Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001602.1 Hibiscus syriacus cultivar Beakdansim tig00003186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63030
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:3441 original size:19 final size:19
Alignment explanation
Indices: 3417--3485 Score: 84
Period size: 19 Copynumber: 3.4 Consensus size: 19
3407 TATGTCACAT
3417 ATGAACAATTTGATTTTAC
1 ATGAACAATTTGATTTTAC
* *
3436 ATGAACAAATGTGTATTTATAT
1 ATGAAC-AATTTG-ATTT-TAC
3458 ATAGAACAATTTGATTTTAC
1 AT-GAACAATTTGATTTTAC
3478 ATGAACAA
1 ATGAACAA
3486 ATGTGTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
19 12 0.29
20 9 0.21
21 8 0.19
22 9 0.21
23 4 0.10
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.38
Consensus pattern (19 bp):
ATGAACAATTTGATTTTAC
Found at i:3478 original size:42 final size:41
Alignment explanation
Indices: 3415--3503 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 41
3405 AATATGTCAC
*
3415 ATATGAACAATTTGATTTTACATGAACAAATGTGTATTTAT
1 ATATGAACAATTTGATTTTACATGAACAAATGTGTATTAAT
3456 ATATAGAACAATTTGATTTTACATGAACAAATGTGTATTAAT
1 ATAT-GAACAATTTGATTTTACATGAACAAATGTGTATTAAT
3498 ATATGA
1 ATATGA
3504 GTAATTTTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
41 6 0.13
42 40 0.87
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (41 bp):
ATATGAACAATTTGATTTTACATGAACAAATGTGTATTAAT
Found at i:4352 original size:30 final size:30
Alignment explanation
Indices: 4287--4352 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
4277 TCGGAGATAG
* *
4287 ACTAGCAAGGTGGAAAATGAGAACTCTTTG
1 ACTAGCAAGGTGGAAAACGAGAACTCTTTC
* *
4317 ACTAGCAAGGTGGAAAACGAGGACTTTTTC
1 ACTAGCAAGGTGGAAAACGAGAACTCTTTC
*
4347 TCTAGC
1 ACTAGC
4353 CGGAAGAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (30 bp):
ACTAGCAAGGTGGAAAACGAGAACTCTTTC
Found at i:21056 original size:23 final size:23
Alignment explanation
Indices: 20988--21048 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
20978 ACATTTTATA
20988 TGGCACTTCGGTGTAATTCTACG
1 TGGCACTTCGGTGTAATTCTACG
* *
21011 CGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGTAATTCTACG
*
21034 TGGCACTTAGGTGTA
1 TGGCACTTCGGTGTA
21049 TTTATACGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.18, C:0.23, G:0.28, T:0.31
Consensus pattern (23 bp):
TGGCACTTCGGTGTAATTCTACG
Found at i:26442 original size:23 final size:23
Alignment explanation
Indices: 26374--26434 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
26364 ACATTTTAAA
*
26374 TGGCACTTCGGTGTAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
26397 CGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
26420 TGGCACTTAGGTGCA
1 TGGCACTTCGGTGCA
26435 TTTATACGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.18, C:0.25, G:0.28, T:0.30
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:26493 original size:16 final size:17
Alignment explanation
Indices: 26472--26505 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26462 GTGCACAACC
26472 TCTATAG-ACTCACATA
1 TCTATAGTACTCACATA
*
26488 TCTATAGTTCTCACATA
1 TCTATAGTACTCACATA
26505 T
1 T
26506 GTACGTGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (17 bp):
TCTATAGTACTCACATA
Found at i:27962 original size:22 final size:23
Alignment explanation
Indices: 27935--27995 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
27925 TTAAGGAAAG
27935 AGAGTATCGATACTAC-ATCAAA
1 AGAGTATCGATACTACTATCAAA
* * * *
27957 AGAGTATCGGTACTACTGTTATA
1 AGAGTATCGATACTACTATCAAA
27980 AGTAGTATCGATACTA
1 AG-AGTATCGATACTA
27996 GATAAATATC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 15 0.47
23 5 0.16
24 12 0.38
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (23 bp):
AGAGTATCGATACTACTATCAAA
Found at i:43370 original size:22 final size:23
Alignment explanation
Indices: 43344--43397 Score: 85
Period size: 22 Copynumber: 2.4 Consensus size: 23
43334 TAATTATGTA
43344 TTTATGGCACA-TTTCCTCTATT
1 TTTATGGCACATTTTCCTCTATT
*
43366 TTTATGGCGCATTTTCCTCTATT
1 TTTATGGCACATTTTCCTCTATT
43389 TTT-TGGCAC
1 TTTATGGCAC
43398 GTTCATTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 15 0.52
23 14 0.48
ACGTcount: A:0.15, C:0.22, G:0.13, T:0.50
Consensus pattern (23 bp):
TTTATGGCACATTTTCCTCTATT
Found at i:44069 original size:12 final size:13
Alignment explanation
Indices: 44043--44068 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44033 ACATAAAAAT
44043 ATATCTTTTTAAA
1 ATATCTTTTTAAA
44056 ATATCTTTTTAAA
1 ATATCTTTTTAAA
44069 TTTTATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATCTTTTTAAA
Found at i:50523 original size:21 final size:21
Alignment explanation
Indices: 50497--50537 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50487 TAAAACGTCT
50497 AATAATAATATTTTCGATAAA
1 AATAATAATATTTTCGATAAA
* *
50518 AATAATTATATTTTTGATAA
