Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001608.1 Hibiscus syriacus cultivar Beakdansim tig00003192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 149230
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:9661 original size:18 final size:18
Alignment explanation
Indices: 9634--9689 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
9624 CTTGTCTGCC
9634 TATTAATGATTCTGCTCA
1 TATTAATGATTCTGCTCA
* * **
9652 TATTAGTGATTATGCTTG
1 TATTAATGATTCTGCTCA
*
9670 TATTAATGATCCTGCTCA
1 TATTAATGATTCTGCTCA
9688 TA
1 TA
9690 ATTTTTTGTC
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (18 bp):
TATTAATGATTCTGCTCA
Found at i:11950 original size:40 final size:40
Alignment explanation
Indices: 11895--11975 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
11885 ATTTATGATT
*
11895 TGTTAAAAAGGTCAAACCTAGATGAGTCAACACCTACACA
1 TGTTAAAAAGATCAAACCTAGATGAGTCAACACCTACACA
11935 TGTTAAAAAGATCAAACCTAGATGAGTCAACACCTACACA
1 TGTTAAAAAGATCAAACCTAGATGAGTCAACACCTACACA
11975 T
1 T
11976 ACTCCTATGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.21
Consensus pattern (40 bp):
TGTTAAAAAGATCAAACCTAGATGAGTCAACACCTACACA
Found at i:12761 original size:25 final size:25
Alignment explanation
Indices: 12726--12799 Score: 130
Period size: 25 Copynumber: 3.0 Consensus size: 25
12716 CAGTCATGAG
* *
12726 AAGCAGATTTGAGCTGCCAGGAAAT
1 AAGCAGTTTTGAGTTGCCAGGAAAT
12751 AAGCAGTTTTGAGTTGCCAGGAAAT
1 AAGCAGTTTTGAGTTGCCAGGAAAT
12776 AAGCAGTTTTGAGTTGCCAGGAAA
1 AAGCAGTTTTGAGTTGCCAGGAAA
12800 ATGTTGAAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (25 bp):
AAGCAGTTTTGAGTTGCCAGGAAAT
Found at i:18417 original size:30 final size:30
Alignment explanation
Indices: 18381--18441 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
18371 TTCATGGGTG
18381 ACTCTCCAGGGCTCTTACGAACTGAAACAC
1 ACTCTCCAGGGCTCTTACGAACTGAAACAC
18411 ACTCTCCAGGGCTCTTACGAACTGAAACAC
1 ACTCTCCAGGGCTCTTACGAACTGAAACAC
18441 A
1 A
18442 TGAACCCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.20
Consensus pattern (30 bp):
ACTCTCCAGGGCTCTTACGAACTGAAACAC
Found at i:21531 original size:29 final size:29
Alignment explanation
Indices: 21494--21590 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
21484 ATGGTTATAT
* *
21494 TTTAGGGATGAAAATATAATATTCAAAAG
1 TTTAAGGATGAAAATAGAATATTCAAAAG
* ** *
21523 TTTAAGGATTAATTTAGAATGAGATTC-ATAG
1 TTTAAGGATGAAAATAGAAT---ATTCAAAAG
* *
21554 TTTAGGGATGAAACTAGAATATTCAAAAG
1 TTTAAGGATGAAAATAGAATATTCAAAAG
21583 TTTAAGGA
1 TTTAAGGA
21591 GCAATTTAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
28 4 0.08
29 25 0.48
31 19 0.37
32 4 0.08
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.33
Consensus pattern (29 bp):
TTTAAGGATGAAAATAGAATATTCAAAAG
Found at i:21537 original size:60 final size:60
Alignment explanation
Indices: 21439--21616 Score: 223
Period size: 60 Copynumber: 3.0 Consensus size: 60
21429 TTACGTATCT
* * ** * * *
21439 GGATGAAATTGGAATATTCAAAAGTTTGGGGACCAATTTAAAAAGATGGTTATATTTTAG
1 GGATGAAAATAGAATATTCAAAAGTTTAAGGACCAATTTAAAATGATGATTATAGTTTAG
* ** *
21499 GGATGAAAATATAATATTCAAAAGTTTAAGGATTAATTTAGAATGA-GATTCATAGTTTAG
1 GGATGAAAATAGAATATTCAAAAGTTTAAGGACCAATTTAAAATGATGATT-ATAGTTTAG
* *
21559 GGATGAAACTAGAATATTCAAAAGTTTAAGGAGCAATTTAAAATGATGATTATAGTTT
1 GGATGAAAATAGAATATTCAAAAGTTTAAGGACCAATTTAAAATGATGATTATAGTTT
