTATCCGACAGAGGGAGAAGAAATTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* ** * * *
6126 GAGAAGAACTTGTTCGACCTATCACTCGATTCATGGTATTTCAAATTAGTGACGCCTCGTTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
6191 GGATTA
131 GGATTA
* * * * * *
6197 ATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCTGAAAGA-GGAGAGGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * * **
6261 GAGAAGAGCTTGCTCGACCTATCACTCAATTCA-CAGTATTTCAAAAT-AGTGACGTATCGCTTG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGA-CATTTC-GAATCAGTGACGCCTCGCTTG
*
6324 ATGGATTA
129 AGGGATTA
* * * *
6332 ACATTTCAAATGGAGAGTTCATGATGAGAAGAATTCATCCGACAGATGGAGAAAAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * *
6397 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCAAATAAGTGACACCTCGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
6462 GGATTA
131 GGATTA
* * * * * *
6468 ACATTTCAAATAGAAAGTTCAGAATGAGAAGAACTCATCCCACAGAGGGAGAAAAAATTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * * * * *
6533 TAGAAAAGCTTGTTTGACCTATCACTCGATTCACGGTA-ATTT-GAGTTAGTGA-TCCTCGCTTA
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCA-TG-ACATTTCGAATCAGTGACGCCTCGCTTG
6595 AGGGATTA
129 AGGGATTA
* * ***
6603 ACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCAACATTCAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * *
6668 GAGAAGAGTTTGTTCGACCTATCGCTCGATTCAAGACATTTCGAATCAGTGACGCCTTGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
6733 GGATTA
131 GGATTA
* * *
6739 ATATTTCAAATGGAGAGTTCATAATGAAAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * **
6804 GAGAAGAGCTTGTTCGACCTATCACTCGATTCAGGATATTTCAAATCAGCAACGCCTCGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
6869 GGATTA
131 GGATTA
* *
6875 ACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAAGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * *
6940 GAGAAGAGCTTGTTCGAACTATCGCTCGATTCAAGATATTTCG-ATCAGTGACACCTCGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
7004 GGATTA
131 GGATTA
* * * *
7010 ATC-TTTCACATGGAGAGTTCATAATGAGAAGAACTCGTCTGACAGAGGGAGAAAAAGTTCATAA
1 A-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* ** * *
7074 TGAGAAGAGCTTGTTCGACCTATCGCTAAATTCATGACATTTTGAATCAGCGACGCCTCGCTTGA
65 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGA
7139 GGGATTA
130 GGGATTA
* * * * * *
7146 TCCTTTCAAATAGAGAGTTCATAATGAGAAGAAATCATCCAACAGAGGGAGAAGAAGTTCCTAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * *
7211 GAGAAGAGCTTGTTCAACCTATCGCTCGATTCATGACGTTTCGAATCAGTGTCGCCTTGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
7276 GGATTA
131 GGATTA
** * *
7282 ATTTTTCAAATGGAGAGTTCAAAATGAGAAGAAAC-CATCCGACTGAGGGAGAAGAAGTTCATAA
1 ACATTTCAAATGGAGAGTTCATAATGAGAAG-AACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
7346 TGAGAAAAGCTTGTTCAACCTATCACTCGATTCA-CATTATTTCGAATCAGTGATGCCTCACTTT
65 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGA-CATTTCGAATCAGTGACGCCTCGCTTG
7410 AGGGATTA
129 AGGGATTA
* * *** *
7418 ACATTTCAAATGGAGAGTTCATAATAAAAAGAACTCATCCTTTAGAAGGAGAAGAAGTTCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * * * * *
7483 GAGAAGAGCTTCTTCGACCTATCGCTCAATTCACGATATTTTGAATCAGTGACGCCTCGCTTTAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
*
7548 GGATAA
131 GGATTA
* * * * * *
7554 ACATTTCAAATAGAGAGTTCATAATAAGAAGAACTCATTCTACAAAGGGAGAAGAAGATCATAAT
1 ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * * *
7619 AAGAAGAGCTTGTTCGACTTATCGCTCAATTCATGACATATT-GAATCAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACAT-TTCGAATCAG
7668 GGACACCTTT
Statistics
Matches: 1272, Mismatches: 181, Indels: 36
0.85 0.12 0.02
Matches are distributed among these distances:
133 1 0.00
134 5 0.00
135 348 0.27
136 906 0.71
137 11 0.01
138 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (136 bp):
ACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGCTTGAG
GGATTA
Found at i:8325 original size:136 final size:134
Alignment explanation
Indices: 8070--8338 Score: 360
Period size: 136 Copynumber: 2.0 Consensus size: 134
8060 ACCTTTCAAA
* *
8070 ATGGGAGTTCATAATGAGAAGAACTCATCTGACAAAGGGAGAAGAAGTTCATAATGAGAATAACT
1 ATGGGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAATGAGAAGAACT
* * * * * * *
8135 TGTTCGACCTATTGCTATATTCATAACACTTCGAATCAATAATGCCTGAATGGAGGGATTAATAT
66 TGTTCGACCTATTACTAGATTCACAACACCTCGAATCAATAATACCTCAATGGAGGGATCAATAT
8200 TTCG
131 TTCG
* * * * *
8204 ATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGGGGAAGACGTTTATAATGAGAAGAA
1 ATGG-GAGTTCATAATGAGAAGAACTCATCCGACA-AAGGGAGAAGAAGTTCATAATGAGAAGAA
* *
8269 CTTGTTCGACCTATTACTAGATTCACAACACCTCGAATC-ATCATCACCTCACTGGAGGGATCAA
64 CTTGTTCGACCTATTACTAGATTCACAACACCTCGAATCAATAAT-ACCTCAATGGAGGGATCAA
8333 TATTTC
128 TATTTC
8339 CAGATGTTTA
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
134 4 0.03
135 32 0.28
136 80 0.69
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (134 bp):
ATGGGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAATGAGAAGAACT
TGTTCGACCTATTACTAGATTCACAACACCTCGAATCAATAATACCTCAATGGAGGGATCAATAT
TTCG
Found at i:10039 original size:21 final size:20
Alignment explanation
Indices: 9989--10046 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
9979 ACTTGGTATA
*
9989 TTTTATTTTATTTTTTACTGT
1 TTTTATTTTA-TTTTTACTAT
* *
10010 TTTTGTTTTATTTTTATTAT
1 TTTTATTTTATTTTTACTAT
10030 TTGTTATTTTAATTTTT
1 TT-TTATTTT-ATTTTT
10047 TTCAATTCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 10 0.32
21 15 0.48
22 6 0.19
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTATTTTATTTTTACTAT
Found at i:11529 original size:20 final size:20
Alignment explanation
Indices: 11501--11557 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
11491 CTTGTGTTTA
*
11501 TTTTATTTTGTTTTTACTAT
1 TTTTATTTTATTTTTACTAT
* *
11521 TTTTGTTTTATTTTTATTAT
1 TTTTATTTTATTTTTACTAT
11541 TTGTTATTTTAATTTTT
1 TT-TTATTTT-ATTTTT
11558 TAATTCGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 19 0.61
21 6 0.19
22 6 0.19
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTTATTTTATTTTTACTAT
Found at i:14730 original size:136 final size:136
Alignment explanation
Indices: 14323--16868 Score: 3028
Period size: 136 Copynumber: 18.7 Consensus size: 136
14313 TAAACCGATC
14323 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* *
14388 TGAGAAGAACTTGTTCGACCTATCACTCGATTCACGGTATTTTGAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
14453 GGGATT
131 GGGATT
* * * *
14459 AATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCCGACAGA-GGTGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* *
14523 TGAGAAGAGCTTGCTCGACCTATCACTCGATTCACAATATTTTGAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
14588 GGGATT
131 GGGATT
* * * *
14594 AACATTTCAAATGGAGAGTTTATAATGAGAAGAAATCATCCGACAGAGGGAGAAAAAGTTGATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** * *
14659 TGAGAAGAGCTTGTTCGGCCTATCACTCGATTCACGGTATTTAAAATAAGTGAGGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
14724 GGGATT
131 GGGATT
* ** * * * *
14730 AACATTTCAAATGGAGAGTTCATAATGGGAAGAACTCATTTGATAGAGGGAGAAGAAATTCGTGA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * **
14795 TTAGAAAAGCTTGTTTGACCTATCTCTCGATTCACGGTATTTTGAGTTAGTGATGCCTTACTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
*
14860 CGGATT
131 GGGATT
* * ***
14866 AACATTTCAAATAGAGAGTTCATAATGAGAATAACTCATCATTCAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
*
14931 TGAGAAGAACTTGTTCGACCTATCACTCGATTCAC-AGTATTTTGAATCAGTGACGCCTCGCTTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGA-TATTTTGAATCAGTGACGCCTCGCTTG
14995 AGGGATT
130 AGGGATT
* * * *
15002 AATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCCGACAGA-GGTGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* *
15066 TGAGAAGAGCTTGCTCGACCTATCACTCGATTCACAATATTTTGAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
15131 GGGATT
131 GGGATT
* * * *
15137 AACATTTCAAATGGAGAGTTTATAATGAGAAGAAATCATCCGACAGAGGGAGAAAAAGTTGATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** * * *
15202 TGAGAAGAGCTTGTTCGGCCTATCACTCGATTCACGGTATTTAAAATAAGTGAGGCCCCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
15267 GGGATT
131 GGGATT
* * ** * * * *
15273 AACATTTCAAATGGAGAGTTCAGAATGGGAAGAACTCATTTGATAGAGGGAGAAGAAATTCGTGA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * **
15338 TTAGAAAAGCTTGTTTGACCTATCTCTCGATTCACGGTATTTTGAGTTAGTGATGCCTTACTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
*
15403 CGGATT
131 GGGATT
* * *** *
15409 AACATTTCAAATAGAGAGTTCATAATGAGAATAACTCATCATTCAGAGGGAGAAGAAGATCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * **
15474 TGAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGACATTTCAAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
*
15539 GGGAAT
131 GGGATT
* * * * *
15545 AACCTTTCAAATGGAGAGTTCATAATGAAAAGAAATCATCTGACAGAGTGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
** * * * * *
15610 CAAGAAGAGCTTGTTCTACCTATCAATCGAGTCAC-ATCATTTCGAATCAGTGACAG-CTTGCTT
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTTGAATCAGTGAC-GCCTCGCTT
*
15673 GAGAGATT
129 GAGGGATT
* * *
15681 AATC-TTTCTAATGGAGAGTTCATAATGAGAAGAACTCATTCGACAGAGGGAG-A-ACGTTCATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * * * * * * * * * *
15743 ATGAGAAGAGTTTTTTCGACCTGTCGCTCAAGTCATGACATTTTGAATCAGGGACGACTCGCTCG
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTG
15808 AGGGATT
130 AGGGATT
* * * * *
15815 ATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGACGTTCTTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * *
15880 TGAGAATAGCTTGTTCAACCTAACGCTCGACTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
*
15945 AGGATT
131 GGGATT
* * * *
15951 AATATTTCAACTGGAGAGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** *
16016 TGAGAAAAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGATGCCTCATTTTA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
16081 GGGATT
131 GGGATT
* * *** * *
16087 AACTTTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCTTTAGAGGTAGAAGAAGTTCATAG
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
16152 TGAGAAGAGCTTGTTCGACCTATCGCTCGATTAAAGACATTTCGAATCAATGACGCCTCACTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
16217 GGGATT
131 GGGATT
* * * * *
16223 AACATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATCCAAAAAAGGGAGAAGAAGATCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * *
16288 TAAGAAGAGCTTGTTCAACTTATCACTCGATTCATGACAATTTGAATCAGAGACGCCTTGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
16353 GGGATT
131 GGGATT
* * * * *
16359 AACCTTTCAAATGGATAGTTCATAACGAGAAGAACTCATTCGACAGAGGGAGAATAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
16424 TGAGAAGAGCTTGCTCAACCTATCACTCGATTCATGACATTTTAAATCAGCGATGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
16489 GGGATT
131 GGGATT
* * * * * * *
16495 AGCCTTTTAAATGGATAGTTCATAATGAGAAGAACTCGTCCGACAAAAGAAGAGAAGAAGTTCAT
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AGAG-GGAGAAGAAGTTCAT
* *** ** **
16560 AATGAGAAGAGCTTGTTCAACCTATTGTTCGATTCACGGA-ATTTTGAATCAACGACGCCTTACT
64 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GATATTTTGAATCAGTGACGCCTCGCT
16624 TGAGGGATT
128 TGAGGGATT
* * *
16633 AAC-CTACAATTGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* ** * *
16697 CGAGAAGAGCTTGTTAC-ACCTATCGA-TCGATTCACGATATTTCAAATCAGTGACGCCTTGGTT
66 TGAGAAGAGCTTGTT-CGACCTATC-ACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTT
*
16760 GAGGAATT
129 GAGGGATT
* * * * * * *
16768 AACCTTTCAAATGGAGAGTTCATAAGGTGAACAATTCATCCTATAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * *
16833 TGAAAATAGCTTGTTCGACCTATCACTCGAGTCACG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG
16869 TCATTTCGAA
Statistics
Matches: 2045, Mismatches: 344, Indels: 42
0.84 0.14 0.02
Matches are distributed among these distances:
133 2 0.00
134 108 0.05
135 334 0.16
136 1485 0.73
137 39 0.02
138 75 0.04
139 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (136 bp):
AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
GGGATT
Found at i:14937 original size:272 final size:272
Alignment explanation
Indices: 14323--27769 Score: 9159
Period size: 272 Copynumber: 49.8 Consensus size: 272
14313 TAAACCGATC
14323 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * *
14388 TGAGAAGAACTTGTTCGACCTATCACTCGATTCACGGTATTTTGAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * * *
14453 GGGATTAATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCCGACAGA-GGTGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * *
14517 TCATAATGAGAAGAGCTTGCTCGACCTATCACTCGATTCACAATATTTTGAATCAGTGACGCCTC
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
14582 GCTTGAGGGATT
261 GCTTGAGGGATT
* * * *
14594 AACATTTCAAATGGAGAGTTTATAATGAGAAGAAATCATCCGACAGAGGGAGAAAAAGTTGATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** * *
14659 TGAGAAGAGCTTGTTCGGCCTATCACTCGATTCACGGTATTTAAAATAAGTGAGGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* ** * *
14724 GGGATTAACATTTCAAATGGAGAGTTCATAATGGGAAGAACTCATTTGATAGAGGGAGAAGAAAT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * * * * * * *
14789 TCGTGATTAGAAAAGCTTGTTTGACCTATCTCTCGATTCACGGTATTTTGAGTTAGTGATGCCTT
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
* *
14854 ACTTGACGGATT
261 GCTTGAGGGATT
* * ***
14866 AACATTTCAAATAGAGAGTTCATAATGAGAATAACTCATCATTCAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* *
14931 TGAGAAGAACTTGTTCGACCTATCACTCGATTCAC-AGTATTTTGAATCAGTGACGCCTCGCTTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGA-TATTTCGAATCAGTGACGCCTCGCTTG
* * * *
14995 AGGGATTAATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCCGACAGA-GGTGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * *
15059 TTCATAATGAGAAGAGCTTGCTCGACCTATCACTCGATTCACAATATTTTGAATCAGTGACGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
15124 CGCTTGAGGGATT
260 CGCTTGAGGGATT
* * * *
15137 AACATTTCAAATGGAGAGTTTATAATGAGAAGAAATCATCCGACAGAGGGAGAAAAAGTTGATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** * * *
15202 TGAGAAGAGCTTGTTCGGCCTATCACTCGATTCACGGTATTTAAAATAAGTGAGGCCCCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * ** * *
15267 GGGATTAACATTTCAAATGGAGAGTTCAGAATGGGAAGAACTCATTTGATAGAGGGAGAAGAAAT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * * * * * * *
15332 TCGTGATTAGAAAAGCTTGTTTGACCTATCTCTCGATTCACGGTATTTTGAGTTAGTGATGCCTT
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
* *
15397 ACTTGACGGATT
261 GCTTGAGGGATT
* * *** *
15409 AACATTTCAAATAGAGAGTTCATAATGAGAATAACTCATCATTCAGAGGGAGAAGAAGATCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * *
15474 TGAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGACATTTCAAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * * * * *
15539 GGGAATAACCTTTCAAATGGAGAGTTCATAATGAAAAGAAATCATCTGACAGAGTGAGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
** * * *
15604 TCATAACAAGAAGAGCTTGTTCTACCTATCAATCGAGTCAC-ATCATTTCGAATCAGTGACAG-C
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGAC-GCC
* *
15667 TTGCTTGAGAGATT
259 TCGCTTGAGGGATT
* * *
15681 AATC-TTTCTAATGGAGAGTTCATAATGAGAAGAACTCATTCGACAGAGGGAG-A-ACGTTCATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * * * * * * * * * * *
15743 ATGAGAAGAGTTTTTTCGACCTGTCGCTCAAGTCATGACATTTTGAATCAGGGACGACTCGCTCG
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* * * *
15808 AGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGACG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * *
