genome.fa.s160.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000160.1 Hibiscus syriacus cultivar Beakdansim tig00000282_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192322

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1385--1423	20	1.9	21	89	5	62	51	7	12	28	1.67
2192--2270	37	2.1	37	95	0	140	41	11	16	30	1.83
2984--3133	61	2.5	61	82	4	178	28	23	14	34	1.93
2942--3133	20	9.4	20	70	12	88	29	22	12	34	1.91
3918--3951	12	2.8	12	90	0	50	55	29	0	14	1.40
6355--6401	12	3.9	12	82	0	58	53	25	4	17	1.62
6354--6388	6	5.8	6	86	0	52	60	20	2	17	1.49
6686--6795	20	5.8	20	68	12	79	44	20	12	21	1.85
7876--7932	12	4.9	12	74	8	55	38	24	15	21	1.92
7878--7949	22	3.1	23	82	7	74	38	26	13	20	1.90
9163--9229	3	21.3	3	79	14	73	61	0	34	4	1.16
9182--9229	23	2.0	23	92	4	78	64	0	33	2	1.05
18984--19188	21	9.8	21	80	6	218	33	34	11	20	1.88
19002--19186	63	2.9	62	91	1	280	34	34	10	21	1.87
19287--19495	42	5.0	41	85	8	271	23	15	37	23	1.93
19287--19495	81	2.5	84	89	2	316	23	15	37	23	1.93
19664--19694	2	15.5	2	100	0	62	48	0	0	51	1.00
19694--19722	2	14.5	2	100	0	58	0	0	48	51	1.00
20995--21064	14	5.1	14	72	6	54	44	22	12	20	1.85
20987--21064	20	3.8	20	77	1	75	44	21	14	19	1.85
21047--21104	20	2.8	21	92	5	100	50	20	13	15	1.78
21105--21168	20	3.2	20	81	0	92	15	14	18	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21753--21841	20	4.4	20	72	2	72	38	11	22	28	1.88
21865--21924	20	3.1	19	75	15	68	26	18	18	36	1.94
21866--21942	40	1.9	40	84	10	104	29	15	19	35	1.93
34302--34358	18	3.2	18	84	0	87	40	7	10	42	1.66
34299--34352	9	6.0	9	80	0	63	38	5	11	44	1.63
35873--35907	9	3.9	9	88	0	52	45	17	8	28	1.77
37041--37068	14	2.0	14	100	0	56	21	14	14	50	1.78
39990--40019	13	2.3	13	94	0	51	26	23	13	36	1.92
40176--40251	2	38.5	2	97	2	145	48	0	0	51	1.00
46312--46366	28	2.0	28	96	0	101	32	21	12	32	1.91
46443--46501	2	29.5	2	100	0	118	50	0	0	49	1.00
50733--50850	32	3.7	32	77	4	130	33	15	22	28	1.94
51989--52037	21	2.3	21	89	0	80	55	0	6	38	1.25
51989--52034	12	3.8	12	79	0	56	54	0	6	39	1.26
51989--52037	15	3.3	15	85	0	53	55	0	6	38	1.25
56064--56146	16	5.3	15	71	15	53	56	1	3	38	1.24
59413--59460	2	24.0	2	100	0	96	50	0	0	50	1.00
59874--59900	3	9.0	3	100	0	54	33	0	0	66	0.92
61499--61544	24	1.9	24	100	0	92	36	0	0	63	0.95
62498--62527	15	2.0	15	93	0	51	56	0	3	40	1.16
62983--63013	2	15.5	2	100	0	62	48	0	0	51	1.00
63427--63562	7	19.4	7	73	3	67	43	30	2	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63425--63562	14	9.9	14	66	6	75	44	29	2	23	1.65
63427--63562	42	3.2	41	79	4	146	43	30	2	24	1.66
63425--63560	35	3.9	34	72	8	94	44	29	2	23	1.65
65418--65494	11	6.8	11	79	5	82	33	16	19	29	1.94
65418--65496	23	3.5	23	85	1	106	34	16	20	29	1.94
65418--65494	34	2.3	34	86	4	111	33	16	19	29	1.94
65418--65515	23	4.3	22	81	6	79	30	16	22	30	1.96
65527--65557	16	1.9	16	93	0	53	12	12	25	48	1.77
66010--66038	12	2.3	13	94	5	51	68	0	0	31	0.89
66158--66198	15	2.5	17	84	15	68	78	0	0	21	0.76
66164--66198	15	2.3	15	100	0	70	77	0	0	22	0.78
66241--66284	18	2.5	17	85	10	61	77	2	0	20	0.88
67626--67660	3	11.3	3	87	6	52	65	0	2	31	1.07
