Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001606.1 Hibiscus syriacus cultivar Beakdansim tig00003190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65533

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2687--3271
114
5.1
114
82
5
637
26
21
15
36
1.93
2689--3271
230
2.5
229
83
6
709
26
21
14
36
1.93
3673--4463
239
3.3
236
86
4
1022
35
16
15
32
1.91
4477--4976
53
9.4
54
83
5
498
43
19
9
28
1.81
5761--5809
15
2.9
17
76
11
57
22
22
32
22
1.98
5887--5948
23
2.7
23
82
7
83
25
19
24
30
1.98
7312--7385
28
2.6
28
85
4
87
27
2
31
39
1.70
8157--8245
24
3.7
24
75
15
85
10
12
1
76
1.08
9556--9609
20
2.7
20
97
0
99
46
14
18
20
1.84
10846--10878
17
1.9
17
100
0
66
24
6
21
48
1.72
19589--19810
74
3.0
74
99
0
435
34
2
20
42
1.66
21255--21300
11
4.4
10
81
10
56
73
2
4
19
1.10
21255--21300
21
2.2
21
84
7
58
73
2
4
19
1.10
21851--21898
19
2.5
19
86
10
62
18
4
4
72
1.17
26233--26306
20
3.7
19
78
8
76
32
17
25
24
1.97
27084--28273
81
14.8
81
87
2
1605
35
12
24
28
1.91
28333--28449
49
2.4
49
81
5
150
46
6
21
25
1.76
33111--33187
33
2.4
32
89
4
127
31
9
15
44
1.78
35390--35461
19
3.8
18
92
7
117
18
23
31
26
1.97
35389--35461
38
1.9
38
97
0
137
19
23
31
26
1.98
35447--35603
65
2.4
64
85
8
194
31
17
23
28
1.97
37731--37765
13
2.7
13
86
0
52
42
2
14
40
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38230--38280
20
2.5
20
100
0
102
29
25
15
29
1.96
38270--38367
44
2.2
44
82
7
119
30
19
20
29
1.97
42243--42532
116
2.5
116
93
0
490
28
13
8
50
1.70
43875--44028
65
2.4
64
83
7
188
32
16
22
29
1.95
48757--48783
6
4.5
6
100
0
54
33
0
51
14
1.43
53813--53864
13
3.7
15
75
15
56
53
0
0
46
1.00
53795--53949
76
2.0
77
93
3
269
49
9
5
36
1.58
56167--56218
15
3.3
15
79
10
59
71
0
0
28
0.87
56163--56221
22
2.7
22
79
7
66
71
0
0
28
0.87
56325--56502
38
4.9
35
78
16
159
40
9
5
44
1.59
56325--56527
38
5.5
36
77
11
148
41
9
4
43
1.59

Tables:   1

The End!