21617 GGAGACATAT
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
59 3 0.03
60 93 0.93
61 4 0.04
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34
Consensus pattern (60 bp):
GGATGAAAATAGAATATTCAAAAGTTTAAGGACCAATTTAAAATGATGATTATAGTTTAG
Found at i:22194 original size:21 final size:21
Alignment explanation
Indices: 22165--22217 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
22155 ATTCTGACTA
22165 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
22186 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
22207 TCGCAATGCGA
1 TCGCATTGCGA
22218 ATACGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:22232 original size:20 final size:20
Alignment explanation
Indices: 22207--22319 Score: 208
Period size: 20 Copynumber: 5.7 Consensus size: 20
22197 TTTTCCTAAT
22207 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
22227 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
22247 TCGCAATGCAAATACGTAAA
1 TCGCAATGCGAATACGTAAA
22267 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
22287 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
22307 TCGCAACGCGAAT
1 TCGCAATGCGAAT
22320 CTGACTATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 90 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:22350 original size:60 final size:58
Alignment explanation
Indices: 22286--22452 Score: 212
Period size: 60 Copynumber: 2.8 Consensus size: 58
22276 GAATACGTAA
* *
22286 ATCGCAATGCGAATACGTAAATCGCAACGCGAATCTGACTATCGCAACGAGATTCTGACT
1 ATCGCAA-GCGAATTC-TAAATCGCAACGCGATTCTGACTATCGCAACGAGATTCTGACT
22346 ATCGCAA-CGAGATTCTAACTATCGCAACGCGATTCTGACTATCGCAACGAGATTCTGACT
1 ATCGCAAGCGA-ATTCTAA--ATCGCAACGCGATTCTGACTATCGCAACGAGATTCTGACT
* *
22406 ATCGCAACGCG-ATTCTGACTATCGCAATGCGATTCTGACTATCGCAA
1 ATCGCAA-GCGAATTCT-A-AATCGCAACGCGATTCTGACTATCGCAA
22453 TACTGAATTT
Statistics
Matches: 96, Mismatches: 4, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
58 6 0.06
59 3 0.03
60 84 0.88
61 1 0.01
62 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (58 bp):
ATCGCAAGCGAATTCTAAATCGCAACGCGATTCTGACTATCGCAACGAGATTCTGACT
Found at i:22453 original size:20 final size:20
Alignment explanation
Indices: 22306--22452 Score: 240
Period size: 20 Copynumber: 7.3 Consensus size: 20
22296 GAATACGTAA
*
22306 ATCGCAACGCGAATCTGACT
1 ATCGCAACGCGATTCTGACT
*
22326 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
* *
22346 ATCGCAACGAGATTCTAACT
1 ATCGCAACGCGATTCTGACT
22366 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
22386 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
22406 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
22426 ATCGCAATGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
22446 ATCGCAA
1 ATCGCAA
22453 TACTGAATTT
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 119 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:23321 original size:24 final size:24
Alignment explanation
Indices: 23294--23347 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
23284 GTATTCGAAA
23294 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
23318 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
23342 TTTGAT
1 TTTGAT
23348 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:25789 original size:20 final size:19
Alignment explanation