67610--67683	9	8.1	10	78	11	54	63	2	1	32	1.17
67740--67918	38	5.0	34	82	15	111	44	2	3	49	1.33
67732--68045	37	8.5	37	81	12	324	44	4	3	46	1.41
68080--68113	14	2.4	14	90	0	50	44	5	5	44	1.52
68673--69533	84	10.4	80	77	6	729	24	19	24	31	1.98
68724--69491	165	4.7	162	82	4	724	23	19	25	31	1.98
70348--70571	95	2.5	85	77	15	238	33	17	17	31	1.94
70396--70595	95	2.1	96	84	3	269	33	15	16	35	1.90
74039--74072	14	2.4	14	100	0	68	79	0	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74161--74207	17	2.8	17	83	3	60	74	0	8	17	1.05
75520--75571	16	3.2	16	81	10	70	69	0	1	28	0.99
75520--75571	13	4.1	13	85	9	72	69	0	1	28	0.99
75520--75571	3	16.3	3	80	11	59	69	0	1	28	0.99
75519--75569	10	5.2	10	81	11	61	70	0	1	27	0.98
75647--75951	37	8.2	37	72	19	135	44	4	3	47	1.41
75648--75871	116	1.9	113	82	9	274	45	4	3	47	1.37
75755--75946	74	2.6	71	80	8	183	44	5	3	46	1.43
75950--76061	38	2.9	38	74	15	113	46	6	0	46	1.34
75950--76060	37	3.0	37	79	11	120	45	6	0	46	1.34
81033--81235	106	1.9	106	85	2	282	36	6	21	35	1.79
81292--81330	20	2.0	20	94	0	69	56	7	7	28	1.55
92311--92415	53	2.0	53	90	0	165	29	20	13	36	1.91
98781--98819	19	2.1	19	95	0	69	20	38	15	25	1.92
98718--98926	65	3.2	64	82	8	203	30	26	16	26	1.97
98767--98929	65	2.5	65	84	3	213	30	26	15	26	1.96
100276--100489	117	1.8	118	82	7	274	50	7	15	25	1.71
101026--101065	20	2.0	21	85	14	57	37	15	5	42	1.68
101025--101069	20	2.2	20	80	11	56	40	13	4	42	1.64
105971--106014	21	2.1	21	86	0	61	9	36	15	38	1.80
107010--107048	19	2.1	19	95	0	69	20	38	15	25	1.92
106947--107155	65	3.2	64	82	11	198	30	26	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106996--107158	65	2.5	63	83	6	204	31	26	14	26	1.95
107919--107943	7	3.6	7	100	0	50	56	32	12	0	1.36
111894--111923	3	10.0	3	100	0	60	0	33	0	66	0.92
112875--112906	13	2.4	14	85	15	50	65	0	3	31	1.08
114142--114178	9	4.1	9	93	6	58	75	0	8	16	1.02
114176--114221	15	2.6	18	80	19	53	60	0	2	36	1.09
114166--114235	22	3.0	21	78	21	68	64	1	1	32	1.11
114306--114457	36	4.2	36	74	12	143	43	7	3	45	1.50
114222--114391	86	2.0	88	85	4	238	42	8	3	45	1.51
114306--114457	71	2.1	72	79	6	166	43	7	3	45	1.50
121989--122051	33	1.9	32	87	9	92	46	6	0	47	1.28
122698--122744	23	2.0	23	83	4	58	59	0	38	2	1.09
124333--124373	22	1.9	21	90	5	64	70	4	0	24	1.06
129646--129684	20	2.0	20	100	0	78	20	35	12	30	1.90
134523--134581	23	2.6	23	86	0	82	44	22	10	23	1.83
143460--143495	18	2.0	18	100	0	72	27	5	33	33	1.80
156572--156605	10	3.4	10	83	0	50	20	8	0	70	1.13
166026--166062	12	2.9	13	92	8	67	86	8	5	0	0.70
166024--166069	13	3.7	12	85	8	65	86	8	4	0	0.68
166897--167567	105	6.4	105	95	0	1137	33	25	18	22	1.97
169319--169376	18	3.1	20	76	16	70	24	5	0	70	1.07
169511--169551	13	2.8	15	78	14	50	14	4	0	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178188--178230	12	3.6	12	87	0	59	11	16	48	23	1.78
178228--178328	2	53.5	2	74	11	79	48	0	0	51	1.00
178355--178391	13	2.8	13	95	0	65	13	16	54	16	1.72
178436--178460	6	4.2	6	100	0	50	0	64	16	20	1.30
185411--185505	44	2.2	44	98	0	181	27	21	8	43	1.81

Tables:   1

The End!