15873 TTCTTAATGAGAATAGCTTGTTCAACCTAACGCTCGACTCACGATATTTCGAATCAGTGACGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
*
15938 CGCTTGAAGGATT
260 CGCTTGAGGGATT
* * * *
15951 AATATTTCAACTGGAGAGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * ** *
16016 TGAGAAAAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGATGCCTCATTTTA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * *** *
16081 GGGATTAACTTTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCTTTAGAGGTAGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * *
16146 TCATAGTGAGAAGAGCTTGTTCGACCTATCGCTCGATTAAAGACATTTCGAATCAATGACGCCTC
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
*
16211 ACTTGAGGGATT
261 GCTTGAGGGATT
* * * * *
16223 AACATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATCCAAAAAAGGGAGAAGAAGATCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
16288 TAAGAAGAGCTTGTTCAACTTATCACTCGATTCATGACAATTT-GAATCAGAGACGCCTTGCTTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGA-TATTTCGAATCAGTGACGCCTCGCTTG
* * * * *
16352 AGGGATTAACCTTTCAAATGGATAGTTCATAACGAGAAGAACTCATTCGACAGAGGGAGAATAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * ** * *
16417 TTCATAATGAGAAGAGCTTGCTCAACCTATCACTCGATTCATGACATTTTAAATCAGCGATGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
16482 CGCTTGAGGGATT
260 CGCTTGAGGGATT
* * * * * * *
16495 AGCCTTTTAAATGGATAGTTCATAATGAGAAGAACTCGTCCGACAAAAGAAGAGAAGAAGTTCAT
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AGAG-GGAGAAGAAGTTCAT
* *** * ** **
16560 AATGAGAAGAGCTTGTTCAACCTATTGTTCGATTCACGGA-ATTTTGAATCAACGACGCCTTACT
64 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GATATTTCGAATCAGTGACGCCTCGCT
* * *
16624 TGAGGGATTAAC-CTACAATTGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
128 TGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
* *
16688 AGTTCATAACGAGAAGAGCTTGTTAC-ACCTATCGA-TCGATTCACGATATTTCAAATCAGTGAC
193 AGTTCATAATGAGAAGAGCTTGTT-CGACCTATC-ACTCGATTCACGATATTTCGAATCAGTGAC
* * *
16751 GCCTTGGTTGAGGAATT
256 GCCTCGCTTGAGGGATT
* * * * * * *
16768 AACCTTTCAAATGGAGAGTTCATAAGGTGAACAATTCATCCTATAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * *
16833 TGAAAATAGCTTGTTCGACCTATCACTCGAGTCACG-TCATTTCG----A---A--------TT-
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTTG
* * ** * * * *
16881 A-GGATTAACCTTTCAAATGGAGAGTTCATAAGGTTAACAACGCATCCTATAGAGGGAGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * *
16945 TTCATAATGAAAAGAGCTTGTTCGACCTATCAATCGAGTCACG-TCATTTCGAATCATTGACACC
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCC
* * *
17009 TCTCTTCAAGGATT
259 TCGCTTGAGGGATT
* * * * * *
17023 AATATTTCAAATGGAGAGTTCATAATGTGATGAACTCATCCGACAGATGGAGAAAAAGTTTATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
17088 TCAGAATAGCTTGTTTGACCTATCACTC-ATTTCATGACATTTTGAATCAGTGACGCCTCACTTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGA-TTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* * * * * *
17152 AGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCTTCCGACACAGGGAGAAGATG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * * * *
17217 TTCCTAATGAGAAGAGCTTGTTCAACCCATCGCTCGATTCATGACATTTCGAATTAATGACGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
*
17282 TGCTTGAGGGATT
260 CGCTTGAGGGATT
** * * * * * * *
17295 ATTATTTTAAATGCAGAGTTCAAAATGAGAAGAACTCGTCCGACTA-AGGGAAAAGAGGTTTATA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AGAGGGAGAAGAAGTTCATA
* * * * * * * *
17359 ATGAGAAAAACTTGTTCAAACTATAACTCAATTCATGATATTTCGAATCAGTGACACCTCGCCTT
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCG-CTT
* **
17424 -AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGGGAGAAGAA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * * **
17487 GTTTATAATGAGAAGACCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAATGAAACC
194 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCC
17552 TCGCTTGAGGGATT
259 TCGCTTGAGGGATT
* * * * * * * *
17566 AACATTTCAAATGGAGTGTTTAGAATGAGAAGAACT-AGTCCGAAAAAGAGAGAAAAAGATCATA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCA-TCCGACAGAGGGAGAAGAAGTTCATA
* * * * *
17630 AT-AGGAAGAGCTTGTTCGACTTATCGCTCGATTCATGACAATTT-GAATCAGGGACGCCTCGCT
65 ATGA-GAAGAGCTTGTTCGACCTATCACTCGATTCACGA-TATTTCGAATCAGTGACGCCTCGCT
* * * * *
17693 TGAGGGATTAACCTTTTAAATGGATAGTTCATAATGAGAAGAACTCATTCGATAGAGGGAGAAGA
128 TGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
* * * * * *
17758 AGTTCATAATGAGAAGAGCTTGTTCAACCTATCGCTCGATTCACGACATTTCAAATCAGCGATGC
193 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGC
17823 CTCGCTTGAGGGATT
258 CTCGCTTGAGGGATT
* * * * * * *
17838 AGCCTTTTAAATGGATAGTTCATAATCAGAAGAACTCGTCCGAAAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * **
17903 TGAGAAGATCTTGTTCAACTTATTACTCGATTCACGGTATTTCAAATCA-TCGAC-CTCTTTCTT
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGT-GACGC-CTCGCTT
* * *
17966 GAGGGATTAAC-CTACAATTGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
** *
18030 GTTCATAATGAGAAGAGCTTGTTAAACCTATCGA-TCGATTCACGATATTTCGAATCAGCGACGC
194 GTTCATAATGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGATATTTCGAATCAGTGACGC
* *
18094 CTTGGTTGAGGGATT
258 CTCGCTTGAGGGATT
* * * *
18109 AACCTTTCAAATGGAGAGTTCATAA-GATGAACAACTCATCCGACAAAGGGAGAA-AAGGTTTAT
1 AACATTTCAAATGGAGAGTTCATAATGA-GAAGAACTCATCCGACAGAGGGAGAAGAA-GTTCAT
* * * * * * *
18172 AATCATAAGAACTTGTTCGACCTATCACTCAATTCACGACATTTTGAATCAGTGACGCCTCACTT
64 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTT
* * * * *
18237 GAGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCTTCCGACAGAGGGAGAAGAT
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * * * * *
18302 GTTTC-TAATGAGAAGAGCTTATTCAACCTATCGCTTGATTCACGACATTTCGAATTAGTGACGT
194 G-TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGC
* *
18366 CTCACTTGAGGCATT
258 CTCGCTTGAGGGATT
** * * * * **
18381 ATTATTTTAAATGCAGAGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAAGAAGTTTTTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * *
18446 TGAGAAAAACTTGTTCAAACTATCACTCAATTCATGATATTTCAAATCAGTGATGCCTCACATT-
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGC-TTG
* * **
18510 AGGGATTAACATTTTAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGGGAGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * ** *
18574 TTCATAATGAGAAGACCTTGTTCGACATATCGCTCAATTCACGACATTTAAAATCAGTGACACCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
18639 CGCTTGAGGGATT
260 CGCTTGAGGGATT
* * * * *
18652 AACATTTCAAATGGAGTGTTCATAATGAGAAGAACTCGTCCGACAAATGGATAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * *
18717 TAAGAAGAGCTTGTTCGACCTATCACTTGATTCACGACATTTCGAATCAGTGATGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * *
18782 GGGATTAACCATTT-AAATGGATAGTTCATAATGAGAATAACTCATCGGACAGAGGGAGAAGAAG
131 GGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * * * *
18846 TTCATAATTAGAAGATCTTGTTCGACCTATCGCTCAATTCACGACATTTTGAATCAGTAAAGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
**
18911 CTTTTGAGGGATT
260 CGCTTGAGGGATT
* * * *
18924 AATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATTCGAC--------------TTCCTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT-A
* * * * * * * ** **
18975 AT-AGAAGATCTTGTTCAACCTATCGCTCGATTCATGAAATTTTGAATCAGTAAATCCTCTTTTG
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* * * * * **
19039 AAGGATTAATATTTGAAATGGAGAGTTCAAAATGAGAAGAACTCATGCGATTGAGGGAGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * ** *
19104 TTCATAACGCAAAAAAGCTTGTTTAACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCC
195 TTCATAATG-AGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCC
** *
19169 TCATTTTAGGGATT
259 TCGCTTGAGGGATT
* *** * * *
19183 AACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCTTTAAAGGTAGAAGAAGTTCATAG
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * ** * * *
19248 TTAGAAGAGCTTGTTCGATCTATCGCTCGATTAAATACATTTCCAATTAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * * * * *
19313 GGGATTAACATTTCAAATGGAGAGTTCATAATAAAAAGAACTCATCCAAAAAAGGGAGAAGAAGA
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * * * *
19378 TCATAATAAGAAGAGCTTGTTCGACTTATTGA-TCGATTCATGACAATTT-AAATTAGGGACACC
196 TCATAATGAGAAGAGCTTGTTCGACCTA-TCACTCGATTCACGA-TATTTCGAATCAGTGACGCC
*
19441 TATG-TTGAGGGATT
259 T-CGCTTGAGGGATT
* * * * *
19455 AACCTTTCAAATGGATAGTTCATAATAAGAAGAACTCATTCGACAGAGGGAGAAGAAGTTTATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
** * * * * * * *
19520 TGAGAAGTTCTTGTTCAACCTATCGCTCGATTCATGACATTTCAAATCAGCGATGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
** * * * * * * * *
19585 TTGATTATCCTTTTAAATGGATAGTTCATAATGATAAGAACTCGTCCGACAGAGGGAGAAAAATT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* ** * * *
19650 TCATAATGAGAAGAGCTTGTTCAACCTATTGCTCGATTCACGGTATTTCGAATTAATGACGCCTT
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCC-T
*
19715 TG-TTGAGGGATT
260 CGCTTGAGGGATT
* * * * * * * *
19727 AACCTTTTAAATGGAGAGTTCATAAGGTGAACAACGCATCCTACAGATGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * *
19792 TGAAAAGAGCTTGTTTGACCTATCACTCGAGTT-ACGTTATTTCGAATCAGTGACACCTCACTTC
66 TGAGAAGAGCTTGTTCGACCTATCACTCGA-TTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* *
19856 AGGGATTAATC-TTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCGACAGAGGGAGAAAAA
130 AGGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * * * * *
19920 GTTCATAATCAGAAGAGCTTGGTCGACCTATCACTCAATTCATGACATTTTGAATTAGTGACGCC
194 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCC
*
19985 TCACTTGAGGGATT
259 TCGCTTGAGGGATT
* * ** * * * *
19999 ATCCTTTCAAATAAAGAGCTCATAATGAGAAGAACTCTTCCGACAGAGGGAGAAGATGTTCCTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * *
20064 TGAGAAGAGCTTGTTCAACCTATCGCTCGATTCACGATATTTCGAATTACTGATGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
** * * * * *
20129 GGGATTATTATTTTAAATGTAGAGTTCAAAAGGAGAAGAACTCATCCGACAGAGGGACAAGAAGA
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG-
* * * * * * * * *
20194 TT-ATAATGAAAAAAACTTATTCAAACTATAACTCAATTCA-GTATATTTTGAATCAGTGACGCC
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-ATATTTCGAATCAGTGACGCC
20257 TCGCCTT-AGGGATT
259 TCG-CTTGAGGGATT
* ** *
20271 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGGGAGATGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* ** * * * * * *
20335 TGAGACGTCCTTTTTCGACCTAACGCTCGATTCACGACATTTCGAATCAGTGACACCTCACTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * * * *
20400 GGGATTAACATTTCAAATGGAGAGTTTATAATGAGAAGAACCCGTCCGAAAAAGGGAGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * *
20465 TCATAATAAGAAGAGCTTGTTCGACCTATCACTTGATTCATGACATTTCGAATCATTGATGCCTC
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
20530 GCTTGAGGGATT
261 GCTTGAGGGATT
* * * *
20542 AACCATTT-AAATGGATAGTTCATAATGAGAAAAACTCATCGGATAGAGGGAGAAGAAGTTCATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * * * * *
20606 ATGAGAAGAGCCTGTT-AATCCTATCGCTCGATTCACGGTATTTCGAATCAGTGACGCCTTGTTT
65 ATGAGAAGAGCTTGTTCGA-CCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTT
* *
20670 GAGGGATTAACCTTTCAAATGGAGAGTTTATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * * *
20735 GTTCATTATGAGAAGAGATTGTTCGACCTAAT-ACTCGAGTCA-GGTCATTTCGAATCAGTGACA
194 GTTCATAATGAGAAGAGCTTGTTCGACCT-ATCACTCGATTCACGAT-ATTTCGAATCAGTGACG
*
20798 CCTCGCTTGAGGAATT
257 CCTCGCTTGAGGGATT
* *
20814 AATC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAAAAGTTCATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * * * * * * **
20878 AT--G-ATA---TGTTCGACCTATCGCTCAATTCATGACATTTCGAATCAGTAAAGCCTCTTTTG
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* * **
20937 AGGGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATCCGATTGAGGGAGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * * * **
21002 TTCCTAATTAGAAGATCTTGTTCAACCTATCACTCGATTCAGGATATTTCGAATTAGTAAAACCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
**
21067 CTTTTGAGGGATT
260 CGCTTGAGGGATT
* * * * * * *
21080 AATATTTCAAATAGAGAGTTCAAAATGAGAAGAATTCATTCGACTGAGGGAGAAGATGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * ** *
21145 TGCGAAAAACTTGTTTGACCTATCACCCGATTCACGATATTTTGAATCAGTGATGCCTCATTTTA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* *** *
21210 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATTCTTTAGAGGGAGAAAAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* ** * * * *
21275 TTATAATGAGAAGAGCTTGTTCGACCTATGGCTCGATTCATGACATTTTGAATCAGTAACGCCTC
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
**
21340 ATTTGAGGGATT
261 GCTTGAGGGATT
* * ** * * *
21352 AATATTTCAAATGGAGAGTTCATAATTAGAAGAACTCATCTAAAAAATGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * *
21417 TAAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGTATCAGCGACGCCTTGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * * * * *
21482 GGGATTAACCTTTTAAATGGATAGTTCATAATGAGAGGAACTCATCCGACACAGGAAGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* ** * * * * * * *
21547 TCATAATGAGAAGAACTTGTTTAACCTATCTCTCAATTCACGGTATTTCAAATCAGCGACACCTT
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
21612 GCTTGAGGGATT
261 GCTTGAGGGATT
* * * *
21624 AAC-CTTCAAATAGAGAGCTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** ** * * * *
21688 CGAGAAGATCACGTTAAACCTATCACTCGATTCATGGA-ATTTTGAATCAGCGACGCCTTGCTT-
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCA-CGATATTTCGAATCAGTGACGCCTCGCTTG
* * * * * * ** ** * * *
21751 ---G-TTCTACCTATC-ACTCGAGTCA-TCTAATTTTGCATCAGTGACACCT-CG-CTTA-AGGG
130 AGGGATT-AACATTTCAAATGGAG--AGT-TCATAATG-AGAAG-AACTCATCCGAC--AGAGGG
* *** ** * * *** *
21807 ATTAA-TCTTTCA-AATG-G-AGAGTTCATAATGTGAAGAACTCATCCGAC-AGAGGGA-GAAAA
187 A-GAAGAAGTTCATAATGAGAAGAG--C-T--TGT-TCGACCT-AT-C-ACTCGATTCACG--AT
* * * * * ***
21866 ACTTCATAATGAGAAGA-G-CTTG-TTCGACCTATT
240 ATTTC-GAATCAG-TGACGCCTCGCTT-GAGGGATT
** * ** * * * * ** **
21899 GCTCAATTCATGACACTTGGA-A--TCAGCGATGCCTCGCTTTATGGA-TTATCCTTTCA-A-AT
1 -AACATTTCA--A-A--TGGAGAGTTCA-TAATG---AG----AAGAACTCATCC-GACAGAGGG
* * ** * ** * * * * *
21958 AG-AG-TGTTCATAATGAGAAGA-ATTCATCGA--TA-GA-GGGA--GAAGA-AGTTCCTAATGA
51 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATA-TTTCGAATCA
* * * * * * * * * * * * * *
22013 GAAGA-G-CTTG-TTCA--AACTATCGCTCGATTC--ACGGA-ATTTC-GAATCAG-TG-ACGCC
115 G-TGACGCCTCGCTTGAGGGATTAAC-AT---TTCAAATGGAGAGTTCATAATGAGAAGAACTCA
* * * * * * ***
22067 T-CG-CTTGAGGGATTAA-TATTTCA-AAT-AG-AGAG-TTCAAATTGAGAAGAACTCA-TCTGA
175 TCCGAC-AGAGGGA-GAAGAAGTTCATAATGAGAAGAGCTT---GTT-CGACCTA-TCACTC-GA
* * * * * * ** * * ***
22124 TTGAGGGAAAAGAAGTTCATAATGAGAAAATCTTG-TTCGACCTATCACTCAATT
232 TTCA-CG---A-TATTTC-GAATCAG-TGA-C--GCCTCG--CT-TGA-GGGATT
* * * * * * * * * ***** **
22178 CACGATATTTCAAATCAGTGACG-CCTATATTTAG--GGATTAAGATTTCA-A-ATAG-AG-AGT
1 -A--ACATTTCAAAT-GGAGA-GTTC-ATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * *** ** *** * * *
22236 TCATAATGAGAAGAACACATCCT-TTAGAGGGAGAAGAAG-TTCATACTGATA---AG-AGCTTG
60 TCATAATGAGAAG-A-GC-T--TGTTCGACCTATCACTCGATTC--AC-GATATTTCGAATC-AG
* * *** ** * **** ** * *
22295 TTCGAC-CTATCGCTCGATTCA-CGACATTTCGAATCAGTGACCCCTCA-CCTGAG-GGATTA-A
116 -T-GACGC-CTCGCTTGAGGGATTAACATTTCAAAT--G-GAGAGTTCATAATGAGAAGA--ACT
** * * ** * ** ** ***
22355 CAT--TTCA-AGTG-G-AG-AGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTT-
173 CATCCGACAGAGGGAGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTA-TCACTCG-A-TTC
* ** * * ***
22413 -C-ATAATAAGAA-GAGCTTGTTCGACCTATCG-TTCGATTCA-T
235 ACGATATTTCGAATCAG--TG-ACG-CC--TCGCTT-GAGGGATT