Indices: 25764--25837 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
25754 GACATTCATT
25764 TGACTATCGCAACGCGAATA
1 TGACTATCGCAACGCGAA-A
* *
25784 TGACTATCGTAACACGGAAA
1 TGACTATCGCAACGC-GAAA
25804 TGACTATCGCAACGCGAAAA
1 TGACTATCGCAACGCG-AAA
25824 TGACTATCGCAACG
1 TGACTATCGCAACG
25838 AGAGAATCGC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.92
21 3 0.06
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (19 bp):
TGACTATCGCAACGCGAAA
Found at i:25866 original size:33 final size:34
Alignment explanation
Indices: 25809--25904 Score: 149
Period size: 33 Copynumber: 2.9 Consensus size: 34
25799 GGAAATGACT
* **
25809 ATCGCAACGCGAAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
25843 ATCGCAATGCG-AAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
*
25876 ATCGTAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCGAAAATGAAAATCGCAACG
25905 CGAATTTAGT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 30 0.53
34 27 0.47
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
Found at i:25981 original size:33 final size:34
Alignment explanation
Indices: 25919--26014 Score: 140
Period size: 33 Copynumber: 2.9 Consensus size: 34
25909 TTTAGTTTCG
*
25919 CGTTGCGATTTTCATTTTCGCATTTCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
25953 CGTTGCGATTTTCA-TTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
* ** *
25986 CGTTGTGATAGTCATTTTCGCGTTGCGAT
1 CGTTGCGATTTTCATTTTCGCATTGCGAT
26015 AGTCTGTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
33 29 0.52
34 27 0.48
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
Found at i:26139 original size:14 final size:14
Alignment explanation
Indices: 26120--26156 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
26110 CATCTATTAA
26120 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
26134 ACAAATCATCTTTT
1 ACAAATCAACATTT
26148 ACAAATCAA
1 ACAAATCAA
26157 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:27635 original size:42 final size:42
Alignment explanation
Indices: 27556--27648 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
27546 CCTCTTCAAC
* * *
27556 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
* * **
27598 GATGATAGGGGCCTCTTGAACGATAGGG-GAGGCCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGAT-GGGAGAGGACTCTTGAGG
27640 GATGACAGG
1 GATGACAGG
27649 TGAGTCGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 39 0.93
43 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.40, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
Found at i:28151 original size:20 final size:20
Alignment explanation
Indices: 28128--28216 Score: 142
Period size: 20 Copynumber: 4.5 Consensus size: 20
28118 GAAACTTAAA
28128 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
28148 ATCGCAACGTGAAAATGACT
1 ATCGCAACGCGAAAATGACT
28168 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
28188 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
28208 ATCGCAACG
1 ATCGCAACG
28217 AAAGAATCGC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:28286 original size:20 final size:20
Alignment explanation
Indices: 28261--28307 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
28251 GATTCTCTCG
28261 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
28281 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
28301 TTGCGAT
1 TTGCGAT
