genome.fa.s1600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001600.1 Hibiscus syriacus cultivar Beakdansim tig00003183_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61876

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1453--1502	19	2.6	19	100	0	100	26	6	28	40	1.79
2074--2143	15	4.7	15	67	1	52	15	10	32	41	1.81
2074--2143	30	2.4	29	90	7	106	15	10	32	41	1.81
5662--5718	22	2.7	21	86	5	87	61	14	3	21	1.47
6807--6868	2	31.0	2	96	0	115	48	0	1	50	1.10
7186--7488	43	7.1	43	81	4	204	24	16	6	52	1.67
7291--7505	44	5.0	43	84	5	240	26	20	6	46	1.76
7184--7509	85	3.8	83	76	9	255	25	17	6	51	1.68
7291--7505	43	5.0	43	83	6	256	26	20	6	46	1.76
9612--9700	14	6.3	14	69	7	54	62	3	11	22	1.42
10304--10438	63	2.1	63	93	0	225	33	19	21	25	1.97
10648--10691	22	2.0	22	90	0	70	45	18	15	20	1.85
10720--10764	21	2.1	21	100	0	90	31	33	22	13	1.92
11464--11539	31	2.5	31	80	4	82	36	18	17	27	1.93
12568--12649	21	3.9	21	71	15	78	24	35	17	23	1.95
12674--12704	12	2.6	12	89	0	53	16	25	19	38	1.92
16065--16182	21	5.4	21	91	5	141	20	38	16	25	1.92
16065--16226	46	3.7	43	83	8	177	20	35	17	26	1.94
16080--16206	23	5.7	23	90	3	165	21	36	17	25	1.94
16246--16298	20	2.7	20	87	0	70	22	28	18	30	1.98
16410--16449	20	1.9	22	90	10	66	37	40	10	12	1.77
16671--16733	34	1.9	34	87	6	94	28	17	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19390--19633	102	2.4	102	82	4	280	40	11	13	34	1.82
22579--22658	41	2.0	41	84	0	106	28	23	23	23	1.99
26517--26658	55	2.6	55	80	6	162	38	16	14	30	1.88
26537--26671	55	2.5	55	85	2	164	37	13	14	34	1.85
32216--32359	55	2.6	55	82	5	173	37	18	16	27	1.92
32216--32394	56	3.3	54	82	3	198	34	17	17	30	1.93
35878--35919	17	2.3	18	88	8	59	40	7	19	33	1.78
39093--39282	95	2.0	95	86	0	263	33	17	24	24	1.96
39102--39316	95	2.3	95	84	1	261	34	16	24	24	1.95
39541--39747	59	3.5	59	86	5	301	34	9	17	38	1.83
40104--40376	68	4.0	68	86	0	375	30	16	24	29	1.96
40392--40665	43	6.2	44	86	5	326	47	5	21	25	1.72
40415--40486	22	3.2	22	66	11	56	50	6	22	20	1.72
40506--40575	21	3.3	21	74	18	81	48	5	21	24	1.71
40505--40617	22	5.2	21	70	11	86	48	6	21	23	1.72
42025--42073	19	2.7	17	84	9	53	26	20	28	24	1.99
42044--42204	65	2.5	65	79	5	175	29	18	21	30	1.97
44349--44387	13	3.1	13	88	3	53	48	2	7	41	1.45
50718--50797	19	4.4	17	74	12	61	27	21	25	26	1.99
50754--50920	65	2.6	64	77	10	171	25	17	24	31	1.97
52165--52200	18	2.0	18	100	0	72	33	0	33	33	1.58
53511--53671	59	2.7	60	92	3	274	34	9	18	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54027--54869	68	12.4	68	90	0	1265	30	14	24	30	1.95
56058--56084	13	2.1	13	100	0	54	22	29	7	40	1.81
57418--57455	16	2.4	16	100	0	76	31	13	10	44	1.77
57936--57979	19	2.3	19	96	0	79	38	2	20	38	1.65
59059--59113	24	2.3	24	96	0	101	20	12	20	47	1.82

Tables:   1

The End!