* ** * * * * ** ** **
22453 GACATTTTGAATCAGCGATGCCTCACTTAA-GGGATTAAC-C-T-TTA-A-AATG-G-AG-AGTT
1 AACATTTCAAAT-GGAGA-G-TTCA--TAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * ** * * ** * * ** * *
22509 CATAATGAGAACAACTCATCCGA-C-A-GA-GGGA--GAAGA-AGTTTATAATAAGAAGA-GCTT
61 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATA-TTTCGAATCAG-TGACGC--
* * ** ** * ** * * * *
22566 GTTCGACCTATCACTCGATTCAAGTCATTTTGAATCAGTGACACCTCGCT--TGAG--GTATTAA
122 -CTCG--CT-TGA-GGGATT-AA--CATTTCAAAT--G-GAGAGTTC-ATAATGAGAAGAACTCA
*** ** * * ** * * ** * * *
22627 TCTTTCA-AATG-G-AG-AGTTCATAATGAAAAGAACTCATCCGA--TA-GA-GGGA--GA-AAA
175 TCCGACAGAGGGAGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT
* * * * ****
22681 AGTTCATAATGAGAAGA-GCTCGTTCGACCTATCGCTCAATT
240 ATTTC-GAATCAG-TGACGC-C--TCG--CT-T-GAGGGATT
* * * * * ** ** * * *
22722 CACGTCATTTCGAAT-CA-ACGTCGCCTCGCTTGAGGGATTAAC-CTTTC-A-A-A--TAG-AG-
1 -A--ACATTTCAAATGGAGA-GT-TCAT--AATGA--GAAGAACTCATCCGACAGAGGGAGAAGA
* * ** * ** ** *** * ** ** *
22777 AGTTAATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTAATAATGA-TAAGAA-CTTGT
57 AGTTCATAATGAGAAGAGCTTGTTCGACCTA-TCACTCG-A-TTCACGAT-ATTTCGAATC-AG-
* *** * * * ** * * **
22840 TAAACATATCGC-T---CGATTCACGGTATTTCGAATCAGTGACGCCTTGCGTAA-GCGATTAAC
116 T-GACGCCTCGCTTGAGGGATTAAC---ATTTCAAAT--G-GA-GAGTT-CATAATGAGAAGAAC
* * ** * * * * **
22900 TTTCAAATCGAGAGTTCATAATGAGAACAA-CTCATCCAACAGAGGGAGAAG-AAGTTCATAATG
172 --TC--ATC-CGA---CAGAGGGAGAAGAAGTTCAT--AA-TGA-GAAG-AGCTTG-T-------
* * * *
22963 AGAACAGCTTGTTCGACCTATTACTCGAGTCACG-TCAATTCGAATCAGTGACACCTCGCTTGAG
216 ------------TCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTTGAG
23027 GGATT
268 GGATT
*
23032 AATC-TTTCAAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGA--G-G--G-AG---AT-
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* ** ** * * *
23086 ATGAGAAGAGCTTATTCGACCTATCGTTTAATTCACGACATTGT-GAATCAGCGATGCCTCGCTT
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATT-TCGAATCAGTGACGCCTCGCTT
* * * * * * *
23150 GAGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCAACTGAGGTAGAACAA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * ** * *
23215 GTTCCTAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCATAACATTTCGTATCAGTGACGCC
194 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCC
23280 TCGCTTGAGGGATT
259 TCGCTTGAGGGATT
** * *
23294 -A-A--T----T-----GTTCGGAATGAGAAGAACTCATCCGACTGAGGGAGAATAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * *
23346 TGAAAAAATCATGTTTGACCTATCACTCGATTCACGATAATTT-GTATCAGTGATGCCTCACTTT
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTTG
* * * *
23410 AGGGATTAACATTTTAAATTGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAATAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * ** * * * *
23475 TT-ATAATGATAACA-CTTGTTAAACCTATCGCTCGATTC-TG-TATTTCAAATCA-TGATGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
* *
23535 TGCTTGA-GAATTT
260 CGCTTGAGGGA-TT
* * * * *
23548 AACCTTTCAAATAGAGTGTTCATAATGAGAACAACTCATCC-A-AGAGGGAGAAGATGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
23611 TGAGAACAACTTGTTTGACC--T-ACTAC-AGTCACG-TCATTTCAAATCATTGA---CAC-C-T
66 TGAGAAGAGCTTGTTCGACCTATCACT-CGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTT
*
23666 -A-GGATTAATC-TTTCAAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGA--G-G--G-
129 GAGGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
* * * * * * *
23722 AG---ATAATGAGAAGAGCTTATTCGACCTATCGCTCAATTCATGACATTGT-GAATCAGCGATG
193 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATT-TCGAATCAGTGACG
23783 CCTCGCTTGAGGGATT
257 CCTCGCTTGAGGGATT
* * * * * * *
23799 ATCCTTTCAAATAGAGAGTTCATAATGAGAA-AACACATCCAACGGAGGGAGAAGAAGTTCCTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * *
23863 TGAGAAGAGCTTGTTCAACCTATCACTCGATTCACAACATTTTGAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * *
23928 GGG------A-TT--AAT----AGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAATAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * *
23980 TCATAATGAAAAAAATGATT-TTTGACCTATCACTTGATTCACGATAATTT-GAATTAGTGATGC
196 TCATAATG-AGAAGA-GCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGC
* *
24043 CTCACTTTAGGGATT
258 CTCGCTTGAGGGATT
* * * *
24058 AGCATTTCAAATTGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTAATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * *
24123 TGATAAGAGCTTGTT--ACCTATCGCTCGA-TCACG-TATTTCAAATCATTGATGCCTTGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
*
24184 -GG-TTAAC-TTTCAAAT-GAGAGTTCATAATGAGAAGAACTCATCCGATAGA--G-G--G-AG-
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * ** * * *
24238 --ATAATGAGAACACCTTGTTCCACCTATTGCTCAATTCAGGATATTTCGAATCAGTGATGCCTC
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
24301 GCTTGAGGGATT
261 GCTTGAGGGATT
* * *
24313 ATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * * *
24378 TGAAAATAATCTTGTTTGACCTATCACTTGATCCACGATATTTTGAATCAGTGACACCTCACTTT
66 TGAGAA-GAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* * * *
24443 AGGAATTAACATTTCAAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGGGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * *
24508 TTCATAATAAGAAGAGCTTGTTCAACCTATCACTCAAGTCACG-TCATTTCGAATCAGAGACACC
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCC
* *
24572 TCGCATGAGGTATT
259 TCGCTTGAGGGATT
* * * * *
24586 AATATTTCAATTGGAGAGTCCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTAATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* ** * * ** *
24651 TGATAAGAGCTTGTTAAACTTATCGA-TCGATTCACGGTATTTCGAATCAGTGATACCTTGCTTG
66 TGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* * * * *
24715 AGCGATTAACCTTTCAAATGGAGAGTTCATAATGAGAACAACTCATCCAACAGAGGGAGAAGATG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * *
24780 TTCATAATGAGAACAACTTGTTCGACCTA-CTACTCGAGTCATG-TCATTTCGAATCAGTGACAC
195 TTCATAATGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGAT-ATTTCGAATCAGTGACGC
*
24843 CTCGCTTGAAGGATT
258 CTCGCTTGAGGGATT
* * * *
24858 AATC-TTTCAAATGAATAGTTCAAAATGAGAAGAACTTATCCGAC--A--GAG-AG-AG---ATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * ** * * * * *
24913 ATAAGAAGACCTTGTTCGACCTATTGCTCAATTCACAACATTTCGAATCAGCGATGCCTCGCTTG
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* * *
24978 AGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * *
25043 TTCCTAATGAGAAGAGCTTGTTCAACCTATCACACGATTCACAATATTTTGAATCAGTGATGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
*
25108 CACTTGAGGGATT
260 CGCTTGAGGGATT
* * * * * * **
25121 AATAGTTCAGATGGAGAGTTCAAAATGAGAAGAACTCATCTGACTGAGGGAGAATTAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * *
25186 TGAAAAAACTCTTGTTTGACCTATCACTCGATTCACGATATTTCGAATCTGTGATGCCTCACTTT
66 TGAGAAGA-GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTG
* ** * *
25251 AGGGATTAACATTTCAAATTGAGAGTTCATTTTGAGAAGTACTCATCC-TCTAGAGGGAGAAGAA
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AGAGGGAGAAGAA
* * * * * * *
25315 GTTCATAATGAGAAGAGCTTATTCGACCTATCGCTTGATTCATGACATTTTGAATCAGTGACCCC
194 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCC
*
25380 TCGCTTAAGGGATT
259 TCGCTTGAGGGATT
* *
25394 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGATAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * *
25459 TAAGAAGAGCTTGTTCGACCTATCACTCGAGTCACG-TCATTTTGAATCAGTGACACCTCG-TAT
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCT-T
*
25522 GAGGTATTAATC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
129 GAGGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
* * * ** * * *
25586 AGTTAATAATGATAAGAGCTTCTTAAACCTATCGCTCGATTCATGGTATTTCGAATCAGTGACGC
193 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGC
**
25651 CAT-GCTTGAACGATT
258 C-TCGCTTGAGGGATT
* * * * * *
25666 AACCTTTCAAATAGAGAGTTCATAATGAGAACAACTCATACAACAGAGGGAGTAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * *
25731 TGAGAACAACTTGTTCGACCTA-CTACTCGAGTCACG-TCATTTTGAATCAGTGACACCTCACTT
66 TGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTT
* *
25794 GAGGGATTAATCA-TTCAAATGAAGAGTTCATAATGAGAAGAACTCATCCGATAGA--G-G--G-
129 GAGGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
* * * * * * *
25852 AG---ATAATGAGAAGACCTTGTTCGACCTATTACTCAATTCACGACATTTTGAATCAGCGATGC
193 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGC
*
25914 ATCGCTTGAGGGATT
258 CTCGCTTGAGGGATT
* * * * * *
25929 ATCCTTTCAAATAGAGAGTTCATAATGAGAATAACTCATACGACAGAGGGAGAAGAAGTTCCTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * *
25994 TGAGAAGAGCTTGTTCAGTA--TATCACTCGATTCACAACATTTCGAATCAATGATGCCTCACTT
66 TGAGAAGAGCTTGTTC-G-ACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTT
* ** * * * * * * *
26057 GAGTGATTAGTAGTTCAAAAGGAGAGTTCAGAATGAGAAGAACTCATCCAACTGAAGGAGAATAA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * * * * **
26122 GTTCATAATGA-AATTAATCCTCTTTGACCTATCACTCGATTCACGATATTTTGAATCAGTGATA
194 GTTCATAATGAGAA--GAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACG
*
26186 CCTCGCTTTAGGGATT
257 CCTCGCTTGAGGGATT
** *
26202 AACATTTCAAATTAAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * *
26267 TAAGAAGAGCTTGTTCGACCTATCACTCGAGTCACG-TCATTTCGAATCAGTGACACCTCGCTTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTTG
* * * * * *
26331 AGGTATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAGCTCATCCAACAAAGGGAGAAAAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * *
26396 TTCATAATGAGAAGAGTTTGTTCGACCTATCGCTCAATTCACGACATTTCGAATAAGCGACGCCT
195 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCT
26461 CGCTTGAGGGATT
260 CGCTTGAGGGATT
* * * *
26474 AACCTTTCAAATAGAAAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTAATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** * * * * * *
26539 TGATAAGAGGTTGTTAAACCTATCGCTCGATTCACGGTATTTTGAATTAGTGATGCCTTGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * * * * * *
26604 GTGATTAACCTTTCAAATAGAGAGTTCATAATGAGAACAACTCATCCAACCGAGGGTGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * * * **
26669 TCATACTGAGAATAGCTTGCTCGACCTATTACTCGAGTCAC-ACCATTCCGAATCACTGATACCT
196 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGA-TATTTCGAATCAGTGACGCCT
26733 CGCTTGAGGGATT
260 CGCTTGAGGGATT
** * * *
26746 AATC-TTTCAAATTAAAAGTTCATAATGAGAAGAACTCATCTGACA-A---AG--GGAG---ATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * * * * * *
26801 ACGAGAAGAGCTTGTTCGACCTGTCGCTCAATTCACGATATTTTGAATCAGCGATC-CTTCGCTT
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGA-CGCCTCGCTT
* * * * *
26865 GAGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAAATCATCCTACAGAGGGAGAAGAA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * *
26930 GTTCATAATGAGAAGAGCTTGGTCAACCTATCACTCAATTCA--AAACTTTCG-ATCAGTGACGC
194 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATA-TTTCGAATCAGTGACGC
* *
26992 CTCTCATGAGGGATT
258 CTCGCTTGAGGGATT
* * * * * * * * *
27007 AATAGTCCAAATGGAGAGTTCAAAATGAGAATAACTCATGCGACTGAGGGAGAATAAGTTCATAT
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
27072 TGAAAAAAAAACTTGTTTGACCTATCACTCGATTCACGATATTTTGAATCAGTGATGCCTCACTT
66 TG--AGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTT
* ** * * * ** *
27137 TAGGGATTAACATTTCAAATTAAGACTTCATAATGAGAAGAAATCAT-TGTTTAGAGGGAGAATA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCG-ACAGAGGGAGAAGA
* * * * *
27201 AGTTCATAATGAGAAGAGCTTGTTTGACCTATCGCTCGATTCACGACATTTCGAATCAGCGATGC
193 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGC
27266 CTCGCTTGAGGGATT
258 CTCGCTTGAGGGATT
* * * * *
27281 AACCTTTTAAATGGATAGTTCATGATGAGAAGAACTCATCCGACAGAGGGAGACGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * *
27346 TGAGAAGAGCTTGTT-GACCTATAACTCGAGTCACGATATTTC-ATATCAGTGACACATCTCTTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGA-ATCAGTGACGCCTCGCTTG
* * ** *
27409 TGGGATTGACATTTTTGAA-GGAGCGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
130 AGGGATTAACA-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * ** * * * * * * *
27473 GTTCTTAATGAGAAGAACTTGTTTGACCTATTGCTAGATTCACAACACTTCGAATCAATAATGCC
194 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCC
* *
27538 TCGATGGAGGGATT
259 TCGCTTGAGGGATT
* * *
27552 AACATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGGGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * * * * * * *
27616 TGAGATGAACTTGTTTGACCTATTACTAGATTTACAACACTTCGAATCAATAATGCCTCGATAGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
* * * *
27681 GGGATTAATATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGAGAAGAAAT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
*
27745 TCATAATGAGAAGAACTTGTTCGAC
196 TCATAATGAGAAGAGCTTGTTCGAC
27770 TAATTGCTAG
Statistics
Matches: 10417, Mismatches: 2194, Indels: 1131
0.76 0.16 0.08
Matches are distributed among these distances:
247 10 0.00
248 20 0.00
249 60 0.01
250 16 0.00
251 48 0.00
252 39 0.00
253 6 0.00
254 36 0.00
255 389 0.04
256 40 0.00
257 31 0.00
258 157 0.02
259 288 0.03
260 75 0.01
261 64 0.01
262 87 0.01
263 575 0.06
264 47 0.00
265 74 0.01
266 242 0.02
267 56 0.01
268 37 0.00
269 33 0.00
270 407 0.04
271 1714 0.16
272 4373 0.42
273 901 0.09
274 167 0.02
275 31 0.00
276 31 0.00
277 21 0.00
278 13 0.00
279 16 0.00
280 22 0.00
281 18 0.00
282 15 0.00
283 20 0.00
284 11 0.00
285 31 0.00
286 17 0.00
287 17 0.00
288 14 0.00
289 6 0.00
290 5 0.00
291 5 0.00
292 6 0.00
293 9 0.00
294 2 0.00
296 5 0.00
297 9 0.00
298 9 0.00
299 2 0.00
300 5 0.00
301 18 0.00
302 2 0.00
303 5 0.00
304 3 0.00
305 7 0.00
306 2 0.00
307 10 0.00
308 4 0.00
309 2 0.00
310 4 0.00
311 4 0.00
312 2 0.00
313 2 0.00
314 4 0.00
315 2 0.00
316 3 0.00
317 7 0.00
318 4 0.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (272 bp):
AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGA
GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTC
GCTTGAGGGATT
Found at i:15045 original size:408 final size:406
Alignment explanation
Indices: 14323--21751 Score: 7311
Period size: 408 Copynumber: 18.3 Consensus size: 406
14313 TAAACCGATC
14323 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* *
14388 TGAGAAGAACTTGTTCGACCTATCACTCGATTCACGGTATTTTGAATCAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* * * *
14453 GGGATTAATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCCGA-CAGA-GGTGAAGAAG
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-C-ATCAGAGGGAGAAGAAG
* * *
14516 TTCATAATGAGAAGAGCTTGCTCGACCTATCACTCGATTCACAATATTTTGAATCAGTGACGCCT
194 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GTATTTCGAATCAGTGACGCCT
* *
14581 CGCTTGAGGGATTAACATTTCAAATGGAGAGTTTATAATGAGAAGAAATCATCCGACAGAGGGAG
258 CGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAG
* * * * ** *
14646 AAAAAGTTGATAATGAGAAGAGCTTGTTCGGCCTATCACTCGATTCACGGTATTTAAAATAAGTG
323 AAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTG
*
14711 AGGCCTCGCTTGAGGGATT
388 ACGCCTCGCTTGAGGGATT
* ** * * * *
14730 AACATTTCAAATGGAGAGTTCATAATGGGAAGAACTCATTTGATAGAGGGAGAAGAAATTCGTGA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * **
14795 TTAGAAAAGCTTGTTTGACCTATCTCTCGATTCACGGTATTTTGAGTTAGTGATGCCTTACTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* * *
14860 CGGATTAACATTTCAAATAGAGAGTTCATAATGAGAATAACTCATCATTCAGAGGGAGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCA-TCAGAGGGAGAAGAAGT
* *
14925 TCATAATGAGAAGAACTTGTTCGACCTATCACTCGATTCACAGTATTTTGAATCAGTGACGCCTC
195 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GTATTTCGAATCAGTGACGCCTC