1 AATAATAATATTTTCGATAA
50538 TTTTTACCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (21 bp):
AATAATAATATTTTCGATAAA
Found at i:51481 original size:32 final size:32
Alignment explanation
Indices: 51447--51509 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 32
51437 AAATTAATAT
51447 TTTTGATAAAAAATAAT-AT-TTTTAAATAACA
1 TTTT-ATAAAAAATAATAATATTTTAAATAACA
* *
51478 TTTTATCAAAAATAATAATATTTTCAATAACA
1 TTTTATAAAAAATAATAATATTTTAAATAACA
51510 CTTTCCCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 11 0.39
31 6 0.21
32 11 0.39
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (32 bp):
TTTTATAAAAAATAATAATATTTTAAATAACA
Found at i:52580 original size:19 final size:20
Alignment explanation
Indices: 52541--52586 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
52531 CGATATACCA
52541 GGTAAAAATATGATAAAACC
1 GGTAAAAATATGATAAAACC
52561 GGTAACAAA-ATGAT-AAACC
1 GGTAA-AAATATGATAAAACC
52580 GGTAAAA
1 GGTAAAA
52587 TTAAAGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.08
19 10 0.40
20 10 0.40
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (20 bp):
GGTAAAAATATGATAAAACC
Found at i:55051 original size:33 final size:33
Alignment explanation
Indices: 55009--55074 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
54999 AAATAGATGG
*
55009 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
55042 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
55075 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:56872 original size:18 final size:18
Alignment explanation
Indices: 56849--56883 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
56839 TCGAGTTAAT
56849 TTTGTATAAGATTTATAA
1 TTTGTATAAGATTTATAA
*
56867 TTTGTATACGATTTATA
1 TTTGTATAAGATTTATA
56884 TTTTTTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGTATAAGATTTATAA
Found at i:57488 original size:197 final size:197
Alignment explanation
Indices: 56968--58166 Score: 2069
Period size: 197 Copynumber: 6.1 Consensus size: 197
56958 TTAAGGGTCA
* *
56968 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCACCA
57033 TAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAA-CC-AAAGTATAA-GTA
66 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
*
57094 ATATGTAATTTTTTAATCTAACCGGTAC-ATTATACCGGTTTTATGAGAGAATAAGTCTAAATAA
131 ATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATAA
57158 TG
196 TG
* *
57160 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCAGAATGAATTAAAAACAAGGTGCTCAA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCACCA
57224 TAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
66 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
57288 ATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA-AA
131 ATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATAA
57352 TG
196 TG
57354 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCAGAATGAATTAAAAACAAGGTGCAC
1 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTT-CCAGAATGAATTAAAAACAAGGTGCAC
57419 CATAAAGTGTCGATCCATATATAAAAAAGTG-CGATCCCAAAATCATCGAA-CCAAAAGTATAAT
64 CATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
57482 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
128 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
57547 TAATG
193 TAATG
57552 T-TCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAA-TAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCA-C
*
57615 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
64 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
57680 TAATATGTAATTTTT-AATCTAACCGGTACAATTATACCGGTTTTATAAGAGAATAAGTCTAAAT
129 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
57744 AATG
194 AATG
*
57748 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCAGAATGAATAAAAAACAAGGTTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGG-TGCA-C
57812 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
64 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
57877 TAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
129 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
57941 -ATG
194 AATG
57944 TGTCGACACTAATAT--TTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAATTAAAAACAAGGTGCACC
*
58007 ATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
65 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
* *
58072 AATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCTAAATA
130 AATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
58137 ATG
195 ATG
58140 TGTCGACACTAATAT--TTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
58167 CTAATTTAAA
Statistics
Matches: 968, Mismatches: 18, Indels: 38
0.95 0.02 0.04
Matches are distributed among these distances:
191 79 0.08
192 30 0.03
193 9 0.01
194 150 0.15
195 135 0.14
196 193 0.20
197 341 0.35
198 24 0.02
