Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000016.1 Hibiscus syriacus cultivar Beakdansim tig00000031_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84441

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4944--4970
13
2.1
13
100
0
54
37
14
11
37
1.82
11436--11477
21
2.0
21
85
0
57
28
19
21
30
1.97
22579--22625
17
2.7
18
90
6
78
10
21
51
17
1.75
23725--23762
15
2.5
15
95
0
67
26
21
23
28
1.99
28473--28611
42
3.4
41
71
14
124
27
15
21
35
1.94
28552--28874
82
3.9
81
79
3
324
33
16
18
32
1.93
28624--28745
41
3.0
41
68
13
106
34
18
17
30
1.93
28552--28868
164
1.9
165
81
3
379
33
16
18
32
1.93
29340--29414
22
3.4
22
96
0
132
44
6
17
32
1.75
34269--34334
21
3.1
21
72
12
64
50
18
28
3
1.62
34279--34340
21
3.0
21
78
4
72
50
20
24
4
1.68
34662--34819
44
3.6
43
76
5
158
29
24
17
29
1.97
34964--35143
43
4.2
42
75
4
148
26
23
21
28
1.99
37921--38085
65
2.5
65
82
3
190
30
24
16
28
1.97
43847--43944
44
2.2
44
82
10
112
30
23
18
27
1.98
46200--46233
16
2.1
16
100
0
68
35
0
47
17
1.48
53716--53768
26
2.0
26
96
0
97
3
26
20
49
1.66
55151--55210
30
2.0
30
84
12
79
28
8
3
60
1.42
60235--60278
21
2.1
21
100
0
88
54
13
15
15
1.71
72220--72281
26
2.3
26
97
2
115
27
22
38
11
1.88
77876--77919
23
1.9
23
81
9
54
15
4
2
77
1.04

Tables:   1

The End!