* * * *
14990 GCTTGAGGGATTAATATTTCAAATGGAGAGTTTATAATGAGAATAACTCATCCGACAGA-GGTGA
259 GCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
* * *
15054 AGAAGTTCATAATGAGAAGAGCTTGCTCGACCTATCACTCGATTCACAATATTTTGAATCAGTGA
324 AGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGA
15119 CGCCTCGCTTGAGGGATT
389 CGCCTCGCTTGAGGGATT
* * * *
15137 AACATTTCAAATGGAGAGTTTATAATGAGAAGAAATCATCCGACAGAGGGAGAAAAAGTTGATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** * * *
15202 TGAGAAGAGCTTGTTCGGCCTATCACTCGATTCACGGTATTTAAAATAAGTGAGGCCCCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* * * *
15267 GGGATTAACATTTCAAATGGAGAGTTCAGAATGGGAAGAACTCATTTGAT-AGAGGGAGAAGAAA
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCA--TCATCAGAGGGAGAAGAAG
* * * * * * * * * *
15331 TTCGTGATTAGAAAAGCTTGTTTGACCTATCTCTCGATTCACGGTATTTTGAGTTAGTGATGCCT
194 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GTATTTCGAATCAGTGACGCCT
** * * * ***
15396 TACTTGACGGATTAACATTTCAAATAGAGAGTTCATAATGAGAATAACTCATCATTCAGAGGGAG
258 CGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAG
* * * * *
15461 AAGAAGATCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCATGACATTTCAAATCAGTG
323 AAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTG
*
15526 ACGCCTCGCTTGAGGGAAT
388 ACGCCTCGCTTGAGGGATT
* * * * *
15545 AACCTTTCAAATGGAGAGTTCATAATGAAAAGAAATCATCTGACAGAGTGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
** * * * * *
15610 CAAGAAGAGCTTGTTCTACCTATCAATCGAGTCAC-ATCATTTCGAATCAGTGACAG-CTTGCTT
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTTGAATCAGTGAC-GCCTCGCTT
* *
15673 GAGAGATTAATC-TTTCTAATGGAGAGTTCATAATGAGAAGAACTCATTCGA-CAGAGGGAG-A-
129 GAGGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCA-TC-ATCAGAGGGAGAAG
* * * * * * * * * * *
15734 ACGTTCATAATGAGAAGAGTTTTTTCGACCTGTCGCTCAAGTCATGACATTTTGAATCAGGGACG
191 AAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACG
* * * * *
15799 ACTCGCTCGAGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGG
255 CCTCGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGG
* * * * * * *
15864 GAGAAGACGTTCTTAATGAGAATAGCTTGTTCAACCTAACGCTCGACTCACGATATTTCGAATCA
320 GAGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCA
*
15929 GTGACGCCTCGCTTGAAGGATT
385 GTGACGCCTCGCTTGAGGGATT
* * * *
15951 AATATTTCAACTGGAGAGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** *
16016 TGAGAAAAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGATGCCTCATTTTA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* * * * *
16081 GGGATTAACTTTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCTTTAGAGGTAGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-CATCAGAGGGAGAAGAAGT
* * * * * *
16146 TCATAGTGAGAAGAGCTTGTTCGACCTATCGCTCGATTAAAGACATTTCGAATCAATGACGCCTC
195 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACGCCTC
* * * * *
16211 ACTTGAGGGATTAACATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATCCAAAAAAGGGAGA
259 GCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
* * * * * * *
16276 AGAAGATCATAATAAGAAGAGCTTGTTCAACTTATCACTCGATTCATGACAATTT-GAATCAGAG
324 AGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGA-TATTTCGAATCAGTG
*
16340 ACGCCTTGCTTGAGGGATT
388 ACGCCTCGCTTGAGGGATT
* * * * *
16359 AACCTTTCAAATGGATAGTTCATAACGAGAAGAACTCATTCGACAGAGGGAGAATAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
16424 TGAGAAGAGCTTGCTCAACCTATCACTCGATTCATGACATTTTAAATCAGCGATGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* * * * * * *
16489 GGGATTAGCCTTTTAAATGGATAGTTCATAATGAGAAGAACTCGTCCGA-CAAAAGAAGAGAAGA
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-C-ATC-AGAG-GGAGAAGA
* *** * * **
16553 AGTTCATAATGAGAAGAGCTTGTTCAACCTATTGTTCGATTCACGGAATTTTGAATCAACGACGC
192 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GTATTTCGAATCAGTGACGC
** * * *
16618 CTTACTTGAGGGATTAAC-CTACAATTGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
256 CTCGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
* *
16682 AGAAGAAGTTCATAACGAGAAGAGCTTGTTAC-ACCTATCGA-TCGATTCACGATATTTCAAATC
321 AGAAGAAGTTCATAATGAGAAGAGCTTGTT-CGACCTATC-ACTCGATTCACGATATTTCGAATC
* * *
16745 AGTGACGCCTTGGTTGAGGAATT
384 AGTGACGCCTCGCTTGAGGGATT
* * * * * * *
16768 AACCTTTCAAATGGAGAGTTCATAAGGTGAACAATTCATCCTATAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * *
16833 TGAAAATAGCTTGTTCGACCTATCACTCGAGTCACG-TCA--TT---TC---GA-------ATT-
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGAT-ATTTTGAATCAGTGACGCCTCGCTTG
* * ** * *
16881 A-GGATTAACCTTTCAAATGGAGAGTTCATAAGGTTAACAACGCATCCTAT-AGAGGGAGAAGAA
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-C-ATCAGAGGGAGAAGAA
* * * * *
16944 GTTCATAATGAAAAGAGCTTGTTCGACCTATCAATCGAGTCACGTCATTTCGAATCATTGACACC
193 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGT-ATTTCGAATCAGTGACGCC
* * * * * * *
17009 TCTCTTCAAGGATTAATATTTCAAATGGAGAGTTCATAATGTGATGAACTCATCCGACAGATGGA
257 TCGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
* * * * * * * *
17074 GAAAAAGTTTATAATCAGAATAGCTTGTTTGACCTATCACTC-ATTTCATGACATTTTGAATCAG
322 GAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGA-TTCACGATATTTCGAATCAG
*
17138 TGACGCCTCACTTGAGGGATT
386 TGACGCCTCGCTTGAGGGATT
* * * * * * *
17159 ATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCTTCCGACACAGGGAGAAGATGTTCCTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * * * *
17224 TGAGAAGAGCTTGTTCAACCCATCGCTCGATTCATGACATTTCGAATTAATGACGCCTTGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
** * * * * * *
17289 GGGATTATTATTTTAAATGCAGAGTTCAAAATGAGAAGAACTCGTCCGA-CTA-AGGGAAAAGAG
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-C-ATC-AGAGGGAGAAGAA
* * * * * * * * *
17352 GTTTATAATGAGAAAAACTTGTTCAAACTATAACTCAATTCATGATATTTCGAATCAGTGACACC
193 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACGCC
* **
17417 TCGCCTT-AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGGG
257 TCG-CTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
* * * *
17480 AGAAGAAGTTTATAATGAGAAGACCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAA
321 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAG
**
17545 TGAAACCTCGCTTGAGGGATT
386 TGACGCCTCGCTTGAGGGATT
* * * * * * * *
17566 AACATTTCAAATGGAGTGTTTAGAATGAGAAGAACT-AGTCCGAAAAAGAGAGAAAAAGATCATA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCA-TCCGACAGAGGGAGAAGAAGTTCATA
* * * * * *
17630 AT-AGGAAGAGCTTGTTCGACTTATCGCTCGATTCATGACAATTTGAATCAGGGACGCCTCGCTT
65 ATGA-GAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTT
* * *
17694 GAGGGATTAACCTTTTAAATGGATAGTTCATAATGAGAAGAACTCATTCGAT-AGAGGGAGAAGA
129 GAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCA-TC-ATCAGAGGGAGAAGA
* * * * * *
17758 AGTTCATAATGAGAAGAGCTTGTTCAACCTATCGCTCGATTCACGACATTTCAAATCAGCGATGC
192 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACGC
* * * * * * *
17823 CTCGCTTGAGGGATTAGCCTTTTAAATGGATAGTTCATAATCAGAAGAACTCGTCCGAAAGAGGG
256 CTCGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
* * * * * *
17888 AGAAGAAGTTCATAATGAGAAGATCTTGTTCAACTTATTACTCGATTCACGGTATTTCAAATCA-
321 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAG
**
17952 TCGAC-CTCTTTCTTGAGGGATT
386 T-GACGC-CTCGCTTGAGGGATT
* * *
17974 AAC-CTACAATTGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
** * * * *
18038 TGAGAAGAGCTTGTTAAACCTATCGA-TCGATTCACGATATTTCGAATCAGCGACGCCTTGGTTG
66 TGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTG
* * *
18102 AGGGATTAACCTTTCAAATGGAGAGTTCATAA-GATGAACAACTCATCCGA-CAAAGGGAGAA-A
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGA-GAAGAACTCAT-C-ATCAGAGGGAGAAGA
* * * * * * *
18164 AGGTTTATAATCATAAGAACTTGTTCGACCTATCACTCAATTCACGACATTTTGAATCAGTGACG
192 A-GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACG
* * * * *
18229 CCTCACTTGAGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCTTCCGACAGAGG
255 CCTCGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGG
* * * * * * *
18294 GAGAAGATGTTTC-TAATGAGAAGAGCTTATTCAACCTATCGCTTGATTCACGACATTTCGAATT
320 GAGAAGAAG-TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATC
* * *
18358 AGTGACGTCTCACTTGAGGCATT
384 AGTGACGCCTCGCTTGAGGGATT
** * * * * **
18381 ATTATTTTAAATGCAGAGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAAGAAGTTTTTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * ** * *
18446 TGAGAAAAACTTGTTCAAACTATCACTCAATTCATGATATTTCAAATCAGTGATGCCTCACATT-
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGC-TTG
* * * *
18510 AGGGATTAACATTTTAAATGGAGAGTTCATAATGAGAAGAACTAATCCTTAGAGGGAGAAGAAGT
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCATCAGAGGGAGAAGAAGT
* * * * * ** *
18575 TCATAATGAGAAGACCTTGTTCGACATATCGCTCAATTCACGACATTTAAAATCAGTGACACCTC
195 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACGCCTC
* * * * *
18640 GCTTGAGGGATTAACATTTCAAATGGAGTGTTCATAATGAGAAGAACTCGTCCGACAAATGGATA
259 GCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
* * *
18705 AGAAGTTCATAATAAGAAGAGCTTGTTCGACCTATCACTTGATTCACGACATTTCGAATCAGTGA
324 AGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGA
*
18770 TGCCTCGCTTGAGGGATT
389 CGCCTCGCTTGAGGGATT
* * *
18788 AACCATTT-AAATGGATAGTTCATAATGAGAATAACTCATCGGACAGAGGGAGAAGAAGTTCATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * * * * * * **
18852 ATTAGAAGATCTTGTTCGACCTATCGCTCAATTCACGACATTTTGAATCAGTAAAGCCTCTTTTG
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTG
* * *
18917 AGGGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCAT--TC----------G-ACT
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCATCAGAGGGAGAAGAAGT
* * * * * * * * **
18969 TCCTAAAT-AGAAGATCTTGTTCAACCTATCGCTCGATTCATGAAATTTTGAATCAGTAAATCCT
195 TCAT-AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACGCCT
** * * * * * **
19033 CTTTTGAAGGATTAATATTTGAAATGGAGAGTTCAAAATGAGAAGAACTCATGCGATTGAGGGAG
258 CGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAG
* * * ** *
19098 AAGAAGTTCATAACGCAAAAAAGCTTGTTTAACCTATCACTCGATTCACGATATTTTGAATCAGT
323 AAGAAGTTCATAATG-AGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGT
** *
19163 GACGCCTCATTTTAGGGATT
387 GACGCCTCGCTTGAGGGATT
* *** * * *
19183 AACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCTTTAAAGGTAGAAGAAGTTCATAG
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * ** * ** *
19248 TTAGAAGAGCTTGTTCGATCTATCGCTCGATTAAATACATTTCCAATTAGTGACGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* * ** * *
19313 GGGATTAACATTTCAAATGGAGAGTTCATAATAAAAAGAACTCATCCAAAAAAGGGAGAAGAAGA
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-CATCAGAGGGAGAAGAAGT
* * * * * * * * *
19378 TCATAATAAGAAGAGCTTGTTCGACTTATTGA-TCGATTCATGACAATTT-AAATTAGGGACACC
195 TCATAATGAGAAGAGCTTGTTCGACCTA-TCACTCGATTCACG--TATTTCGAATCAGTGACGCC
* * * * *
19441 TATG-TTGAGGGATTAACCTTTCAAATGGATAGTTCATAATAAGAAGAACTCATTCGACAGAGGG
257 T-CGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
* ** * * * * *
19505 AGAAGAAGTTTATAATGAGAAGTTCTTGTTCAACCTATCGCTCGATTCATGACATTTCAAATCAG
321 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAG
* * **
19570 CGATGCCTCGCTTGATTGATT
386 TGACGCCTCGCTTGAGGGATT
* * * * * * * *
19591 ATCCTTTTAAATGGATAGTTCATAATGATAAGAACTCGTCCGACAGAGGGAGAAAAATTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* ** * * * * *
19656 TGAGAAGAGCTTGTTCAACCTATTGCTCGATTCACGGTATTTCGAATTAATGACGCCTTTG-TTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCC-TCGCTTG
* * * * * * * *
19720 AGGGATTAACCTTTTAAATGGAGAGTTCATAAGGTGAACAACGCATCCTACAGATGGAGAAGAAG
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCAT-CAGAGGGAGAAGAAG
* * *
19785 TTCATAATGAAAAGAGCTTGTTTGACCTATCACTCGAGTT-ACGTTATTTCGAATCAGTGACACC
194 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGA-TTCACG-TATTTCGAATCAGTGACGCC
* * *
19849 TCACTTCAGGGATTAATC-TTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCGACAGAGGG
257 TCGCTTGAGGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
* * * * * * * *
19913 AGAAAAAGTTCATAATCAGAAGAGCTTGGTCGACCTATCACTCAATTCATGACATTTTGAATTAG
321 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAG
*
19978 TGACGCCTCACTTGAGGGATT
386 TGACGCCTCGCTTGAGGGATT
* * ** * * * *
19999 ATCCTTTCAAATAAAGAGCTCATAATGAGAAGAACTCTTCCGACAGAGGGAGAAGATGTTCCTAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * *
20064 TGAGAAGAGCTTGTTCAACCTATCGCTCGATTCACGATATTTCGAATTACTGATGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
** * * * * *
20129 GGGATTATTATTTTAAATGTAGAGTTCAAAAGGAGAAGAACTCATCCGA-CAGAGGGACAAGAAG
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-C-ATCAGAGGGAGAAGAAG
* * * * * * * * *
20193 ATT-ATAATGAAAAAAACTTATTCAAACTATAACTCAATTCA-GTATATTTTGAATCAGTGACGC
194 -TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG--TATTTCGAATCAGTGACGC
* **
20256 CTCGCCTT-AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGG
256 CTCG-CTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGG
* * ** * * * *
20319 GAGATGAAGTTCATAATGAGACGTCCTTTTTCGACCTAACGCTCGATTCACGACATTTCGAATCA
320 GAGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCA
* *
20384 GTGACACCTCACTTGAGGGATT
385 GTGACGCCTCGCTTGAGGGATT
* * * * *
20406 AACATTTCAAATGGAGAGTTTATAATGAGAAGAACCCGTCCGAAAAAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * * * * * *
20471 TAAGAAGAGCTTGTTCGACCTATCACTTGATTCATGACATTTCGAATCATTGATGCCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* *
20536 GGGATTAACCATTT-AAATGGATAGTTCATAATGAGAAAAACTCATCGGAT-AGAGGGAGAAGAA
131 GGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATC--ATCAGAGGGAGAAGAA
* * *
20599 GTTCATAATGAGAAGAGCCTGTT-AATCCTATCGCTCGATTCACGGTATTTCGAATCAGTGACGC
193 GTTCATAATGAGAAGAGCTTGTTCGA-CCTATCACTCGATTCAC-GTATTTCGAATCAGTGACGC
* * * *
20663 CTTGTTTGAGGGATTAACCTTTCAAATGGAGAGTTTATAATGAGAAGAACTCATCCGACAGAGGG
256 CTCGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
* * * *
20728 AGAAGAAGTTCATTATGAGAAGAGATTGTTCGACCTAAT-ACTCGAGTCA-GGTCATTTCGAATC
321 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCT-ATCACTCGATTCACGAT-ATTTCGAATC
* *
20791 AGTGACACCTCGCTTGAGGAATT
384 AGTGACGCCTCGCTTGAGGGATT
* *
20814 AATC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAAAAGTTCATA
1 AA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA
* * * * * * * * **
20878 AT--G-ATA---TGTTCGACCTATCGCTCAATTCATGACATTTCGAATCAGTAAAGCCTCTTTTG
65 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTG
* * *
20937 AGGGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATCCGAT-TGAGGGAGAAGAA
130 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCAT-C-ATCAGAGGGAGAAGAA
* * * * * * * **
21001 GTTCCTAATTAGAAGATCTTGTTCAACCTATCACTCGATTCAGGATATTTCGAATTAGTAAAACC
193 GTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACGCC
** * * * * * *
21066 TCTTTTGAGGGATTAATATTTCAAATAGAGAGTTCAAAATGAGAAGAATTCATTCGACTGAGGGA
257 TCGCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
* * * * * * *
21131 GAAGATGTTCATAATGCGAAAAACTTGTTTGACCTATCACCCGATTCACGATATTTTGAATCAGT
322 GAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGT
* ** *
21196 GATGCCTCATTTTAGGGATT
387 GACGCCTCGCTTGAGGGATT
* *** * *
21216 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATTCTTTAGAGGGAGAAAAAGTTTATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
** * * * **
21281 TGAGAAGAGCTTGTTCGACCTATGGCTCGATTCATGACATTTTGAATCAGTAACGCCTCATTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
* * ** * *
21346 GGGATTAATATTTCAAATGGAGAGTTCATAATTAGAAGAACTCATCTAAAAAATGGAGAAGAAGT
131 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATC-ATCAGAGGGAGAAGAAGT
* * * * *
