genome.fa.s1605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001605.1 Hibiscus syriacus cultivar Beakdansim tig00003189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98105

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
848--895	2	25.0	2	91	8	82	50	0	0	50	1.00
12681--12708	2	14.0	2	100	0	56	50	0	0	50	1.00
15227--15279	23	2.3	23	83	6	63	26	1	1	69	1.09
15227--15263	3	12.7	3	88	5	58	29	0	2	67	1.04
15651--15701	10	5.1	10	77	17	52	80	3	13	1	0.94
15651--15699	15	3.4	14	77	8	53	79	4	14	2	0.97
16630--16654	2	12.5	2	100	0	50	48	0	0	52	1.00
17873--17977	46	2.3	46	91	1	167	42	5	17	34	1.73
18126--18221	38	2.5	38	91	0	156	25	22	29	22	1.99
18134--18202	21	3.5	21	70	22	67	24	27	26	21	1.99
18820--18864	2	22.5	2	100	0	90	51	0	0	48	1.00
25197--25226	13	2.3	13	94	0	51	66	0	10	23	1.21
26480--26537	25	2.4	23	80	5	71	44	10	0	44	1.38
26365--26867	36	14.1	36	77	17	393	44	7	1	45	1.43
26446--26625	59	3.0	59	93	3	288	45	8	0	45	1.34
26539--26598	25	2.4	25	97	0	111	45	10	0	45	1.37
26628--26679	28	1.9	28	88	7	81	44	5	3	46	1.45
26564--26867	39	8.0	37	83	10	334	44	6	2	46	1.43
28140--28207	17	4.6	14	72	21	50	72	0	26	1	0.94
28146--28260	18	6.7	18	76	16	79	70	0	24	5	1.07
30644--31095	216	2.1	218	88	1	667	36	13	16	33	1.88
30865--31381	258	2.0	258	88	1	777	34	15	15	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31512--31542	3	10.3	3	100	0	62	32	0	0	67	0.91
35315--35447	45	3.0	45	92	0	221	29	22	7	40	1.81
38560--38639	35	2.3	35	93	0	133	31	0	25	43	1.55
38991--39033	18	2.4	17	88	7	59	53	4	4	37	1.43
39742--39767	2	13.0	2	100	0	52	50	0	0	50	1.00
49275--49589	90	3.5	90	92	0	497	33	21	19	25	1.97
49677--49873	43	4.3	43	74	16	171	28	28	12	29	1.93
49662--49852	98	1.9	98	93	2	330	28	27	12	30	1.93
49895--49971	39	2.0	39	81	0	91	35	12	20	31	1.91
49958--49987	15	2.0	15	93	0	51	30	20	30	20	1.97
49957--50239	36	7.9	36	90	0	431	35	15	25	24	1.94
50157--50221	21	3.4	21	64	24	61	36	13	26	23	1.92
50214--50253	15	2.7	15	92	0	62	32	15	35	17	1.91
50584--50681	34	2.9	33	89	1	142	33	10	18	37	1.84
50782--51004	32	6.9	32	93	1	356	32	23	13	29	1.94
51376--51455	32	2.5	32	91	0	124	17	8	26	47	1.76
53337--53375	6	6.2	6	85	8	51	46	17	17	17	1.85
57619--57649	2	15.5	2	100	0	62	51	0	0	48	1.00
71658--71817	60	2.7	60	82	7	200	34	17	1	46	1.59
71911--72085	60	2.9	60	81	6	185	40	6	21	32	1.78
81908--81962	2	27.5	2	100	0	110	49	0	0	50	1.00
82104--82135	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82202--82250	25	2.0	24	88	4	71	65	0	2	32	1.04
89275--89862	116	5.1	115	82	5	640	26	21	15	37	1.93
89275--89861	230	2.6	230	84	5	717	26	21	14	37	1.92
90152--90212	24	2.4	25	84	13	72	14	9	1	73	1.16
90167--90212	24	1.9	24	91	8	76	13	6	0	80	0.89
90267--91060	239	3.3	237	86	3	1042	35	15	16	32	1.91
91074--91600	54	9.8	54	82	5	530	42	19	8	28	1.81
91074--91577	107	4.7	108	83	3	536	42	19	9	28	1.82
91074--91577	161	3.1	162	84	5	601	42	19	9	28	1.82
92358--92406	15	2.9	17	76	11	57	22	22	32	22	1.98
92340--92406	33	2.0	34	94	5	118	22	22	31	23	1.98
92484--92545	23	2.7	23	82	7	83	25	19	24	30	1.98
93915--93988	28	2.6	28	85	4	87	27	2	31	39	1.70
94767--94855	24	3.6	24	76	18	85	10	12	1	76	1.08
94780--94812	16	2.1	16	88	11	50	15	9	0	75	1.03
94757--94853	47	2.0	50	84	9	130	10	11	2	76	1.11
96166--96219	20	2.7	20	97	0	99	46	14	18	20	1.84
97449--97481	17	1.9	17	100	0	66	24	6	21	48	1.72

Tables:   1

The End!