28308 TTTGTTGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:28338 original size:33 final size:34
Alignment explanation
Indices: 28281--28374 Score: 127
Period size: 33 Copynumber: 2.8 Consensus size: 34
28271 CAAATTCGCA
* * * *
28281 TTGCGATAGTCATTTTCGCGTTGCGATTTTGTTG
1 TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
**
28315 TTGCGATTTTCA-TTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
28348 TTGCGATAGTCATTTTCGCATTGCGAT
1 TTGCGATAGTCATTTTCGCATTGCGAT
28375 AGTAAACTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 27 0.53
34 24 0.47
ACGTcount: A:0.14, C:0.19, G:0.22, T:0.45
Consensus pattern (34 bp):
TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
Found at i:30288 original size:20 final size:20
Alignment explanation
Indices: 30265--30413 Score: 140
Period size: 20 Copynumber: 7.5 Consensus size: 20
30255 TTTGAAACTT
30265 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
30285 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** * **
30305 ACTATCGCAACATGAATTTG
1 AAAATCGCAACACGAAAATG
** *
30325 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
30344 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** * **
30364 ACTATCGCAACGCGAATTTG
1 AAAATCGCAACACGAAAATG
** *
30384 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
30403 AAAATCGCAAC
1 AAAATCGCAAC
30414 GACAAAATTG
Statistics
Matches: 107, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
19 26 0.24
20 81 0.76
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.16
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:30361 original size:59 final size:59
Alignment explanation
Indices: 30268--30421 Score: 256
Period size: 59 Copynumber: 2.6 Consensus size: 59
30258 GAAACTTAAA
* *
30268 ATCGCAACACGAAAATGAAAATCGCAACACGAAAATGACTATCGCAACATGAATTTGACT
1 ATCGCAACGCG-AAATGAAAATCGCAACACGAAAATGACTATCGCAACACGAATTTGACT
*
30328 ATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACACGAATTTGACT
30387 ATCGCAACGCGAAATGAAAATCGCAACGAC-AAAAT
1 ATCGCAACGCGAAATGAAAATCGCAAC-ACGAAAAT
30422 TGCATTGCGA
Statistics
Matches: 90, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
59 78 0.87
60 12 0.13
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.16
Consensus pattern (59 bp):
ATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACACGAATTTGACT
Found at i:30402 original size:39 final size:39
Alignment explanation
Indices: 30268--30414 Score: 161
Period size: 39 Copynumber: 3.7 Consensus size: 39
30258 GAAACTTAAA
*
30268 ATCGCAACACGAAAATGAAAATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGAAAATCGCAACGCG-AAATGACT
* ** ** **
30308 ATCGCAACATGAATTTGACTATCGCAACGCGAAATGAAA
1 ATCGCAACACGAAAATGAAAATCGCAACGCGAAATGACT
** *
30347 ATCGCAACACGAAAATGACTATCGCAACGCGAATTTGACT
1 ATCGCAACACGAAAATGAAAATCGCAACGCGAA-ATGACT
*
30387 ATCGCAACGCG-AAATGAAAATCGCAACG
1 ATCGCAACACGAAAATGAAAATCGCAACG
30415 ACAAAATTGC
Statistics
Matches: 89, Mismatches: 17, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.43, C:0.23, G:0.18, T:0.16
Consensus pattern (39 bp):
ATCGCAACACGAAAATGAAAATCGCAACGCGAAATGACT
Found at i:30812 original size:22 final size:22
Alignment explanation
Indices: 30750--30815 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
30740 TGACCGTGAA
* * *
30750 TGATTTCGCCAGAGATGGAGAC
1 TGATTTCGTCGGAGATGGGGAC
*