21411 TCATAATAAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGTATCAGCGACGCCTT
195 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TATTTCGAATCAGTGACGCCTC
* * * * * *
21476 GCTTGAGGGATTAACCTTTTAAATGGATAGTTCATAATGAGAGGAACTCATCCGACACAGGAAGA
259 GCTTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
* ** * * * * *
21541 AGAAGTTCATAATGAGAAGAACTTGTTTAACCTATCTCTCAATTCACGGTATTTCAAATCAGCGA
324 AGAAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGA
* *
21606 CACCTTGCTTGAGGGATT
389 CGCCTCGCTTGAGGGATT
* * * *
21624 AAC-CTTCAAATAGAGAGCTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTTCATAA
1 AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * ** ** * * *
21688 CGAGAAGATCACGTTAAACCTATCACTCGATTCATGGA-ATTTTGAATCAGCGACGCCTTGCTTG
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCA-CGATATTTTGAATCAGTGACGCCTCGCTTG
21752 TTCTACCTAT
Statistics
Matches: 5787, Mismatches: 1087, Indels: 296
0.81 0.15 0.04
Matches are distributed among these distances:
389 1 0.00
390 74 0.01
391 193 0.03
392 38 0.01
393 2 0.00
394 121 0.02
395 204 0.04
396 1 0.00
399 2 0.00
401 10 0.00
402 322 0.06
403 5 0.00
404 3 0.00
405 10 0.00
406 350 0.06
407 1935 0.33
408 2098 0.36
409 332 0.06
410 85 0.01
411 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (406 bp):
AACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTCGCTTGA
GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCATCAGAGGGAGAAGAAGTT
CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTATTTCGAATCAGTGACGCCTCGC
TTGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
AAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACG
CCTCGCTTGAGGGATT
Found at i:16913 original size:119 final size:119
Alignment explanation
Indices: 16765--16998 Score: 423
Period size: 119 Copynumber: 2.0 Consensus size: 119
16755 TGGTTGAGGA
**
16765 ATTAACCTTTCAAATGGAGAGTTCATAAGGTGAACAATTCATCCTATAGAGGGAGAAGAAGTTCA
1 ATTAACCTTTCAAATGGAGAGTTCATAAGGTGAACAACGCATCCTATAGAGGGAGAAGAAGTTCA
* *
16830 TAATGAAAATAGCTTGTTCGACCTATCACTCGAGTCACGTCATTTCGAATTAGG
66 TAATGAAAAGAGCTTGTTCGACCTATCAATCGAGTCACGTCATTTCGAATTAGG
*
16884 ATTAACCTTTCAAATGGAGAGTTCATAAGGTTAACAACGCATCCTATAGAGGGAGAAGAAGTTCA
1 ATTAACCTTTCAAATGGAGAGTTCATAAGGTGAACAACGCATCCTATAGAGGGAGAAGAAGTTCA
16949 TAATGAAAAGAGCTTGTTCGACCTATCAATCGAGTCACGTCATTTCGAAT
66 TAATGAAAAGAGCTTGTTCGACCTATCAATCGAGTCACGTCATTTCGAAT
16999 CATTGACACC
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 110 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (119 bp):
ATTAACCTTTCAAATGGAGAGTTCATAAGGTGAACAACGCATCCTATAGAGGGAGAAGAAGTTCA
TAATGAAAAGAGCTTGTTCGACCTATCAATCGAGTCACGTCATTTCGAATTAGG
Found at i:17129 original size:136 final size:136
Alignment explanation
Indices: 16882--21745 Score: 4727
Period size: 136 Copynumber: 35.9 Consensus size: 136
16872 TTTCGAATTA
* * ** * * * *
16882 GGATTAACCTTTCAAATGGAGAGTTCATAAGGTTAACAACGCATCCTATAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * *
16947 CATAATGAAAAGAGCTTGTTCGACCTATCAATCGAGTCACGTCATTTCGAATCATTGACACCTCT
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
* *
17012 CTTCAA
131 CTTGAG
* * * * *
17018 GGATTAATATTTCAAATGGAGAGTTCATAATGTGATGAACTCATCCGACAGATGGAGAAAAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * *
17083 TATAATCAGAATAGCTTGTTTGACCTATCACTC-ATTTCATGACATTTTGAATCAGTGACGCCTC
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGA-TTCACGACATTTCGAATCAGTGACGCCTC
*
17147 ACTTGAG
130 TCTTGAG
* * * * * *
17154 GGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCTTCCGACACAGGGAGAAGATGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * * *
17219 CCTAATGAGAAGAGCTTGTTCAACCCATCGCTCGATTCATGACATTTCGAATTAATGACGCCT-T
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
17283 GCTTGAG
131 -CTTGAG
** * * * * * *
17290 GGATTATTATTTTAAATGCAGAGTTCAAAATGAGAAGAACTCGTCCGACTA-AGGGAAAAGAGGT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AGAGGGAGAAGAAGT
* * * * * * * * * *
17354 TTATAATGAGAAAAACTTGTTCAAACTATAACTCAATTCATGATATTTCGAATCAGTGACACCTC
65 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
17419 GCCTT-AG
130 -TCTTGAG
* **
17426 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * ** *
17490 TATAATGAGAAGACCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAATGAAACCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
17555 CTTGAG
131 CTTGAG
* * * * * * * *
17561 GGATTAACATTTCAAATGGAGTGTTTAGAATGAGAAGAACT-AGTCCGAAAAAGAGAGAAAAAGA
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCA-TCCGACAGAGGGAGAAGAAGT
* * * *
17625 TCATAAT-AGGAAGAGCTTGTTCGACTTATCGCTCGATTCATGACAATTT-GAATCAGGGACGCC
65 TCATAATGA-GAAGAGCTTGTTCGACCTATCACTCGATTCACGAC-ATTTCGAATCAGTGACGCC
*
17688 TCGCTTGAG
128 TCTCTTGAG
* * * * *
17697 GGATTAACCTTTTAAATGGATAGTTCATAATGAGAAGAACTCATTCGATAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * *
17762 CATAATGAGAAGAGCTTGTTCAACCTATCGCTCGATTCACGACATTTCAAATCAGCGATGCCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
17827 CTTGAG
131 CTTGAG
* * * * * * *
17833 GGATTAGCCTTTTAAATGGATAGTTCATAATCAGAAGAACTCGTCCGAAAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * ** *
17898 CATAATGAGAAGATCTTGTTCAACTTATTACTCGATTCACGGTATTTCAAATCA-TCGAC-CTCT
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGT-GACGC-CT
*
17961 TTCTTGAG
129 CTCTTGAG
* * *
17969 GGATTAAC-CTACAATTGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
** * *
18033 CATAATGAGAAGAGCTTGTTAAACCTATCGA-TCGATTCACGATATTTCGAATCAGCGACGCCT-
66 CATAATGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
18096 TGGTTGAG
130 T-CTTGAG
* * *
18104 GGATTAACCTTTCAAATGGAGAGTTCATAA-GATGAACAACTCATCCGACAAAGGGAGAA-AAGG
1 GGATTAACATTTCAAATGGAGAGTTCATAATGA-GAAGAACTCATCCGACAGAGGGAGAAGAA-G
* * * * * *
18167 TTTATAATCATAAGAACTTGTTCGACCTATCACTCAATTCACGACATTTTGAATCAGTGACGCCT
64 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCT
*
18232 CACTTGAG
129 CTCTTGAG
* * * * *
18240 GGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCTTCCGACAGAGGGAGAAGATGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG-T
* * * * * *
18305 TC-TAATGAGAAGAGCTTATTCAACCTATCGCTTGATTCACGACATTTCGAATTAGTGACGTCTC
65 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
18369 ACTTGAG
130 TCTTGAG
* ** * * * *
18376 GCATTATTATTTTAAATGCAGAGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
** * * * * * * * * * *
18441 TTTAATGAGAAAAACTTGTTCAAACTATCACTCAATTCATGATATTTCAAATCAGTGATGCCTCA
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
18506 CATT-AG
131 C-TTGAG
* * **
18512 GGATTAACATTTTAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * ** * *
18576 CATAATGAGAAGACCTTGTTCGACATATCGCTCAATTCACGACATTTAAAATCAGTGACACCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
18641 CTTGAG
131 CTTGAG
* * * * *
18647 GGATTAACATTTCAAATGGAGTGTTCATAATGAGAAGAACTCGTCCGACAAATGGATAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * *
18712 CATAATAAGAAGAGCTTGTTCGACCTATCACTTGATTCACGACATTTCGAATCAGTGATGCCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
18777 CTTGAG
131 CTTGAG
* * *
18783 GGATTAACCATTT-AAATGGATAGTTCATAATGAGAATAACTCATCGGACAGAGGGAGAAGAAGT
1 GGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * *
18847 TCATAATTAGAAGATCTTGTTCGACCTATCGCTCAATTCACGACATTTTGAATCAGTAAAGCCTC
65 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
18912 TTTTGAG
130 TCTTGAG
* * *
18919 GGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATTCGAC--------------TT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * * * * **
18970 CCTAAAT-AGAAGATCTTGTTCAACCTATCGCTCGATTCATGAAATTTTGAATCAGTAAATCCTC
66 CAT-AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
* *
19034 TTTTGAA
130 TCTTGAG
* * * * **
19041 GGATTAATATTTGAAATGGAGAGTTCAAAATGAGAAGAACTCATGCGATTGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * ** * *
19106 CATAACGCAAAAAAGCTTGTTTAACCTATCACTCGATTCACGATATTTTGAATCAGTGACGCCTC
66 CATAATG-AGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
19171 AT-TTTAG
130 -TCTTGAG
* *** * *
19178 GGATTAACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCTTTAAAGGTAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * ** * * *
19243 CATAGTTAGAAGAGCTTGTTCGATCTATCGCTCGATTAAATACATTTCCAATTAGTGACGCCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
19308 CTTGAG
131 CTTGAG
* * * * * *
19314 GGATTAACATTTCAAATGGAGAGTTCATAATAAAAAGAACTCATCCAAAAAAGGGAGAAGAAGAT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * * * *
19379 CATAATAAGAAGAGCTTGTTCGACTTATTGA-TCGATTCATGACAATTT-AAATTAGGGACACCT
66 CATAATGAGAAGAGCTTGTTCGACCTA-TCACTCGATTCACGAC-ATTTCGAATCAGTGACGCCT
* *
19442 ATGTTGAG
129 CTCTTGAG
* * * *
19450 GGATTAACCTTTCAAATGGATAGTTCATAATAAGAAGAACTCATTCGACAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* ** * * * * * * *
19515 TATAATGAGAAGTTCTTGTTCAACCTATCGCTCGATTCATGACATTTCAAATCAGCGATGCCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
*
19580 CTTGAT
131 CTTGAG
* * * * * * * * *
19586 TGATTATCCTTTTAAATGGATAGTTCATAATGATAAGAACTCGTCCGACAGAGGGAGAAAAATTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* ** ** * * *
19651 CATAATGAGAAGAGCTTGTTCAACCTATTGCTCGATTCACGGTATTTCGAATTAATGACGCCTTT
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
*
19716 GTTGAG
131 CTTGAG
* * * * * * * *
19722 GGATTAACCTTTTAAATGGAGAGTTCATAAGGTGAACAACGCATCCTACAGATGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * ** *
19787 CATAATGAAAAGAGCTTGTTTGACCTATCACTCGAGTT-ACGTTATTTCGAATCAGTGACACCTC
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGA-TTCACGACATTTCGAATCAGTGACGCCTC
* *
19851 ACTTCAG
130 TCTTGAG
* *
19858 GGATTAATC-TTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCGACAGAGGGAGAAAAAGT
1 GGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * *
19922 TCATAATCAGAAGAGCTTGGTCGACCTATCACTCAATTCATGACATTTTGAATTAGTGACGCCTC
65 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
19987 ACTTGAG
130 TCTTGAG
* * ** * * *
19994 GGATTATCCTTTCAAATAAAGAGCTCATAATGAGAAGAACTCTTCCGACAGAGGGAGAAGATGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * * * *
20059 CCTAATGAGAAGAGCTTGTTCAACCTATCGCTCGATTCACGATATTTCGAATTACTGATGCCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
20124 CTTGAG
131 CTTGAG
** * * * * *
20130 GGATTATTATTTTAAATGTAGAGTTCAAAAGGAGAAGAACTCATCCGACAGAGGGACAAGAAGAT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG-T
* * * * * * * * * *
20195 T-ATAATGAAAAAAACTTATTCAAACTATAACTCAATTCA-GTATATTTTGAATCAGTGACGCCT
65 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-ACATTTCGAATCAGTGACGCCT
*
20258 CGCCTT-AG
129 C-TCTTGAG
* ** *
20266 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTAATCC-TTAGAGGGAGATGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* ** * * * * *
20330 CATAATGAGACGTCCTTTTTCGACCTAACGCTCGATTCACGACATTTCGAATCAGTGACACCTCA
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
20395 CTTGAG
131 CTTGAG
* * * * *
20401 GGATTAACATTTCAAATGGAGAGTTTATAATGAGAAGAACCCGTCCGAAAAAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * *
20466 CATAATAAGAAGAGCTTGTTCGACCTATCACTTGATTCATGACATTTCGAATCATTGATGCCTCG
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
20531 CTTGAG
131 CTTGAG
* * * *
20537 GGATTAACCATTT-AAATGGATAGTTCATAATGAGAAAAACTCATCGGATAGAGGGAGAAGAAGT
1 GGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * **
20601 TCATAATGAGAAGAGCCTGTT-AATCCTATCGCTCGATTCACGGTATTTCGAATCAGTGACGCCT
65 TCATAATGAGAAGAGCTTGTTCGA-CCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCT
*
20665 -TGTTTGAG
129 CT-CTTGAG
* *
20673 GGATTAACCTTTCAAATGGAGAGTTTATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * *
20738 CATTATGAGAAGAGATTGTTCGACCTAAT-ACTCGAGTCAGGTCATTTCGAATCAGTGACACCTC
66 CATAATGAGAAGAGCTTGTTCGACCT-ATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
20802 GCTTGAG
130 TCTTGAG
* * *
20809 GAATTAATC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAAAAGT
1 GGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * *
20873 TCATAAT--G-ATA---TGTTCGACCTATCGCTCAATTCATGACATTTCGAATCAGTAAAGCCTC
65 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC
*
20932 TTTTGAG
130 TCTTGAG
* * **
20939 GGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATCCGATTGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * * * * **
21004 CCTAATTAGAAGATCTTGTTCAACCTATCACTCGATTCAGGATATTTCGAATTAGTAAAACCTCT
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
*
21069 TTTGAG
131 CTTGAG
* * * * * * *
21075 GGATTAATATTTCAAATAGAGAGTTCAAAATGAGAAGAATTCATTCGACTGAGGGAGAAGATGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * * * *
21140 CATAATGCGAAAAACTTGTTTGACCTATCACCCGATTCACGATATTTTGAATCAGTGATGCCTCA
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC-
*
21205 T-TTTAG
130 TCTTGAG
* *** *
21211 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATTCTTTAGAGGGAGAAAAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* ** * * *
21276 TATAATGAGAAGAGCTTGTTCGACCTATGGCTCGATTCATGACATTTTGAATCAGTAACGCCTCA
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTC-
21341 T-TTGAG
130 TCTTGAG
* * ** * * *
21347 GGATTAATATTTCAAATGGAGAGTTCATAATTAGAAGAACTCATCTAAAAAATGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * *
21412 CATAATAAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGTATCAGCGACGCCT-T
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
21476 GCTTGAG
131 -CTTGAG
* * * * * *
21483 GGATTAACCTTTTAAATGGATAGTTCATAATGAGAGGAACTCATCCGACACAGGAAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* ** * * ** * * *
21548 CATAATGAGAAGAACTTGTTTAACCTATCTCTCAATTCACGGTATTTCAAATCAGCGACACCT-T
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
21612 GCTTGAG
131 -CTTGAG
* * * *
21619 GGATTAAC-CTTCAAATAGAGAGCTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTT
1 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * ** ** * * *
21683 CATAACGAGAAGATCACGTTAAACCTATCACTCGATTCATGGA-ATTTTGAATCAGCGACGCCT
66 CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCA-CGACATTTCGAATCAGTGACGCCT
21746 TGCTTGTTCT
Statistics
Matches: 3914, Mismatches: 725, Indels: 179
0.81 0.15 0.04
Matches are distributed among these distances:
122 108 0.03
123 3 0.00
129 2 0.00
130 104 0.03
132 1 0.00
133 4 0.00
134 15 0.00
135 564 0.14
136 2957 0.76
137 155 0.04
138 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (136 bp):
GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
CATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCT
CTTGAG
Found at i:19071 original size:122 final size:122
Alignment explanation
Indices: 18854--19084 Score: 399
Period size: 122 Copynumber: 1.9 Consensus size: 122
18844 AGTTCATAAT
* * *
18854 TAGAAGATCTTGTTCGACCTATCGCTCAATTCACGACATTTTGAATCAGTAAAGCCTCTTTTGAG
1 TAGAAGATCTTGTTCAACCTATCGCTCAATTCACGAAATTTTGAATCAGTAAAGCCTCTTTTGAA
18919 GGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATTCGACTTCCTAAA
66 GGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATTCGACTTCCTAAA
* * *
18976 TAGAAGATCTTGTTCAACCTATCGCTCGATTCATGAAATTTTGAATCAGTAAATCCTCTTTTGAA
1 TAGAAGATCTTGTTCAACCTATCGCTCAATTCACGAAATTTTGAATCAGTAAAGCCTCTTTTGAA
*
19041 GGATTAATATTTGAAATGGAGAGTTCAAAATGAGAAGAACTCAT
66 GGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCAT
19085 GCGATTGAGG
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
122 102 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (122 bp):
TAGAAGATCTTGTTCAACCTATCGCTCAATTCACGAAATTTTGAATCAGTAAAGCCTCTTTTGAA
GGATTAATATTTCAAATGGAGAGTTCAAAATGAGAAGAACTCATTCGACTTCCTAAA
Found at i:21910 original size:187 final size:186
Alignment explanation