199 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (197 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCACCA
TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
ATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATAA
TG
Found at i:59601 original size:18 final size:18
Alignment explanation
Indices: 59578--59645 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
59568 ATCGGTCGCA
59578 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* *
59596 GAAGATGACGATGATGATGAT
1 GAAGATGA--A-GCTGACGAT
*
59617 GATGACGATGAAGCTGGCGAT
1 GA--A-GATGAAGCTGACGAT
59638 GAAGATGA
1 GAAGATGA
59646 TGACGATGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 13 0.33
19 1 0.03
20 1 0.03
21 17 0.44
22 1 0.03
23 1 0.03
24 5 0.13
ACGTcount: A:0.37, C:0.09, G:0.35, T:0.19
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:59602 original size:6 final size:6
Alignment explanation
Indices: 59578--59675 Score: 70
Period size: 6 Copynumber: 16.3 Consensus size: 6
59568 ATCGGTCGCA
* * * * * *
59578 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
59626 GAAGCT GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
59674 GA
1 GA
59676 TGATCCAAAC
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:59613 original size:3 final size:3
Alignment explanation
Indices: 59593--59679 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
59583 TGAAGCTGAC
* * * * * ** *
59593 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
59641 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
59680 CCAAACAAGT
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.36, C:0.06, G:0.34, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:59628 original size:42 final size:42
Alignment explanation
Indices: 59581--59671 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
59571 GGTCGCAGAA
*
59581 GATGAAGCTGACGATGAAGATGACGATGATGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
* * *
59623 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
59665 GATGAAG
1 GATGAAG
59672 ATGATGATCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.22
Consensus pattern (42 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
Found at i:59679 original size:18 final size:18
Alignment explanation
Indices: 59578--59675 Score: 88
Period size: 18 Copynumber: 5.4 Consensus size: 18
59568 ATCGGTCGCA
* *
59578 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGATGAT
*
59596 GAAGATGACGATGATGAT
1 GAAGATGAAGATGATGAT
* * * *
59614 GATGATGACGATGAAGCT
1 GAAGATGAAGATGATGAT
** *
59632 GGCGATGAAGATGATGAC
1 GAAGATGAAGATGATGAT
* *
59650 GATGATGATGATGATGAT
1 GAAGATGAAGATGATGAT
59668 GAAGATGA
1 GAAGATGA
59676 TGATCCAAAC
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGATGAT
Found at i:61566 original size:182 final size:184
Alignment explanation
Indices: 61035--61866 Score: 1433
Period size: 182 Copynumber: 4.7 Consensus size: 184
61025 CACTTTCAAT
**
61035 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTAT--GCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
61098 GGTCTACAACCTATATCGACAC-TTTTAATATTGTGTCGGTACTTTATGTCC--ATT-GAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
61159 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCAT-
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
61212 ATTATAATGT-ATAGATAATTTTGTAATATAACCGGTATAAATATA-CGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
61275 GGTCTACAACCTATATCGACAC-TTTTAATATTGTGTCGGTAC-TTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
61338 AATGTGTCGATACAATTTAAAAAAGT-TCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
61391 ATTATAATGTAATAGATAA-TTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
61455 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
61520 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTAC-CATCGGAACCCATA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
61573 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATA-CGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
61637 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAG-AA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
61701 AATGTGTCG-TACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCC-TA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
61753 ATTATAATGTAATAGATAATTTTGTAATATAACCGG--TAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
*
61816 GGTCTACAACCTATATCGACACTTTATAATA-T-TGTC-GTAC-TTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
61867 CCATTTAAAA
Statistics
Matches: 634, Mismatches: 7, Indels: 30
0.94 0.01 0.04
Matches are distributed among these distances:
175 20 0.03
176 47 0.07
177 61 0.10
178 38 0.06
179 114 0.18
180 114 0.18
181 42 0.07
182 160 0.25
183 38 0.06
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Done.