30772 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
30794 TGATTTCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
30816 GGATGTCGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.23, C:0.15, G:0.38, T:0.24
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:31037 original size:20 final size:20
Alignment explanation
Indices: 31014--31105 Score: 132
Period size: 20 Copynumber: 4.7 Consensus size: 20
31004 CGATAGTCAG
*
31014 ATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
31034 ATTCGCATTGCGATTTACAT
1 ATTCGCATTGCGATTTACGT
*
31054 ATTCGCATTGTGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
31074 ATTCGCATTG-AATTTACCT
1 ATTCGCATTGCGATTTACGT
31093 ATTCGCATTGCGA
1 ATTCGCATTGCGA
31106 ATTAGGAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
19 17 0.27
20 47 0.73
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:31119 original size:21 final size:21
Alignment explanation
Indices: 31095--31147 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
31085 ATTTACCTAT
*
31095 TCGCATTGCGAATTAGGAAAA
1 TCGCAATGCGAATTAGGAAAA
* *
31116 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAATTAGGAAAA
31137 TCGCAATGCGA
1 TCGCAATGCGA
31148 TAGTCAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAGGAAAA
Found at i:33292 original size:18 final size:18
Alignment explanation
Indices: 33247--33321 Score: 55
Period size: 18 Copynumber: 4.0 Consensus size: 18
33237 AATGAATATG
*
33247 ATATTTTTTAAAAATTTT-
1 ATATTTTTT-AATATTTTA
*
33265 ATATGCTTTTAATATTTTA
1 ATAT-TTTTTAATATTTTA
*
33284 ATATTTTTTATTAATATATTA
1 ATA--TTTT-TTAATATTTTA
*
33305 TTATTTTTT-ATATTTTA
1 ATATTTTTTAATATTTTA
33322 TAAATTTCGT
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
17 7 0.15
18 13 0.28
19 11 0.24
20 2 0.04
21 13 0.28
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (18 bp):
ATATTTTTTAATATTTTA
Found at i:33299 original size:21 final size:21
Alignment explanation
Indices: 33273--33315 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
33263 TTATATGCTT
*
33273 TTAATATTTTAATATTTTTTA
1 TTAATATATTAATATTTTTTA
*
33294 TTAATATATTATTATTTTTTA
1 TTAATATATTAATATTTTTTA
33315 T
1 T
33316 ATTTTATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTAATATATTAATATTTTTTA
Found at i:33603 original size:7 final size:7
Alignment explanation
Indices: 33591--33816 Score: 452
Period size: 7 Copynumber: 32.3 Consensus size: 7
33581 TCGTACTACC
33591 AGACATT
1 AGACATT
33598 AGACATT
1 AGACATT
33605 AGACATT
1 AGACATT
33612 AGACATT
1 AGACATT
33619 AGACATT
1 AGACATT
33626 AGACATT
1 AGACATT
33633 AGACATT
1 AGACATT
33640 AGACATT
1 AGACATT
33647 AGACATT
1 AGACATT
33654 AGACATT
1 AGACATT
33661 AGACATT
1 AGACATT
33668 AGACATT
1 AGACATT
33675 AGACATT
1 AGACATT
33682 AGACATT
1 AGACATT
33689 AGACATT
1 AGACATT
33696 AGACATT
1 AGACATT
33703 AGACATT
1 AGACATT
33710 AGACATT
1 AGACATT
33717 AGACATT
1 AGACATT
33724 AGACATT
1 AGACATT
33731 AGACATT
1 AGACATT
33738 AGACATT
1 AGACATT
33745 AGACATT
1 AGACATT
33752 AGACATT
1 AGACATT
33759 AGACATT
1 AGACATT
33766 AGACATT
1 AGACATT
33773 AGACATT
1 AGACATT
33780 AGACATT
1 AGACATT
33787 AGACATT
1 AGACATT
33794 AGACATT
1 AGACATT
33801 AGACATT
1 AGACATT
33808 AGACATT
1 AGACATT
33815 AG
1 AG
33817 GATATTCAAT
Statistics
Matches: 219, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 219 1.00