Indices: 21598--21937 Score: 448
Period size: 187 Copynumber: 1.8 Consensus size: 186
21588 GGTATTTCAA
* *
21598 ATCAGCGACACCTTGCTTGAGGGATTAACCTTCAAATAGAGAGCTCATAATGAGAAGAACTCATC
1 ATCAGCGACACCTCGCTTAAGGGATTAACCTTCAAATAGAGAGCTCATAATGAGAAGAACTCATC
* * * * *
21663 TGACAGAGGGAGAAGAAGTTCATAACGAGAAGATCACGTTAAACCTATCACTCGATTCATGGA-A
66 CGACAGAGGGAGAAAAACTTCATAACGAGAAGAGCACGTTAAACCTATCACTCAATTCAT-GACA
* * *
21727 TTTTGAATCAGCGACGCCTTGCTTGTTCTACCTATCACTCGAGTCATCTAATTTTGC
130 CTTGGAATCAGCGACGCCTCGCTTGTTCTACCTATCACTCGAGTCATCTAATTTTGC
* * * * *
21784 ATCAGTGACACCTCGCTTAAGGGATTAATCTTTCAAATGGAGAGTTCATAATGTGAAGAACTCAT
1 ATCAGCGACACCTCGCTTAAGGGATTAA-CCTTCAAATAGAGAGCTCATAATGAGAAGAACTCAT
* ** ** **
21849 CCGACAGAGGGAGAAAAACTTCATAATGAGAAGAGCTTGTTCGACCTATTGCTCAATTCATGACA
65 CCGACAGAGGGAGAAAAACTTCATAACGAGAAGAGCACGTTAAACCTATCACTCAATTCATGACA
*
21914 CTTGGAATCAGCGATGCCTCGCTT
130 CTTGGAATCAGCGACGCCTCGCTT
21938 TATGGATTAT
Statistics
Matches: 129, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
186 27 0.21
187 102 0.79
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (186 bp):
ATCAGCGACACCTCGCTTAAGGGATTAACCTTCAAATAGAGAGCTCATAATGAGAAGAACTCATC
CGACAGAGGGAGAAAAACTTCATAACGAGAAGAGCACGTTAAACCTATCACTCAATTCATGACAC
TTGGAATCAGCGACGCCTCGCTTGTTCTACCTATCACTCGAGTCATCTAATTTTGC
Found at i:22194 original size:136 final size:136
Alignment explanation
Indices: 21747--23296 Score: 1688
Period size: 136 Copynumber: 11.5 Consensus size: 136
21737 GCGACGCCTT
* * * * * * *
21747 GCTTGTTCTACCTATCACTCGAGTCATCTA-ATTTTGCATCAGTGACACCTCGCTTAAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCA-CGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * * *
21811 ATCTTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCGACAGAGGGAGAAAAACTTCATAAT
65 ATCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
21876 GAGAAGA
130 GAGAAGA
** * * * * * * * * *
21883 GCTTGTTCGACCTATTGCTCAATTCATGACACTTGGAATCAGCGATGCCTCGCTTTATGGATT-A
1 GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* * * *
21947 TCCTTTCAAATAGAGTGTTCATAATGAGAAGAATTCAT-CGATAGAGGGAGAAGAAGTTCCTAAT
66 T-CTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
22011 GAGAAGA
130 GAGAAGA
* * *
22018 GCTTGTTCAAACTATCGCTCGATTCACGGA-ATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCAC-GATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * ** *
22082 ATATTTCAAATAGAGAGTTCA-AATTGAGAAGAACTCATCTGATTGAGGGAAAAGAAGTTCATAA
65 ATCTTTCAAATAGAGAGTTCATAA-TGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
*
22146 TGAGAAAA
129 TGAGAAGA
* * * *** *
22154 TCTTGTTCGACCTATCACTCAATTCACGATATTTCAAATCAGTGACGCCTATATTTAGGGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
** * *** *
22219 GATTTCAAATAGAGAGTTCATAATGAGAAGAACACATCCTTTAGAGGGAGAAGAAGTTCATACTG
66 TCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATG
*
22284 ATAAGA
131 AGAAGA
* * * * *
22290 GCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACCCCTCACCTGAGGGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* * *
22355 -CATTTCAAGTGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAAT
66 TC-TTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
*
22419 AAGAAGA
130 GAGAAGA
** * * * * * * *
22426 GCTTGTTCGACCTATCGTTCGATTCATGACATTTTGAATCAGCGATGCCTCACTTAAGGGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* * * * * *
22491 CCTTTAAAATGGAGAGTTCATAATGAGAACAACTCATCCGACAGAGGGAGAAGAAGTTTATAATA
66 TCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATG
22556 AGAAGA
131 AGAAGA
* * * *
22562 GCTTGTTCGACCTATCACTCGATTCAAG-TCATTTTGAATCAGTGACACCTCGCTTGAGGTATTA
1 GCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * * *
22626 ATCTTTCAAATGGAGAGTTCATAATGAAAAGAACTCATCCGATAGAGGGAGAAAAAGTTCATAAT
65 ATCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
22691 GAGAAGA
130 GAGAAGA
* * * ** *
22698 GCTCGTTCGACCTATCGCTCAATTCACG-TCATTTCGAATCAACGTCGCCTCGCTTGAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * *
22762 ACCTTTCAAATAGAGAGTTAATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTAATAAT
65 ATCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
*
22827 GATAAGA
130 GAGAAGA
* ** * * * * * * *
22834 ACTTGTTAAACATATCGCTCGATTCACGGTATTTCGAATCAGTGACGCCTTGCGTAAGCGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* * *
22899 -CTTTCAAATCGAGAGTTCATAATGAGAACAACTCATCCAACAGAGGGAGAAGAAGTTCATAATG
66 TCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATG
*
22963 AGAACA
131 AGAAGA
* * * *
22969 GCTTGTTCGACCTATTACTCGAGTCACG-TCAATTCGAATCAGTGACACCTCGCTTGAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCACGAT-ATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
23033 ATCTTTCAAAT-GAAGAGTTCATAATGAGAAGAACTCATCCGACAGA--G-G--G-AG---AT-A
65 ATCTTTCAAATAG-AGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
23087 TGAGAAGA
129 TGAGAAGA
* ** ** * * *
23095 GCTTATTCGACCTATCGTTTAATTCACGACATTGT-GAATCAGCGATGCCTCGCTTGAGGGATT-
1 GCTTGTTCGACCTATCACTCGATTCACGATATT-TCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * * * *
23158 ATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCAACTGAGGTAGAACAAGTTCCTAA
65 AT-CTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
23223 TGAGAAGA
129 TGAGAAGA
* ** * *
23231 GCTTGTTCAACCTATCACTCGATTCATAACATTTCGTATCAGTGACGCCTCGCTTGAGGGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
23296 T
66 T
23297 TGTTCGGAAT
Statistics
Matches: 1186, Mismatches: 197, Indels: 61
0.82 0.14 0.04
Matches are distributed among these distances:
125 2 0.00
126 96 0.08
127 4 0.00
129 1 0.00
130 2 0.00
131 1 0.00
132 2 0.00
133 1 0.00
134 4 0.00
135 229 0.19
136 838 0.71
137 6 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (136 bp):
GCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
TCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATG
AGAAGA
Found at i:22758 original size:408 final size:408
Alignment explanation
Indices: 21747--27769 Score: 5473
Period size: 408 Copynumber: 15.0 Consensus size: 408
21737 GCGACGCCTT
* * * * * * *
21747 GCTTGTTCTACCTATCACTCGAGTCATC-TAATTTTGCATCAGTGACACCTCGCTTAAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCA-CGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * * *
21811 ATCTTTCAAATGGAGAGTTCATAATGTGAAGAACTCATCCGACAGAGGGAGAAAAACTTCATAAT
65 ATCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAAT
** * * * * * * *
21876 GAGAAGAGCTTGTTCGACCTATTGCTCAATTCATGACACTTGGAATCAGCGAT-GCCTCGCTTTA
130 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTG-TCGCCTCGCTTGA
* * * * * * *
21940 TGGATTATCCTTTCAAATAGAGTGTTCATAATGAGAAGAATTCAT-CGATAGAGGGAGAAGAAGT
194 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * *
22004 TCCTAATGAGAAGAGCTTGTTCAAACTATCGCTCGATTCACGGA-ATTTCGAATCAGTGACGCCT
259 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCAC-GACATTTCGAATCAGTGACGCCT
* ** * * **
22068 CGCTTGAGGGATTAATATTTCAAATAGAGAGTTCA-AATTGAGAAGAACTCATCTGATTGAGGGA
323 CACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAA-TGAGAAGAACTCATCCGACAGAGGGA
* *
22132 AAAGAAGTTCATAATGAGAAAA
387 GAAGAAGTTCATAATGAGAAGA
* * * *** *
22154 TCTTGTTCGACCTATCACTCAATTCACGAT-ATTTCAAATCAGTGACGCCTATATTTAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
** * * ** *
22218 AGATTTCAAATAGAGAGTTCATAATGAGAAGAACACATCCTTTAGAGGGAGAAGAAGTTCATACT
65 ATCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAAT
* * * * * * *
22283 GATAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACCCCTCACCTGAG
130 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGTCGCCTCGCTTGAG
* *
22348 GGATTAACATTTCAAGTGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTT
195 GGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTT
* * * * * *
22413 CATAATAAGAAGAGCTTGTTCGACCTATCGTTCGATTCATGACATTTTGAATCAGCGATGCCTCA
260 CATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCCTCA
* * *
22478 CTTAAGGGATTAACCTTTAAAATGGAGAGTTCATAATGAGAACAACTCATCCGACAGAGGGAGAA
325 CTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
* *
22543 GAAGTTTATAATAAGAAGA
390 GAAGTTCATAATGAGAAGA
* * * *
22562 GCTTGTTCGACCTATCACTCGATTCAAGTCATTTTGAATCAGTGACACCTCGCTTGAGGTATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* *
22627 TCTTTCAAATGGAGAGTTCATAATGAAAAGAACTCATCCGATAGAGGGAGAAAAAGTTCATAATG
66 TCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAATG
* * * **
22692 AGAAGAGCTCGTTCGACCTATCGCTCAATTCACGTCATTTCGAATCAACGTCGCCTCGCTTGAGG
131 AGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGTCGCCTCGCTTGAGG
* * * *
22757 GATTAACCTTTCAAATAGAGAGTTAATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTA
196 GATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTC
* * ** * ** **
22822 ATAATGATAAGAACTTGTTAAACATATCGCTCGATTCACGGTATTTCGAATCAGTGACGCCTTGC
261 ATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCCTCAC
* * * * * *
22887 GTAAGCGATTAA-CTTTCAAATCGAGAGTTCATAATGAGAACAACTCATCCAACAGAGGGAGAAG
326 TTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
*
22951 AAGTTCATAATGAGAACA
391 AAGTTCATAATGAGAAGA
* * * *
22969 GCTTGTTCGACCTATTACTCGAGTCACGTCAATTCGAATCAGTGACACCTCGCTTGAGGGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* *
23034 TCTTTCAAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGA--G-G--G-AG---AT-ATG
66 TCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAATG
* ** ** * *
23089 AGAAGAGCTTATTCGACCTATCGTTTAATTCACGACATTGT-GAATCAGCGAT-GCCTCGCTTGA
131 AGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATT-TCGAATCAGTG-TCGCCTCGCTTGA
* * * * * * *
23152 GGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCAACTGAGGTAGAACAAGT
194 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * ** *
23217 TCCTAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCATAACATTTCGTATCAGTGACGCCTC
259 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCCTC
* ** *
23282 GCTTGAGGGATTAA----T----T-----GTTCGGAATGAGAAGAACTCATCCGACTGAGGGAGA
324 ACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
* * *
23334 ATAAGTTCATAATGAAAAAA
389 AGAAGTTCATAATGAGAAGA
* * * * * * * *
23354 TCATGTTTGACCTATCACTCGATTCACGATAATTT-GTATCAGTGATGCCTCACTTTAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * *
23418 A-CATTTTAAATTGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAATAAGTT-ATAA
65 ATC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAA
* * ** * * * *
23481 TGATAACA-CTTGTTAAACCTATCGCTCGATTC-TGT-ATTTCAAATCA-TGAT-GCCTTGCTTG
129 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTG-TCGCCTCGCTTG
* * * * * *
23541 A-GAATTTAACCTTTCAAATAGAGTGTTCATAATGAGAACAACTCATCC-A-AGAGGGAGAAGAT
193 AGGGA-TTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
* * * * * * *
23603 GTTCATAATGAGAACAACTTGTTTGACCTA---CTAC-AGTCACGTCATTTCAAATCATTGA---
257 GTTCATAATGAGAAGAGCTTGTTCGACCTATCGCT-CGATTCACGACATTTCGAATCAGTGACGC
* * *
23661 --CACCT-A-GGATTAATCTTTCAAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGA--G
321 CTCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
23720 -G--G-AG---ATAATGAGAAGA
386 AGAAGAAGTTCATAATGAGAAGA
* * * * * * *
23736 GCTTATTCGACCTATCGCTCAATTCATGACATTGT-GAATCAGCGATGCCTCGCTTGAGGGATT-
1 GCTTGTTCGACCTATCACTCGATTCACGTCATT-TCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * * ** *
23799 ATCCTTTCAAATAGAGAGTTCATAATGAGAA-AACACATCCAACGGAGGGAGAAGAAGTTCCTAA
65 AT-CTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAA
* ** * *
23863 TGAGAAGAGCTTGTTCAACCTATCACTCGATTCACAACATTTTGAATCAGTGACGCCTCGCTTGA
129 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGTCGCCTCGCTTGA
* * *
23928 GGG------A-TT--AAT----AGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAATAAGT
194 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * * * *
23980 TCATAATGAAAAAAATGATT-TTTGACCTATCACTTGATTCACGATAATTT-GAATTAGTGATGC
259 TCATAATG-AGAAGA-GCTTGTTCGACCTATCGCTCGATTCACGA-CATTTCGAATCAGTGACGC
* * * * *
24043 CTCACTTTAGGGATTAGCATTTCAAATTGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGG
321 CTCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGG
* *
24108 AGAAGAAGTTAATAATGATAAGA
386 AGAAGAAGTTCATAATGAGAAGA
* * * * *
24131 GCTTGTT--ACCTATCGCTCGA-TCACGT-ATTTCAAATCATTGATGCCTTGCTTGA-GG-TTAA
1 GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
24190 -CTTTCAAAT-GAGAGTTCATAATGAGAAGAACTCATCCGATAGA--G-G--G-AG---ATAATG
66 TCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAATG
* * * ** * *
24244 AGAACACCTTGTTCCACCTATTGCTCAATTCAGGAT-ATTTCGAATCAGTGAT-GCCTCGCTTGA
131 AGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTG-TCGCCTCGCTTGA
* * *
24307 GGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
194 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * * * * * * *
24372 TCATAATGAAAATAATCTTGTTTGACCTATCACTTGATCCACGATATTTTGAATCAGTGACACCT
259 TCATAATGAGAA-GAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCCT
* * * * * *
24437 CACTTTAGGAATTAACATTTCAAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGGG
323 CACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAG
*
24502 AAGAAGTTCATAATAAGAAGA
388 AAGAAGTTCATAATGAGAAGA
* * * * * * *
24523 GCTTGTTCAACCTATCACTCAAGTCACGTCATTTCGAATCAGAGACACCTCGCATGAGGTATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* * * *
24588 TATTTCAATTGGAGAGTCCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTAATAATG
66 TCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAATG
* ** * * *
24653 ATAAGAGCTTGTTAAACTTATCGA-TCGATTCACGGT-ATTTCGAATCAGTGAT-ACCTTGCTTG
131 AGAAGAGCTTGTTCGACCTATC-ACTCGATTCAC-GTCATTTCGAATCAGTG-TCGCCTCGCTTG
* * * * *
24715 AGCGATTAACCTTTCAAATGGAGAGTTCATAATGAGAACAACTCATCCAACAGAGGGAGAAGATG
193 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * * *
24780 TTCATAATGAGAACAACTTGTTCGACCTA-CTACTCGAGTCATGTCATTTCGAATCAGTGACACC
258 TTCATAATGAGAAGAGCTTGTTCGACCTATC-GCTCGATTCACGACATTTCGAATCAGTGACGCC
* * * * * * *
24844 TCGCTTGAAGGATTAATCTTTCAAATGAATAGTTCAAAATGAGAAGAACTTATCCGAC--A--GA
322 TCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
*
24905 G-AG-AG---ATAATAAGAAGA
387 GAAGAAGTTCATAATGAGAAGA
* ** * ** * *
24922 CCTTGTTCGACCTATTGCTCAATTCACAACATTTCGAATCAGCGATGCCTCGCTTGAGGGATT-A
1 GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* * *
24986 TCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCCTAAT
66 T-CTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAAT
* * * * *
25051 GAGAAGAGCTTGTTCAACCTATCACACGATTCACAAT-ATTTTGAATCAGTGAT-GCCTCACTTG
130 GAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GTCATTTCGAATCAGTG-TCGCCTCGCTTG
* * * * * * **
25114 AGGGATTAATAGTTCAGATGGAGAGTTCAAAATGAGAAGAACTCATCTGACTGAGGGAGAATTAG
193 AGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * * * *
25179 TTCATAATGAAAAAACTCTTGTTTGACCTATCACTCGATTCACGATATTTCGAATCTGTGATGCC
258 TTCATAATGAGAAGA-GCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCC
* * * ** * *
25244 TCACTTTAGGGATTAACATTTCAAATTGAGAGTTCATTTTGAGAAGTACTCATCC-TCTAGAGGG
322 TCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AGAGGG
25308 AGAAGAAGTTCATAATGAGAAGA
386 AGAAGAAGTTCATAATGAGAAGA
* * * * * * * *
25331 GCTTATTCGACCTATCGCTTGATTCATGACATTTTGAATCAGTGACCCCTCGCTTAAGGGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
* * *
25396 -CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGATAAGAAGTTCATAAT
66 TC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAAT
* * * * *
25460 AAGAAGAGCTTGTTCGACCTATCACTCGAGTCACGTCATTTTGAATCAGTGACACCTCG-TATGA
130 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGTCGCCTCGCT-TGA
*
25524 GGTATTAATC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
