Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001598.1 Hibiscus syriacus cultivar Beakdansim tig00003181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62102

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11249--11315
20
3.1
21
72
23
59
49
1
1
47
1.19
12141--12510
35
10.5
35
88
0
425
34
10
25
29
1.90
12142--12510
105
3.5
105
86
1
477
34
10
25
29
1.90
12762--12886
59
2.1
60
89
1
189
40
20
4
34
1.71
12779--12888
29
3.8
29
67
7
78
40
18
3
37
1.68
15933--15965
8
4.0
8
96
4
57
24
0
0
75
0.80
21249--21372
23
5.3
23
80
6
117
18
20
23
37
1.94
21249--21351
47
2.2
47
80
1
118
17
20
24
37
1.93
21342--21393
24
2.2
23
86
3
68
19
23
23
34
1.96
21319--21400
23
3.5
24
82
9
82
17
23
25
34
1.96
25185--25423
38
6.4
36
75
13
200
45
5
8
41
1.57
25172--25424
37
6.8
36
75
16
180
44
4
9
41
1.57
25521--25605
5
17.4
5
70
24
58
35
3
1
60
1.22
25500--25602
51
2.0
51
81
10
122
35
2
1
59
1.24
25543--25604
22
2.9
20
74
25
56
33
1
1
62
1.14
25517--25620
54
2.0
51
83
9
129
33
2
0
62
1.16
25521--25613
19
4.8
19
67
20
50
34
3
1
61
1.19
25689--25762
32
2.3
32
95
0
130
22
32
31
13
1.93
27383--27462
39
2.1
39
83
4
99
48
3
3
43
1.38
28662--28706
23
2.0
23
86
0
63
26
28
24
20
1.99
28685--28988
149
2.0
149
96
0
563
34
20
17
27
1.95
30593--30633
21
2.0
21
85
0
55
19
21
29
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33636--33680
23
2.0
23
86
0
63
26
28
24
20
1.99
33659--33962
149
2.0
149
98
0
581
34
20
17
27
1.95
34959--34993
18
1.9
18
88
11
54
22
17
5
54
1.64
35571--35615
21
2.1
21
87
0
63
15
24
28
31
1.96
42677--42735
30
2.0
30
89
0
91
40
22
16
20
1.91
44046--44080
16
2.1
18
89
10
56
11
25
11
51
1.71
46720--47361
160
4.0
160
89
2
877
41
11
15
31
1.83
49530--49558
14
2.1
14
100
0
58
48
0
24
27
1.51
49804--49867
24
2.6
24
71
9
67
45
1
3
50
1.27
55257--55290
18
1.9
18
88
5
52
17
26
29
26
1.98
55508--55551
20
2.3
19
84
4
52
29
0
4
65
1.12
56670--56714
22
2.2
20
82
17
58
37
11
2
48
1.51
56813--56845
2
16.5
2
100
0
66
48
0
0
51
1.00
57412--57442
16
1.9
16
100
0
62
58
19
12
9
1.62
58546--58589
14
3.1
14
100
0
88
47
29
15
6
1.72
59042--59099
2
30.0
2
87
6
75
48
0
1
50
1.11
59948--59984
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1

The End!