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (7 bp):
AGACATT
Found at i:41887 original size:159 final size:159
Alignment explanation
Indices: 41595--41914 Score: 613
Period size: 159 Copynumber: 2.0 Consensus size: 159
41585 CAAAATTGAT
41595 TGACATTGCATCTACTTTGATTATGCTTGTTGGTCATAGAATAAGAAACATATACATGGTGCATT
1 TGACATTGCATCTACTTTGATTATGCTTGTTGGTCATAGAATAAGAAACATATACATGGTGCATT
*
41660 TAGATTCTATTGATATGACTAATTTGTGCCTAGTTGCTAAGGATGAACATGATAGTTGGTTATGG
66 TAGATTCTATTGATATGACTAATTTGTGCCTAGTTGCTAAGGATGAACATGATAGTTGGTTATAG
*
41725 CATAGGAGACTAGGACATGCTAGTATGAG
131 CATAGGAGACTAGGACATGCTAGTACGAG
*
41754 TGACATTGCATCTACTTTGATTATGCTTGTTGGTCATAGAATAGGAAACATATACATGGTGCATT
1 TGACATTGCATCTACTTTGATTATGCTTGTTGGTCATAGAATAAGAAACATATACATGGTGCATT
41819 TAGATTCTATTGATATGACTAATTTGTGCCTAGTTGCTAAGGATGAACATGATAGTTGGTTATAG
66 TAGATTCTATTGATATGACTAATTTGTGCCTAGTTGCTAAGGATGAACATGATAGTTGGTTATAG
41884 CATAGGAGACTAGGACATGCTAGTACGAG
131 CATAGGAGACTAGGACATGCTAGTACGAG
41913 TG
1 TG
41915 TTTTGCAACG
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
159 158 1.00
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.34
Consensus pattern (159 bp):
TGACATTGCATCTACTTTGATTATGCTTGTTGGTCATAGAATAAGAAACATATACATGGTGCATT
TAGATTCTATTGATATGACTAATTTGTGCCTAGTTGCTAAGGATGAACATGATAGTTGGTTATAG
CATAGGAGACTAGGACATGCTAGTACGAG
Found at i:44845 original size:22 final size:22
Alignment explanation
Indices: 44817--44902 Score: 70
Period size: 22 Copynumber: 3.9 Consensus size: 22
44807 TTTTGGTGCA
*
44817 GAGGGAATCGATCCCCCCTCAT
1 GAGGGAACCGATCCCCCCTCAT
* *
44839 GAGGGAACCGATTCCCCCT-TT
1 GAGGGAACCGATCCCCCCTCAT
*
44860 GAAGGGGAACCGATTCCCCCCACA-
1 G-A-GGGAACCGA-TCCCCCCTCAT
*
44884 G-GGGAATCGATACCCCCCT
1 GAGGGAACCGAT-CCCCCCT
44903 GGGGTTCTGT
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
20 1 0.02
21 16 0.31
22 18 0.35
23 9 0.18
24 7 0.14
ACGTcount: A:0.23, C:0.36, G:0.24, T:0.16
Consensus pattern (22 bp):
GAGGGAACCGATCCCCCCTCAT
Found at i:44888 original size:21 final size:21
Alignment explanation
Indices: 44819--44901 Score: 62
Period size: 23 Copynumber: 3.8 Consensus size: 21
44809 TTGGTGCAGA
* *
44819 GGGAATCGA-TCCCCCCTCATG
1 GGGAACCGATTCCCCCCACA-G
*
44840 AGGGAACCGATTCCCCCTTTGA-AG
1 -GGGAACCGATTCCCCC---CACAG
44864 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTCCCCCCACAG
* *
44885 GGGAATCGATACCCCCC
1 GGGAACCGATTCCCCCC
44902 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
20 1 0.02
21 17 0.34
22 8 0.16
23 22 0.44
24 1 0.02
25 1 0.02
ACGTcount: A:0.23, C:0.37, G:0.24, T:0.16
Consensus pattern (21 bp):
GGGAACCGATTCCCCCCACAG
Found at i:47977 original size:18 final size:18
Alignment explanation
Indices: 47954--47994 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
47944 TGTTCTAGAA
*
47954 TTGTGCAAACATCTTACC
1 TTGTGCAAACATATTACC
47972 TTGTGCAAACATATTACC
1 TTGTGCAAACATATTACC
47990 TTGTG
1 TTGTG
47995 ATGTTTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (18 bp):
TTGTGCAAACATATTACC
Found at i:57384 original size:134 final size:133
Alignment explanation
Indices: 57199--58358 Score: 1426
Period size: 134 Copynumber: 8.7 Consensus size: 133
57189 GAAATATAAT
* * * * *
57199 GAGGGATCTGTTCTGTTTCTTCTTGAGGGAAAATCAGATATGGGAACGTTGATTCATTCTACTGC
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTGGGAA-GTTGATTCATTCCACTGT
* * * * *