194 GGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * ** * **
25588 TTAATAATGATAAGAGCTTCTTAAACCTATCGCTCGATTCATGGTATTTCGAATCAGTGACGCCA
258 TTCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCC-
* ** * * * *
25653 T-GCTTGAACGATTAACCTTTCAAATAGAGAGTTCATAATGAGAACAACTCATACAACAGAGGGA
322 TCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
* *
25717 GTAGAAGTTCATAATGAGAACA
387 GAAGAAGTTCATAATGAGAAGA
* * * * *
25739 ACTTGTTCGACCTA-CTACTCGAGTCACGTCATTTTGAATCAGTGACACCTCACTTGAGGGATTA
1 GCTTGTTCGACCTATC-ACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* *
25803 ATCATTCAAATGAAGAGTTCATAATGAGAAGAACTCATCCGATAGA--G-G--G-AG---ATAAT
65 ATCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAAT
* * * * * * *
25859 GAGAAGACCTTGTTCGACCTATTACTCAATTCACGACATTTTGAATCAGCGAT-GCATCGCTTGA
130 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTG-TCGCCTCGCTTGA
* * * * *
25923 GGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAATAACTCATACGACAGAGGGAGAAGAAGT
194 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * * *
25988 TCCTAATGAGAAGAGCTTGTTCAGTA--TATCACTCGATTCACAACATTTCGAATCAATGATGCC
259 TCATAATGAGAAGAGCTTGTTC-G-ACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCC
* **** * * * * *
26051 TCACTTGAGTGATTAGTAGTTCAAAAGGAGAGTTCAGAATGAGAAGAACTCATCCAACTGAAGGA
322 TCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
* *
26116 GAATAAGTTCATAATGA-AATTAA
387 GAAGAAGTTCATAATGAGAA--GA
* * * * * ** *
26139 TCCTCTTTGACCTATCACTCGATTCACGAT-ATTTTGAATCAGTGATACCTCGCTTTAGGGATTA
1 GCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
** * *
26203 A-CATTTCAAATTAAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
65 ATC-TTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAA
* * * *
26267 TAAGAAGAGCTTGTTCGACCTATCACTCGAGTCACGTCATTTCGAATCAGTGACACCTCGCTTGA
129 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGTCGCCTCGCTTGA
* * * * * *
26332 GGTATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAGCTCATCCAACAAAGGGAGAAAAAGT
194 GGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGT
* * * *
26397 TCATAATGAGAAGAGTTTGTTCGACCTATCGCTCAATTCACGACATTTCGAATAAGCGACGCCTC
259 TCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCCTC
* * *
26462 GCTTGAGGGATTAACCTTTCAAATAGAAAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
324 ACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
* *
26527 AGAAGTTAATAATGATAAGA
389 AGAAGTTCATAATGAGAAGA
* ** * * * * * *
26547 GGTTGTTAAACCTATCGCTCGATTCACGGT-ATTTTGAATTAGTGATGCCTTGCTTGAGTGATTA
1 GCTTGTTCGACCTATCACTCGATTCAC-GTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTA
* * * * ** * *
26611 ACCTTTCAAATAGAGAGTTCATAATGAGAACAACTCATCCAACCGAGGGTGAAGAAGTTCATACT
65 ATCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAAT
* * * * ** * * *
26676 GAGAATAGCTTGCTCGACCTATTACTCGAGTCACACCATTCCGAATCACTGAT-ACCTCGCTTGA
130 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTG-TCGCCTCGCTTGA
** * * *
26740 GGGATTAATC-TTTCAAATTAAAAGTTCATAATGAGAAGAACTCATCTGACA-A---AG--GGAG
194 GGGATTAA-CATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* * * * * * *
26798 ---ATAACGAGAAGAGCTTGTTCGACCTGTCGCTCAATTCACGATATTTTGAATCAGCGATC-CT
258 TTCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGA-CGCC
* * * * *
26859 TCGCTTGAGGGATTATCCTTTCAAATAGAGAGTTCATAATGAGAAGAAATCATCCTACAGAGGGA
322 TCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
26924 GAAGAAGTTCATAATGAGAAGA
387 GAAGAAGTTCATAATGAGAAGA
* * * *** * *
26946 GCTTGGTCAACCTATCACTCAATTCAAAAC-TTTCG-ATCAGTGACGCCTCTCATGAGGGATTAA
1 GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
** * * * * * *
27009 TAGTCCAAATGGAGAGTTCAAAATGAGAATAACTCATGCGACT-GAGGGAGAATAAGTTCATATT
66 TCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGA-TAGAGGGAGAAGAAGTTCATAAT
* * * * * *
27073 GAAAAAAAAACTTGTTTGACCTATCACTCGATTCACGAT-ATTTTGAATCAGTGAT-GCCTCACT
130 G--AGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTG-TCGCCTCGCT
* ** * * * ** *
27136 TTAGGGATTAACATTTCAAATTAAGACTTCATAATGAGAAGAAATCAT-TGTTTAGAGGGAGAAT
191 TGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCG-ACAGAGGGAGAAG
* * *
27200 AAGTTCATAATGAGAAGAGCTTGTTTGACCTATCGCTCGATTCACGACATTTCGAATCAGCGATG
255 AAGTTCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACG
* * * *
27265 CCTCGCTTGAGGGATTAACCTTTTAAATGGATAGTTCATGATGAGAAGAACTCATCCGACAGAGG
320 CCTCACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGG
*
27330 GAGACGAAGTTCATAATGAGAAGA
385 GAGAAGAAGTTCATAATGAGAAGA
* * * * * *
27354 GCTTGTT-GACCTATAACTCGAGTCACGAT-ATTTC-ATATCAGTGACACATCTCTTGTGGGATT
1 GCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGA-ATCAGTGACGCCTCGCTTGAGGGATT
** * * *
27416 GACAT-TTTTGAA-GGAGCGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCTT
64 -A-ATCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCAT
* * ** * ** * * * *
27479 AATGAGAAGAACTTGTTTGACCTATTGCTAGATTCACAACACTTCGAATCAATAAT-GCCTCGAT
127 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGT-GTCGCCTCGCT
* * * *
27543 GGAGGGATTAACATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGGGAAGA
191 TGAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGA
* * * ** * * * * * * *
27607 AGTTCATAATGAGATGAACTTGTTTGACCTATTACTAGATTTACAACACTTCGAATCAATAATGC
256 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGC
* ** * *
27672 CTCGA-TAGAGGGATTAATATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGG
321 CTC-ACTTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGG
*
27735 GAGAAGAAATTCATAATGAGAAGA
385 GAGAAGAAGTTCATAATGAGAAGA
*
27759 ACTTGTTCGAC
1 GCTTGTTCGAC
27770 TAATTGCTAG
Statistics
Matches: 4599, Mismatches: 823, Indels: 389
0.79 0.14 0.07
Matches are distributed among these distances:
373 22 0.00
374 1 0.00
375 20 0.00
376 13 0.00
377 5 0.00
378 7 0.00
379 76 0.02
380 7 0.00
381 27 0.01
382 93 0.02
383 24 0.01
384 5 0.00
385 167 0.04
386 67 0.01
387 20 0.00
388 60 0.01
389 7 0.00
390 59 0.01
391 69 0.02
392 177 0.04
393 32 0.01
394 19 0.00
395 23 0.01
396 20 0.00
397 252 0.05
398 22 0.00
399 711 0.15
400 209 0.05
401 6 0.00
402 9 0.00
403 7 0.00
404 8 0.00
405 71 0.02
406 117 0.03
407 438 0.10
408 1055 0.23
409 664 0.14
410 8 0.00
411 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (408 bp):
GCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTAA
TCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAATG
AGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGTCGCCTCGCTTGAGG
GATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTC
ATAATGAGAAGAGCTTGTTCGACCTATCGCTCGATTCACGACATTTCGAATCAGTGACGCCTCAC
TTGAGGGATTAACCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
AAGTTCATAATGAGAAGA
Found at i:23404 original size:123 final size:123
Alignment explanation
Indices: 23181--23418 Score: 318
Period size: 123 Copynumber: 1.9 Consensus size: 123
23171 GAGAGTTCAT
* * * * *
23181 AATGAGAAGAACTCATCCAACTGAGGTAGAACAAGTTCCTAATGAGAAGAGCTTGTTCAACCTAT
1 AATGAGAAGAACTCATCCAACTGAGGGAGAACAAGTTCATAATGAAAAAAGCATGTTCAACCTAT
* *
23246 CACTCGATTCATAACATTTCGTATCAGTGACGCCTCGCTTGAGGGATTAATTGTTCGG
66 CACTCGATTCAGAACATTTCGTATCAGTGACGCCTCACTTGAGGGATTAATTGTTCGG
* * * **
23304 AATGAGAAGAACTCATCCGACTGAGGGAGAATAAGTTCATAATGAAAAAATCATGTTTGACCTAT
1 AATGAGAAGAACTCATCCAACTGAGGGAGAACAAGTTCATAATGAAAAAAGCATGTTCAACCTAT
* *
23369 CACTCGATTCACGATA-ATTT-GTATCAGTGATGCCTCACTTTAGGGATTAA
66 CACTCGATTCA-GA-ACATTTCGTATCAGTGACGCCTCACTTGAGGGATTAA
23419 CATTTTAAAT
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
123 93 0.94
124 5 0.05
125 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (123 bp):
AATGAGAAGAACTCATCCAACTGAGGGAGAACAAGTTCATAATGAAAAAAGCATGTTCAACCTAT
CACTCGATTCAGAACATTTCGTATCAGTGACGCCTCACTTGAGGGATTAATTGTTCGG
Found at i:24039 original size:124 final size:122
Alignment explanation
Indices: 23815--24058 Score: 283
Period size: 124 Copynumber: 2.0 Consensus size: 122
23805 TCAAATAGAG
* * * * *
23815 AGTTCATAATGAGAAAACACATCCAACGGAGGGAGAAGAAGTTCCTAATGAGAAGAGCTTGTTCA
1 AGTTCAAAATGAGAAAACACATCCAACGGAGGGAGAAGAAGTTCATAATGAAAAAAGATTGTTCA
* *
23880 ACCTATCACTCGATTCACAACATTTTGAATCAGTGACGCCTCGCTTGAGGGATTAAT
66 ACCTATCACTCGATTCACAACAATTTGAATCAGTGACGCCTCACTTGAGGGATTAAT
* * * *
23937 AGTTCAAAATGAGAAGAACTCATCCGACTGAGGGAGAATAAGTTCATAATGAAAAAAATGATT-T
1 AGTTCAAAATGAGAA-AACACATCCAACGGAGGGAGAAGAAGTTCATAATG-AAAAAA-GATTGT
** * * * * * *
24001 TTGACCTATCACTTGATTCACGATAATTTGAATTAGTGATGCCTCACTTTAGGGATTA
63 TCAACCTATCACTCGATTCACAACAATTTGAATCAGTGACGCCTCACTTGAGGGATTA
24059 GCATTTCAAA
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
122 14 0.14
123 30 0.30
124 53 0.53
125 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (122 bp):
AGTTCAAAATGAGAAAACACATCCAACGGAGGGAGAAGAAGTTCATAATGAAAAAAGATTGTTCA
ACCTATCACTCGATTCACAACAATTTGAATCAGTGACGCCTCACTTGAGGGATTAAT
Found at i:24603 original size:136 final size:136
Alignment explanation
Indices: 24238--27769 Score: 3273
Period size: 136 Copynumber: 26.2 Consensus size: 136
24228 ATAGAGGGAG
* * * ** * * **
24238 ATAATGAGAACACCTTGTTCCACCTATTGCTCAATTCAGGAT-ATTTCGAATCAGTGATGCCTCG
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACACCTCG
* *
24302 CTTGAGGGATT-ATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
65 CTTGAGGGATTAAT-ATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
24366 AGAAGTTC
129 AGAAGTTC
* * * * * * *
24374 ATAATGAAAATAATCTTGTTTGACCTATCACTTGATCCACGAT-ATTTTGAATCAGTGACACCTC
1 ATAATGAGAA-GAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACACCTC
* * * * * * *
24438 ACTTTAGGAATTAACATTTCAAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGGGA
64 GCTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
24503 AGAAGTTC
129 AGAAGTTC
* * * * *
24511 ATAATAAGAAGAGCTTGTTCAACCTATCACTCAAGTCACGTCATTTCGAATCAGAGACACCTCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* * * * *
24576 ATGAGGTATTAATATTTCAATTGGAGAGTCCATAATGAGAAGAACTCATCCGATAGAGGGAGAAG
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
*
24641 AAGTTA
131 AAGTTC
* ** * * *
24647 ATAATGATAAGAGCTTGTTAAACTTATCGA-TCGATTCACGGT-ATTTCGAATCAGTGATACCTT
1 ATAATGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCAC-GTCATTTCGAATCAGTGACACCTC
* ** * *
24710 GCTTGAGCGATTAACCTTTCAAATGGAGAGTTCATAATGAGAACAACTCATCCAACAGAGGGAGA
64 GCTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
*
24775 AGATGTTC
129 AGAAGTTC
* * * *
24783 ATAATGAGAACAACTTGTTCGACCTA-CTACTCGAGTCATGTCATTTCGAATCAGTGACACCTCG
1 ATAATGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGTCATTTCGAATCAGTGACACCTCG
* * * * * *
24847 CTTGAAGGATTAATCTTTCAAATGAATAGTTCAAAATGAGAAGAACTTATCCGAC--A--GAG-A
65 CTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
24907 G-AG---
130 GAAGTTC
* * ** * ** * **
24910 ATAATAAGAAGACCTTGTTCGACCTATTGCTCAATTCACAACATTTCGAATCAGCGATGCCTCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* *
24975 TTGAGGGATT-ATCCTTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
66 TTGAGGGATTAAT-ATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
25039 GAAGTTC
130 GAAGTTC
* * * * * ** *
25046 CTAATGAGAAGAGCTTGTTCAACCTATCACACGATTCACAAT-ATTTTGAATCAGTGATGCCTCA
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GTCATTTCGAATCAGTGACACCTCG
* * * * *
25110 CTTGAGGGATTAATAGTTCAGATGGAGAGTTCAAAATGAGAAGAACTCATCTGACTGAGGGAGAA
65 CTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
**
25175 TTAGTTC
130 GAAGTTC
* * * * * **
25182 ATAATGAAAAAACTCTTGTTTGACCTATCACTCGATTCACGAT-ATTTCGAATCTGTGATGCCTC
1 ATAATGAGAAGA-GCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACACCTC
* * * * ** * *
25246 ACTTTAGGGATTAACATTTCAAATTGAGAGTTCATTTTGAGAAGTACTCATCC-TCTAGAGGGAG
64 GCTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AGAGGGAG
25310 AAGAAGTTC
128 AAGAAGTTC
* * * * * * *
25319 ATAATGAGAAGAGCTTATTCGACCTATCGCTTGATTCATGACATTTTGAATCAGTGACCCCTCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* * * *
25384 TTAAGGGATTAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGATAAG
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
25449 AAGTTC
131 AAGTTC
* * *
25455 ATAATAAGAAGAGCTTGTTCGACCTATCACTCGAGTCACGTCATTTTGAATCAGTGACACCTCG-
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* *
25519 TATGAGGTATTAATCTTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
66 T-TGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
*
25584 GAAGTTA
130 GAAGTTC
* * ** * * *
25591 ATAATGATAAGAGCTTCTTAAACCTATCGCTCGATTCATGGT-ATTTCGAATCAGTGACGCCAT-
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCA-CGTCATTTCGAATCAGTGACACC-TC
** ** * * * * *
25654 GCTTGAACGATTAACCTTTCAAATAGAGAGTTCATAATGAGAACAACTCATACAACAGAGGGAGT
64 GCTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
25719 AGAAGTTC
129 AGAAGTTC
* * * * *
25727 ATAATGAGAACAACTTGTTCGACCTA-CTACTCGAGTCACGTCATTTTGAATCAGTGACACCTCA
1 ATAATGAGAAGAGCTTGTTCGACCTATC-ACTCGATTCACGTCATTTCGAATCAGTGACACCTCG
* *
25791 CTTGAGGGATTAATCA-TTCAAATGAAGAGTTCATAATGAGAAGAACTCATCCGATAGA--G-G-
65 CTTGAGGGATTAAT-ATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
25851 -G-AG---
129 AGAAGTTC
* * * * * * ** *
25854 ATAATGAGAAGACCTTGTTCGACCTATTACTCAATTCACGACATTTTGAATCAGCGATGCATCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* * * *
25919 TTGAGGGATT-ATCCTTTCAAATAGAGAGTTCATAATGAGAATAACTCATACGACAGAGGGAGAA
66 TTGAGGGATTAAT-ATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
25983 GAAGTTC
130 GAAGTTC
* ** * **
25990 CTAATGAGAAGAGCTTGTTCAGTA--TATCACTCGATTCACAACATTTCGAATCAATGATGCCTC
1 ATAATGAGAAGAGCTTGTTC-G-ACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTC
* * * * * * * * *
26053 ACTTGAGTGATTAGTAGTTCAAAAGGAGAGTTCAGAATGAGAAGAACTCATCCAACTGAAGGAGA
64 GCTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
*
26118 ATAAGTTC
129 AGAAGTTC
* * * * * * *
26126 ATAATGA-AATTAATCCTCTTTGACCTATCACTCGATTCACGAT-ATTTTGAATCAGTGATACCT
1 ATAATGAGAA--GAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACACCT
* * ** *
26189 CGCTTTAGGGATTAACATTTCAAATTAAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAG
63 CGCTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAG
26254 AAGAAGTTC
128 AAGAAGTTC
* *
26263 ATAATAAGAAGAGCTTGTTCGACCTATCACTCGAGTCACGTCATTTCGAATCAGTGACACCTCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* * * * *
26328 TTGAGGTATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAGCTCATCCAACAAAGGGAGAAA
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
26393 AAGTTC
131 AAGTTC
* * * * * * *
26399 ATAATGAGAAGAGTTTGTTCGACCTATCGCTCAATTCACGACATTTCGAATAAGCGACGCCTCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
** * *
26464 TTGAGGGATTAACCTTTCAAATAGAAAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
*
26529 AAGTTA
131 AAGTTC
* * ** * * * ** *
26535 ATAATGATAAGAGGTTGTTAAACCTATCGCTCGATTCACGGT-ATTTTGAATTAGTGATGCCTTG
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-GTCATTTCGAATCAGTGACACCTCG
* ** * * * * *
26599 CTTGAGTGATTAACCTTTCAAATAGAGAGTTCATAATGAGAACAACTCATCCAACCGAGGGTGAA
65 CTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
26664 GAAGTTC
130 GAAGTTC
* * * * * ** * * *
26671 ATACTGAGAATAGCTTGCTCGACCTATTACTCGAGTCACACCATTCCGAATCACTGATACCTCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* ** * *
26736 TTGAGGGATTAATCTTTCAAATTAAAAGTTCATAATGAGAAGAACTCATCTGACA-A---AG--G
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
*
26795 GAG---
131 AAGTTC
* * * * * * *
26798 ATAACGAGAAGAGCTTGTTCGACCTGTCGCTCAATTCACGAT-ATTTTGAATCAGCGATC-CTTC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGA-CACCTC
* * * *
26861 GCTTGAGGGATT-ATCCTTTCAAATAGAGAGTTCATAATGAGAAGAAATCATCCTACAGAGGGAG
