genome.fa.s1601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001601.1 Hibiscus syriacus cultivar Beakdansim tig00003184_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115975

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5813--5857	2	22.5	2	100	0	90	48	0	0	51	1.00
6600--7043	228	2.0	223	91	4	730	45	7	7	40	1.60
7107--7153	21	2.3	20	89	7	76	55	10	17	17	1.69
7275--7321	20	2.3	20	96	0	85	57	8	17	17	1.63
7279--7326	20	2.6	18	87	12	62	58	8	14	18	1.61
9544--9608	21	3.1	21	80	6	69	40	15	29	15	1.88
9642--9708	34	2.0	34	88	2	100	28	0	47	23	1.52
11489--11537	19	2.6	19	93	0	80	30	2	10	57	1.43
11654--13017	197	6.9	199	97	1	2602	36	16	15	30	1.91
11654--13017	395	3.4	397	98	1	2614	36	16	15	30	1.91
14483--14557	3	25.0	3	79	0	78	34	5	34	25	1.79
15750--16260	183	2.8	183	95	1	893	36	13	16	33	1.88
16256--16296	21	1.9	22	85	5	57	31	12	12	43	1.79
19414--19477	23	2.8	23	87	0	92	35	6	20	37	1.78
19414--19486	23	3.2	23	82	7	85	34	5	20	39	1.76
19842--19905	23	2.8	23	87	0	92	35	6	20	37	1.78
19842--19914	23	3.2	23	82	7	85	34	5	20	39	1.76
19316--20182	428	2.0	429	97	1	1652	39	8	13	38	1.74
22136--22184	16	3.1	16	87	0	71	57	22	10	10	1.62
26453--26498	20	2.3	20	88	0	65	43	4	6	45	1.49
26453--26501	4	12.2	4	86	0	53	42	4	6	46	1.47
26453--26501	6	8.2	6	76	0	53	42	4	6	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30349--30422	23	3.3	21	79	7	67	31	24	25	18	1.98
30367--30422	23	2.4	23	87	0	85	30	25	26	17	1.97
30367--30435	23	3.0	23	84	0	75	31	23	27	17	1.97
31272--31341	35	2.0	35	89	10	108	27	22	17	32	1.96
33083--33162	35	2.3	34	77	12	81	36	2	6	55	1.39
34551--34588	20	1.9	20	88	0	58	39	36	13	10	1.79
36295--36331	19	1.9	19	88	0	56	40	8	16	35	1.78
41331--41381	20	2.5	20	96	0	93	39	15	13	31	1.87
42769--42806	20	2.0	20	84	5	51	31	7	2	57	1.41
44621--44660	20	2.0	21	95	5	73	25	20	22	32	1.98
55173--55230	31	1.9	31	83	16	77	51	1	0	46	1.11
58240--58277	11	3.5	11	85	7	60	21	13	10	55	1.67
58248--58285	10	3.7	10	86	6	58	18	15	7	57	1.62
58231--58285	21	2.6	21	94	0	92	21	16	9	52	1.71
62273--62517	85	2.9	85	84	0	321	26	19	19	34	1.96
62646--62947	156	1.9	156	95	0	541	27	14	22	35	1.93
63610--63856	96	2.6	95	82	2	296	32	16	17	33	1.92
78408--78457	24	2.1	24	85	7	66	22	2	16	60	1.46
82872--82918	2	23.5	2	91	0	76	51	4	0	44	1.21
92195--92243	19	2.5	19	90	3	71	30	32	16	20	1.94
92281--92319	21	1.9	20	84	5	51	25	15	17	41	1.89
92317--92363	20	2.3	20	92	0	76	38	23	19	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92372--92463	20	4.6	20	71	6	62	36	22	13	27	1.91
92434--92500	20	3.3	20	83	10	73	28	23	14	32	1.95
92509--92543	18	1.9	18	88	0	52	28	17	11	42	1.83
92681--92720	16	2.5	16	83	0	53	27	5	0	67	1.11
93473--93526	24	2.2	24	90	0	81	20	16	20	42	1.89
95265--95396	63	2.1	63	88	0	192	31	21	20	26	1.98
95830--95866	18	2.1	18	89	0	56	32	5	10	51	1.60
95822--95874	24	2.2	24	86	0	70	35	3	13	47	1.61
97039--97074	18	2.0	18	94	0	63	55	25	2	16	1.55
97246--97301	29	1.9	29	100	0	112	26	14	25	33	1.94
97306--97330	13	1.9	13	100	0	50	40	16	24	20	1.91
97324--97383	20	3.0	20	85	0	75	23	23	23	30	1.99
97332--97396	20	3.2	20	84	0	76	20	20	26	33	1.96
97506--97539	14	2.4	14	100	0	68	47	20	0	32	1.51
98901--98986	21	4.1	21	78	11	95	30	18	30	20	1.97
99250--99371	63	1.9	62	81	6	147	31	33	11	22	1.90
101443--101489	22	2.1	22	96	0	85	21	12	42	23	1.87
101453--101500	22	2.2	22	92	0	78	20	14	47	16	1.82
101644--101692	20	2.5	20	96	0	89	16	16	24	42	1.87
101685--101759	20	3.8	20	96	0	114	21	18	26	33	1.96

Tables:   1

The End!