genome.fa.s1596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001596.1 Hibiscus syriacus cultivar Beakdansim tig00003178_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93557

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151--195	18	2.6	18	89	3	65	20	0	33	46	1.51
2090--2129	20	2.0	20	100	0	80	35	20	25	20	1.96
4321--4457	59	2.3	59	87	5	197	37	16	10	35	1.84
6277--6311	16	2.3	15	95	5	61	48	20	17	14	1.81
6825--6865	17	2.4	18	80	12	50	78	0	2	19	0.87
7542--7585	20	2.3	18	81	14	52	47	18	0	34	1.49
7543--7584	19	2.1	21	86	8	61	50	16	0	33	1.46
7554--7676	64	1.9	64	83	9	162	52	15	2	29	1.55
7595--7743	74	2.0	72	82	6	174	59	12	1	27	1.41
9357--9388	14	2.2	15	94	5	57	78	0	3	18	0.89
9329--9395	5	13.0	5	77	12	64	70	2	5	20	1.22
14861--14904	19	2.4	18	88	3	61	75	0	4	20	0.98
19781--20013	124	1.9	124	91	1	387	20	18	21	39	1.93
21618--21660	17	2.5	17	100	0	86	11	27	23	37	1.89
29480--29588	57	1.9	58	92	1	184	35	12	36	14	1.85
34594--34639	12	3.8	12	82	5	56	56	0	0	43	0.99
34774--35619	233	3.6	230	85	4	1090	35	17	16	31	1.92
39866--39907	22	1.9	22	90	9	68	14	11	4	69	1.34
40227--40275	25	2.0	24	88	4	71	83	12	4	0	0.77
40247--40275	11	2.6	11	100	0	58	86	13	0	0	0.58
44579--44620	22	1.9	22	90	9	68	14	11	4	69	1.34
48298--49611	234	5.7	229	83	4	1545	34	16	16	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49035--49126	42	2.2	41	88	1	130	33	22	19	23	1.97
49063--49130	20	3.3	20	67	15	57	33	22	22	22	1.97
55589--55613	9	2.8	9	100	0	50	56	0	0	44	0.99
55728--58464	233	11.9	233	84	4	3491	34	16	16	32	1.92
56020--56414	212	1.9	213	89	1	623	35	14	16	32	1.89
56652--56768	42	2.9	41	72	6	103	29	19	25	25	1.99
58029--58136	41	2.6	42	82	2	119	30	20	21	27	1.98
84747--84771	13	1.9	13	100	0	50	40	16	16	28	1.89
85467--85690	120	1.9	120	88	0	340	35	23	17	23	1.95
87832--87906	31	2.4	31	81	2	96	28	26	24	21	1.99
92590--92660	20	3.5	20	92	0	124	16	26	25	30	1.97
92649--92673	13	1.9	13	100	0	50	16	16	32	36	1.90

Tables:   1

The End!