64 GCTTGAGGGATTAAT-ATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAG
26925 AAGAAGTTC
128 AAGAAGTTC
* * * *** * *
26934 ATAATGAGAAGAGCTTGGTCAACCTATCACTCAATTCAAAAC-TTTCG-ATCAGTGACGCCTCTC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* * * * * * * *
26997 ATGAGGGATTAATAGTCCAAATGGAGAGTTCAAAATGAGAATAACTCATGCGACTGAGGGAGAAT
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
27062 AAGTTC
131 AAGTTC
* * * * * * **
27068 ATATTGAAAAAAAAACTTGTTTGACCTATCACTCGATTCACGAT-ATTTTGAATCAGTGATGCCT
1 ATAATG--AGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGAATCAGTGACACCT
* * * ** * * * **
27132 CACTTTAGGGATTAACATTTCAAATTAAGACTTCATAATGAGAAGAAATCAT-TGTTTAGAGGGA
63 CGCTTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCG-ACAGAGGGA
*
27196 GAATAAGTTC
127 GAAGAAGTTC
* * * * **
27206 ATAATGAGAAGAGCTTGTTTGACCTATCGCTCGATTCACGACATTTCGAATCAGCGATGCCTCGC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
** * * * *
27271 TTGAGGGATTAACCTTTTAAATGGATAGTTCATGATGAGAAGAACTCATCCGACAGAGGGAGACG
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
27336 AAGTTC
131 AAGTTC
* * *
27342 ATAATGAGAAGAGCTTGTT-GACCTATAACTCGAGTCACGAT-ATTTC-ATATCAGTGACACATC
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACG-TCATTTCGA-ATCAGTGACACCTC
* * ** *
27404 TCTTGTGGGATTGACAT-TTTTGAA-GGAGCGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
64 GCTTGAGGGATT-A-ATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGA
27467 GAAGAAGTTC
127 GAAGAAGTTC
* * * ** * ** * * * ** *
27477 TTAATGAGAAGAACTTGTTTGACCTATTGCTAGATTCACAACACTTCGAATCAATAATGCCTCGA
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* * * * *
27542 TGGAGGGATTAACATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGGGAAG
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
27606 AAGTTC
131 AAGTTC
* * * * * * ** * * * ** *
27612 ATAATGAGATGAACTTGTTTGACCTATTACTAGATTTACAACACTTCGAATCAATAATGCCTCGA
1 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
* * *
27677 TAGAGGGATTAATATTTC-GATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGAGAAG
66 TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
*
27741 AAATTC
131 AAGTTC
*
27747 ATAATGAGAAGAACTTGTTCGAC
1 ATAATGAGAAGAGCTTGTTCGAC
27770 TAATTGCTAG
Statistics
Matches: 2778, Mismatches: 530, Indels: 177
0.80 0.15 0.05
Matches are distributed among these distances:
126 7 0.00
127 288 0.10
128 1 0.00
129 2 0.00
130 7 0.00
131 8 0.00
132 7 0.00
133 9 0.00
134 77 0.03
135 323 0.12
136 1627 0.59
137 345 0.12
138 77 0.03
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (136 bp):
ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGTCATTTCGAATCAGTGACACCTCGC
TTGAGGGATTAATATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
AAGTTC
Found at i:27444 original size:135 final size:136
Alignment explanation
Indices: 26798--27765 Score: 898
Period size: 135 Copynumber: 7.1 Consensus size: 136
26788 ACAAAGGGAG
* * * * * * * * *
26798 ATAACGAGAAGAGCTTGTTCGACCTGTCGCTCAATTCACGATATTTTGAATCAGCGAT-CCTTCG
1 ATAATGAGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGAATCAGTGATGCC-TCG
* * * * * *
26862 CTTGAGGGATTATC-CTTTCAAATAGAGAGTTCATAATGAGAAGAAATCATCCTACAGAGGGAGA
65 CTTGAGGGATTAACATTTTCGAA-GGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGA
26926 AGAAGTTC
129 AGAAGTTC
* * ** * ** * *
26934 ATAATGAGAAGAGCTTGGTCAACCTATCACTCAATTCAAAAC-TTTCG-ATCAGTGACGCCTCTC
1 ATAATGAGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGAATCAGTGATGCCTCGC
* * * * * * * * *
26997 ATGAGGGATTAATA-GTCCAAATGGAGAGTTCAAAATGAGAATAACTCATGCGACTGAGGGAGAA
66 TTGAGGGATTAACATTTTCGAA-GGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
*
27061 TAAGTTC
130 GAAGTTC
* * * * *
27068 ATATTGAAAAAAAAACTTGTTTGACCTATCACTCGATTCACGATATTTTGAATCAGTGATGCCTC
1 ATAATG--AGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGAATCAGTGATGCCTC
* * * ** * * * **
27133 ACTTTAGGGATTAACA-TTTCAAATTAAGACTTCATAATGAGAAGAAATCAT-TGTTTAGAGGGA
64 GCTTGAGGGATTAACATTTTCGAA-GGAGAGTTCATAATGAGAAGAACTCATCCG-ACAGAGGGA
*
27196 GAATAAGTTC
127 GAAGAAGTTC
* * *
27206 ATAATGAGAAGAGCTTGTTTGACCTATCGCTCGATTCACGACATTTCGAATCAGCGATGCCTCGC
1 ATAATGAGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGAATCAGTGATGCCTCGC
* * * * *
27271 TTGAGGGATTAACCTTTT-AAATGGATAGTTCATGATGAGAAGAACTCATCCGACAGAGGGAGAC
66 TTGAGGGATTAACATTTTCGAA-GGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
27335 GAAGTTC
130 GAAGTTC
* * * * ** * *
27342 ATAATGAGAAGAGCTTG-TTGACCTATAACTCGAGTCACGATATTTC-ATATCAGTGACACATCT
1 ATAATGAGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGA-ATCAGTGATGCCTCG
* * * *
27405 CTTGTGGGATTGACATTTTTGAAGGAGCGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
65 CTTGAGGGATTAACATTTTCGAAGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAA
27470 GAAGTTC
130 GAAGTTC
* ** * * * * * *
27477 TTAATGAGAAGAACTTGTTTGACCTATTGCTAGATTCACAACACTTCGAATCAATAATGCCTCGA
1 ATAATGAGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGAATCAGTGATGCCTCGC
* * * *
27542 TGGAGGGATTAACA-TTTCGATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGGGAAG
66 TTGAGGGATTAACATTTTCGAAGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
27606 AAGTTC
131 AAGTTC
* * * * * * * * *
27612 ATAATGAGATGAACTTGTTTGACCTATTACTAGATTTACAACACTTCGAATCAATAATGCCTCGA
1 ATAATGAGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGAATCAGTGATGCCTCGC
* * * *
27677 TAGAGGGATTAATA-TTTCGATGGAGAGTTCATAATGAGAAGAACTCGTCCGACAGAGGGAGAAG
66 TTGAGGGATTAACATTTTCGAAGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
*
27741 AAATTC
131 AAGTTC
27747 ATAATGAGAAGAACTTGTT
1 ATAATGAGAAGAACTTGTT
27766 CGACTAATTG
Statistics
Matches: 693, Mismatches: 126, Indels: 27
0.82 0.15 0.03
Matches are distributed among these distances:
134 73 0.11
135 313 0.45
136 224 0.32
137 10 0.01
138 73 0.11
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.27
Consensus pattern (136 bp):
ATAATGAGAAGAACTTGTTTGACCTATCACTCGATTCACGACATTTCGAATCAGTGATGCCTCGC
TTGAGGGATTAACATTTTCGAAGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG
AAGTTC
Found at i:31511 original size:14 final size:13
Alignment explanation
Indices: 31492--31522 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
31482 GTCAGCCCGA
31492 TGACTTTGACCAGT
1 TGACTTTGACCA-T
31506 TGACTTTGACCAT
1 TGACTTTGACCAT
31519 TGAC
1 TGAC
31523 CAACAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (13 bp):
TGACTTTGACCAT
Found at i:32567 original size:27 final size:27
Alignment explanation
Indices: 32510--32565 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
32500 ATTACCTATG
*
32510 AAGTGTAAAAAGACCAAAATGCCCCTA
1 AAGTGTAAAAAGACCAAAATACCCCTA
* * *
32537 AAGTGTAAAATGACATAAAATACCTCTA
1 AAGTGTAAAAAGAC-CAAAATACCCCTA
32565 A
1 A
32566 GTCCTGGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.20
Consensus pattern (27 bp):
AAGTGTAAAAAGACCAAAATACCCCTA
Found at i:34312 original size:77 final size:76
Alignment explanation
Indices: 34200--34345 Score: 163
Period size: 76 Copynumber: 1.9 Consensus size: 76
34190 ATATAGTAAG
* * *
34200 TAAACGTTAAAAATGTAATTTTGATTACAACTCTTTTAAT-TGATTTTTAATTCAGAA-TAATT-
1 TAAACATTAAAAATGTAATTTAGATTACAACTC-TTTAATGT-ATATTTAATT-AGAATTAATTA
34262 AATAAGATTTTAAA
63 AATAAGATTTTAAA
* * * * *
34276 TAAACATTAAAGATTGTAATTTAGGTTATAAGTCTTTAATGTATATTTAATTTGAATTAATTAAA
1 TAAACATTAAA-AATGTAATTTAGATTACAACTCTTTAATGTATATTTAATTAGAATTAATTAAA
34341 TAAGA
65 TAAGA
34346 AATTTATTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
75 3 0.05
76 30 0.52
77 25 0.43
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (76 bp):
TAAACATTAAAAATGTAATTTAGATTACAACTCTTTAATGTATATTTAATTAGAATTAATTAAAT
AAGATTTTAAA
Found at i:42660 original size:32 final size:33
Alignment explanation
Indices: 42619--42682 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
42609 CATCCTATTT
42619 GATCTCCTG-AAAACTTGATACTATGAATGTTC
1 GATCTCCTGAAAAACTTGATACTATGAATGTTC
42651 GATCTCCTGAAAAACTTGATACTATGAATGTT
1 GATCTCCTGAAAAACTTGATACTATGAATGTT
42683 TCCTATTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 9 0.29
33 22 0.71
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (33 bp):
GATCTCCTGAAAAACTTGATACTATGAATGTTC
Found at i:46623 original size:14 final size:13
Alignment explanation
Indices: 46594--46630 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
46584 ATGGTTTTCT
46594 TTATTT-TTTA-A
1 TTATTTATTTATA
46605 TTATTTCATTTATA
1 TTATTT-ATTTATA
46619 TTATTTATTTAT
1 TTATTTATTTAT
46631 TTTTCATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.26
13 10 0.43
14 7 0.30
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTTATTTATA
Found at i:51381 original size:24 final size:23
Alignment explanation
Indices: 51337--51384 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
51327 TTTCATAATC
*
51337 TCTTATTATCATGCTTGAATTAA
1 TCTTATTATCATGCTTAAATTAA
51360 TCTTATTATGCATG-TATAAATTAA
1 TCTTATTAT-CATGCT-TAAATTAA
51384 T
1 T
51385 TTGGGTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.48
Consensus pattern (23 bp):
TCTTATTATCATGCTTAAATTAA
Found at i:52736 original size:130 final size:125
Alignment explanation
Indices: 52515--52792 Score: 344
Period size: 130 Copynumber: 2.2 Consensus size: 125
52505 TATCCCGATT
* * *
52515 GAAATGAAGAGATATCATTATTTCGTCTTAAAATGTGATTCGAGTGAAAACGATAAGATCTAATG
1 GAAATGAAGAGATATTATTATTTCGTCTTAAAATATGATTCGAGAGAAAACGATAAGATCTAATG
* * * *
52580 ATTTCTAGTCGAGAATAAATCACCTCTCATGTCTTAAAGCAGTAATTTATTACT-CTACTC
66 ATTTCCAATCGAGAATAAATCACCTCTCATGCCTTAAAGCAGTAATTTATTACTCCAAC-C
*
52640 GAAATGAAGAGATATTATTATTTCGTCTTAAAAATAAT-ATTAACTAGAGAGAAAACGATAATAT
1 GAAATGAAGAGATATTATTATTTCGTCTT-AAAAT-ATGATT--C--GAGAGAAAACGATAAGAT
* * * * *
52704 CTAATTATTTCCAATCGAGAGTAAATGACCTCTCATGCCTTAAATCAGTCATTTATTACTCCAAC
60 CTAATGATTTCCAATCGAGAATAAATCACCTCTCATGCCTTAAAGCAGTAATTTATTACTCCAAC
52769 C
125 C
* *
52770 GAAATGATGAGATATTAATATTT
1 GAAATGAAGAGATATTATTATTT
52793 TCAAAATCGA
Statistics
Matches: 131, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
125 28 0.21
126 8 0.06
127 1 0.01
128 1 0.01
130 90 0.69
131 3 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (125 bp):
GAAATGAAGAGATATTATTATTTCGTCTTAAAATATGATTCGAGAGAAAACGATAAGATCTAATG
ATTTCCAATCGAGAATAAATCACCTCTCATGCCTTAAAGCAGTAATTTATTACTCCAACC
Found at i:54960 original size:3 final size:3
Alignment explanation
Indices: 54947--55007 Score: 95
Period size: 3 Copynumber: 19.7 Consensus size: 3
54937 GTAATGCCTG
*
54947 ATA AAA ATA ATA ATA ATA ATA ATA ATTA ATA ATA ATTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA A-TA ATA ATA ATA
54994 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
55008 GGGATGAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
3 48 0.89
4 6 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:55515 original size:134 final size:133
Alignment explanation
Indices: 55270--55773 Score: 458
Period size: 134 Copynumber: 3.8 Consensus size: 133
55260 CACTGTTATT
* * ** *
55270 AAATATGGAAAAAGAGGGATCTATTCCACTGCTTCTTAAGGGAAAATCATATCTATGAACGTTGA
1 AAATATGGAAAAAGAGGGATCTGTTCCACTGCTTCTTAAGGGAAAATAATATCTGGGGACGTTGA
* * * * *
55335 TTCATTCCACTATTATTCAGGGAAGATTGAATCGATG-TAGACTTGTTCCACTGTTCCTCACGGA
66 TTCATTCAACTGTTCTT-AGGAAAGATTGAATCGA-GATAGACTTGTTCCACTGTTCCTCAGGGA
55399 AGATC
129 AGATC
* * * * *
55404 AAATTTGGAAAAAGTGGCATCTGTTCCACTGCTTCTTGAGGAAAAATAATATCTGGGGACGATT-
1 AAATATGGAAAAAGAGGGATCTGTTCCACTGCTTCTTAAGGGAAAATAATATCTGGGGACG-TTG
* * *
55468 ACTCATTCAACTGTTCTTAAGAAAAGATTGAATCGAGATAGACTTGTTCCATTGTTCCTCAGGGG
65 ATTCATTCAACTGTTCTT-AGGAAAGATTGAATCGAGATAGACTTGTTCCACTGTTCCTCA-GGG
55533 AAGATC
128 AAGATC
* * * * * * *
55539 AAATATGGATAAAGAGGGATTTGTTCCGCTACTTTTTAAGGGAAAATTATATCAGGGGACGTTGA
1 AAATATGGAAAAAGAGGGATCTGTTCCACTGCTTCTTAAGGGAAAATAATATCTGGGGACGTTGA
** * * * * * *
55604 TTCATTGTATTGTTCTGTAGGAATGATTGAATCAAAGA-AGACTTGTTCCACTATTACTTAGGGA
66 TTCATTCAACTGTTCT-TAGGAAAGATTGAATC-GAGATAGACTTGTTCCACTGTTCCTCAGGGA
55668 AGAT-
129 AGATC
* * * * * * * * * * ** *
55672 ATAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGGGAAAATTAGATATGGAAATGTTG
1 A-AATATGGAAAAAGAGGGATCTGTTCCACTGCTTCTTAAGGGAAAATAATATCTGGGGACGTTG
** *
55737 ATTCATTCAACTGTTCTTCAGGGGAGATTAAATCGAG
65 ATTCATTCAACTGTTCTT-AGGAAAGATTGAATCGAG
55774 TTCGAAGCGC
Statistics
Matches: 297, Mismatches: 65, Indels: 17
0.78 0.17 0.04
Matches are distributed among these distances:
133 5 0.02
134 185 0.62
135 103 0.35
136 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (133 bp):
AAATATGGAAAAAGAGGGATCTGTTCCACTGCTTCTTAAGGGAAAATAATATCTGGGGACGTTGA
TTCATTCAACTGTTCTTAGGAAAGATTGAATCGAGATAGACTTGTTCCACTGTTCCTCAGGGAAG
ATC
Found at i:55749 original size:269 final size:267
Alignment explanation
Indices: 55270--55754 Score: 568
Period size: 269 Copynumber: 1.8 Consensus size: 267
55260 CACTGTTATT
* *
55270 AAATATGGAAAAAGAGGGATCTATTCCACTGCTTCTTAAGGGAAAATCATATCTATGAACGTTGA
1 AAATATGGAAAAAGAGGGATCTATTCCACTACTTCTTAAGGGAAAATCATATCTAGGAACGTTGA
* * * * *
55335 TTCATTCCACTATTATTCAGGGAAGATTGAATCGATGTAGACTTGTTCCACTGTTCCTCACGGAA
66 TTCATT-C-CTATTATTCAGGGAAGATTGAATCAAAGAAGACTTGTTCCACTATTACTCACGGAA
* * **
55400 GATCAAATTTGGAAAAAGTGGCATCTGTTCCACTGCTTCTTGAGGAAAAATAATATCTGGGGACG
129 GATCAAATTTGGAAAAAGTGGCATCTGTTCCACTGCTTCTTGAGGAAAAATAAGATATGGAAACG
55465 ATTACTCATTCAACTGTTCTTAAGAAAAGATTGAATCGAGATAGACTTGTTCCATTGTTCCTCAG
194 ATTACTCATTCAACTGTTCTTAAGAAAAGATTGAATCGAGATAGACTTGTTCCATTGTTCCTCAG
55530 GGGAAGATC
259 GGGAAGATC
* * * * * * *
55539 AAATATGGATAAAGAGGGATTTGTTCCGCTACTTTTTAAGGGAAAATTATATC-AGGGGACGTTG
1 AAATATGGAAAAAGAGGGATCTATTCCACTACTTCTTAAGGGAAAATCATATCTA-GGAACGTTG
* * * * *
55603 ATTCATT-GTATTGTTCTGTAGGAATGATTGAATCAAAGAAGACTTGTTCCACTATTACTTAGGG
65 ATTCATTCCTATTATTCAG--GGAA-GATTGAATCAAAGAAGACTTGTTCCACTATTACTCACGG
* * * * *
55667 AAGAT-ATAATCTT-GAAAGAGATGG-ATCTGTTCCGCTTCTTCTTGAGGGAAAATTAGATATGG
127 AAGATCA-AAT-TTGGAAAAAG-TGGCATCTGTTCCACTGCTTCTTGAGGAAAAATAAGATATGG
* *
55729 AAATG-TTGATTCATTCAACTGTTCTT
189 AAACGATT-ACTCATTCAACTGTTCTT
55755 CAGGGGAGAT
Statistics
Matches: 178, Mismatches: 30, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
266 8 0.04
268 8 0.04
269 157 0.88
270 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (267 bp):
AAATATGGAAAAAGAGGGATCTATTCCACTACTTCTTAAGGGAAAATCATATCTAGGAACGTTGA
TTCATTCCTATTATTCAGGGAAGATTGAATCAAAGAAGACTTGTTCCACTATTACTCACGGAAGA
TCAAATTTGGAAAAAGTGGCATCTGTTCCACTGCTTCTTGAGGAAAAATAAGATATGGAAACGAT
TACTCATTCAACTGTTCTTAAGAAAAGATTGAATCGAGATAGACTTGTTCCATTGTTCCTCAGGG
GAAGATC
Found at i:56178 original size:41 final size:42
Alignment explanation
Indices: 56112--56210 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 42
56102 CATGTGAAAA
* * * * * *
56112 CATCTTGCCCGAAGGTCTTATGGATGGCCCAAAGGACTTA-T
1 CATCTTGCTCGAAAGACTTACGGATGACCCAAAGGACTTAGG
* *
56153 CATCTTGCTCGAAAGACTTACGGATGACCCGAAGGATTTAGG
1 CATCTTGCTCGAAAGACTTACGGATGACCCAAAGGACTTAGG
*
56195 CATCATGCTCGAAAGA
1 CATCTTGCTCGAAAGA
56211 TAGAAACATC
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
41 33 0.69
42 15 0.31
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (42 bp):
CATCTTGCTCGAAAGACTTACGGATGACCCAAAGGACTTAGG
Found at i:57716 original size:22 final size:23
Alignment explanation
Indices: 57673--57716 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
57663 TTTCATCTCA
*
57673 ATTACATCTAAAACCAATCCAAT
1 ATTACATCTAAAACCAAGCCAAT
* *
57696 ATTACA-CTCAAACTAAGCCAA
1 ATTACATCTAAAACCAAGCCAA
57717 ACTATCATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (23 bp):
ATTACATCTAAAACCAAGCCAAT
Done.