Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001603.1 Hibiscus syriacus cultivar Beakdansim tig00003187_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60764

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1995--2033
3
13.0
3
100
0
78
66
0
0
33
0.92
8749--8916
30
5.5
30
77
4
149
56
10
14
18
1.66
8780--8916
60
2.3
60
84
2
177
56
9
13
19
1.64
10367--10394
12
2.3
12
100
0
56
57
0
0
42
0.99
12133--12209
28
2.8
28
75
21
72
71
2
5
20
1.18
12200--12232
15
2.2
15
89
10
50
57
0
18
24
1.40
13744--14045
2
160.5
2
66
24
133
52
6
0
40
1.29
13767--14050
7
40.9
7
71
18
177
52
6
0
41
1.27
13750--14045
25
11.6
25
69
20
118
52
6
0
40
1.30
13757--14050
33
8.7
34
70
18
152
52
6
0
41
1.30
13743--14048
40
7.6
40
72
19
173
52
6
0
40
1.29
15759--15818
23
2.4
26
72
8
63
45
5
1
48
1.34
17228--17258
2
15.5
2
93
0
53
45
0
0
54
0.99
17250--17294
19
2.2
21
84
7
58
20
6
0
73
1.05
27731--27777
11
4.6
10
78
21
53
82
6
8
2
0.90
27731--27777
22
2.2
22
84
3
60
82
6
8
2
0.90
27771--27865
45
2.1
44
92
1
154
46
18
23
11
1.82
28617--29424
105
7.7
105
94
0
1366
32
25
18
23
1.97
31228--31275
12
3.8
12
76
15
51
37
0
2
60
1.09
31600--31644
2
22.5
2
100
0
90
48
0
0
51
1.00
31659--31696
20
1.9
20
89
10
60
13
7
0
78
0.94
32158--32183
3
8.7
3
100
0
52
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38514--38621
56
1.9
56
94
3
191
40
17
12
28
1.87
48209--48233
2
12.5
2
100
0
50
52
0
0
48
1.00
50567--50657
30
3.0
30
93
0
155
31
21
15
30
1.94
51740--51773
10
3.3
10
84
8
50
29
0
38
32
1.58
51973--52055
3
27.7
3
100
0
166
66
0
33
0
0.92
57648--57708
23
2.7
23
100
0
122
22
22
29
24
1.99

Tables:   1

The End!