genome.fa.s1607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001607.1 Hibiscus syriacus cultivar Beakdansim tig00003191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136664

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671--767	31	3.1	29	77	11	86	43	7	7	42	1.60
1155--1208	20	2.5	22	72	27	62	40	33	12	12	1.82
1164--1202	20	2.0	20	90	9	64	46	33	10	10	1.72
4369--4412	22	2.0	23	95	4	81	13	4	2	79	0.98
7477--7516	16	2.7	15	92	7	64	77	5	17	0	0.94
7589--7726	69	2.0	69	91	2	224	38	23	13	23	1.91
9272--9361	36	2.5	36	94	0	153	26	21	12	40	1.88
9277--9445	86	2.0	86	83	2	214	27	20	13	39	1.89
9278--9448	87	2.0	86	85	1	234	28	19	12	39	1.88
9364--9478	36	3.2	36	80	7	142	26	21	13	39	1.90
9440--9612	65	2.6	67	86	5	210	34	21	8	36	1.83
10332--10698	110	3.4	109	86	4	485	34	24	17	23	1.96
12000--12043	18	2.4	18	80	3	52	36	2	0	61	1.09
12010--12072	21	2.8	23	72	11	60	26	4	1	66	1.20
12053--12092	14	2.7	14	84	7	53	32	2	0	65	1.06
12415--12448	18	1.9	17	88	5	50	20	2	0	76	0.92
12416--12465	26	1.9	26	83	0	64	20	6	0	74	1.03
17339--17431	28	3.2	28	67	21	82	37	5	8	48	1.57
17333--17423	29	3.0	31	65	12	89	34	5	9	50	1.59
17333--17459	60	2.1	60	97	1	238	37	6	7	48	1.58
19784--19840	29	2.0	29	82	6	71	36	0	26	36	1.57
21374--21510	60	2.3	59	82	7	161	32	18	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21537--21586	22	2.3	22	96	0	91	26	18	2	54	1.54
22190--22227	6	6.3	6	93	0	67	31	0	68	0	0.90
26195--26359	60	2.8	60	81	5	190	32	18	5	43	1.73
26490--26625	60	2.3	60	82	9	163	41	3	20	33	1.70
38028--38614	296	2.0	296	85	4	790	38	12	15	33	1.85
41401--41678	139	2.0	139	85	2	380	35	13	19	30	1.91
53709--53753	18	2.4	19	88	11	74	44	8	22	24	1.81
55099--55156	3	19.7	3	82	3	73	29	0	1	68	0.99
56084--56129	23	2.0	23	83	8	58	54	13	2	30	1.50
63929--63973	21	2.1	21	83	0	54	31	15	24	28	1.96
66742--66790	19	2.7	17	84	9	53	26	18	30	24	1.98
66742--66921	64	2.8	60	75	12	157	27	15	26	30	1.96
66868--66918	19	2.7	19	85	8	70	25	15	35	23	1.94
66932--66971	21	1.9	21	100	0	80	25	15	27	32	1.95
69519--69598	24	3.5	23	75	14	85	27	23	25	23	2.00
69496--69618	44	2.8	42	74	12	113	24	21	27	26	1.99
73427--73471	21	2.2	21	84	4	56	40	4	2	53	1.33
75408--75617	64	3.2	64	83	7	221	26	15	26	31	1.96
75514--75564	19	2.7	19	85	8	70	25	15	35	23	1.94
75578--75617	21	1.9	21	94	0	71	22	15	30	32	1.94
76072--76120	23	2.1	23	85	7	64	57	12	2	28	1.46
77715--77804	11	7.8	11	74	19	69	20	2	1	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77711--77804	6	14.7	6	72	24	59	20	2	1	76	0.95
77711--77804	29	3.1	28	80	10	98	20	2	1	76	0.95
82325--82372	12	4.1	11	84	10	60	22	12	0	64	1.27
82342--82388	21	2.1	22	84	7	60	19	10	0	70	1.16
85381--85417	12	3.1	12	88	11	58	64	0	2	32	1.07
89283--89317	15	2.3	15	95	0	61	14	25	31	28	1.95
109681--109729	20	2.4	21	82	3	64	65	0	4	30	1.11
120920--121066	58	2.6	57	79	8	163	38	9	11	40	1.74
121468--121498	16	1.9	16	93	0	53	41	3	0	54	1.16
125216--125256	18	2.3	18	95	0	73	2	7	51	39	1.43
125224--125280	6	9.2	6	82	3	69	3	3	49	43	1.36
125281--125342	3	20.3	3	87	9	81	61	0	0	38	0.96
126161--126202	22	2.0	21	86	13	59	16	26	14	42	1.86
127297--127333	14	2.6	15	87	8	51	2	21	0	75	0.92
127319--127373	23	2.3	23	81	12	58	9	18	0	72	1.10
135951--135992	19	2.2	19	83	8	50	26	21	11	40	1.88

Tables:   1

The End!