57264 CACTCAGGGAAGATTAAATCGAGGTAGACTTGTTCCACTGTTACTCAGAGAAAATCAAATCTTGA
65 CACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTGA
57329 AAGA
130 AAGA
* * * * *
57333 GGGGGATCTGTTCCGCTTCTTCTTGAGGAAAAATTAGATCTGGTAAAGTTGATTCATTCCACTAT
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTGG-GAAGTTGATTCATTCCACTGT
* * *
57398 CACTCAGGGAAGATTGAATCAAGGCAGGCTTGTTTCACTGTCACTCAGGGAATATCAAATCTTGA
65 CACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTGA
*
57463 AAAA
130 AAGA
* * * * * * * *
57467 GAGGGATTTGTTCTGCTTCTTCATGAGGGAAAATTATATATTGGGGAGTTGATCCATTCCACTGT
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGAT-CTGGGAAGTTGATTCATTCCACTGT
* * * * * *
57532 CCCTTAAGGAAGATTGAATCGAGACAGATTTGTTCCACTGTCACTTAGGGAATATCAAATCTTGA
65 CACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTGA
57597 AAGA
130 AAGA
* * * * *
57601 GAGGGATCTATTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGAGTTAATCCATTCTACTGT
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATC-TGGGAAGTTGATTCATTCCACTGT
* * * * * *
57666 CACTCAGGAAAGATTGAATCGAGACAGACTTATTCCACTATTACTCAGGGAAAATCAAATCTTGA
65 CACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTGA
57731 AAGA
130 AAGA
* * ** * **
57735 GATGGATCTGGTCTACTTCTTCTTGAGGGAAAAATTAGATAGGGGGAAGTTGATTCATTCCACTG
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGG-AAAATCAGAT-CTGGGAAGTTGATTCATTCCACTG
*
57800 TCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAAGCTTG
64 TCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTG
57865 AAAGA
129 AAAGA
* * * *
57870 GAGGGATCTGTTCTGCTTCTTCTTGAGGGAAAATCAGATCTAAGGG-AGTTCATACATTCTACTG
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCT--GGGAAGTTGATTCATTCCACTG
* * * *
57934 TCACTTAGGGAAGATTGAATCGAGGCAGACTTGTTTCACTATCAC-CTAGGGAATATAAAATCTT
64 TCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTC-AGGGAATATCAAATCTT
57998 GAAAGA
128 GAAAGA
* * * *
58004 GAGAGATATGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGAGTTG-TTCATTCCACTAT
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATC-TGGGAAGTTGATTCATTCCACTGT
* * * * *
58068 CACTAAGGGAAGATTGAATCGAGGTAGACTTGTTCTACTGTTACTCATGGAATATCAAATCTTGA
65 CACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTGA
58133 AAGA
130 AAGA
* ** * * *
58137 GAGGGATTTGTTCATCTTTTTCTTCAGGGAAAATCAGATCTGGGGATGTTGATTCATTCCACTGT
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCT-GGGAAGTTGATTCATTCCACTGT
* * * *
58202 CACTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTATCACTCAGGGAATGTAAAATCTTGA
65 CACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTGA
58267 AAGA
130 AAGA
* * * * * *
58271 GAAGGATATGTTTCGCTTCTGCTTGAGGGAAAATCAGATATGGGGATGTTGATTCATTCCACTGT
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCT-GGGAAGTTGATTCATTCCACTGT
58336 CACTCAGGGAAGATTGAATCGAG
65 CACTCAGGGAAGATTGAATCGAG
58359 TTTGATTCGT
Statistics
Matches: 881, Mismatches: 132, Indels: 26
0.85 0.13 0.03
Matches are distributed among these distances:
132 1 0.00
133 114 0.13
134 641 0.73
135 125 0.14
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (133 bp):
GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTGGGAAGTTGATTCATTCCACTGTC
ACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTGAA
AGA
Found at i:57948 original size:403 final size:400
Alignment explanation
Indices: 57199--58358 Score: 1590
Period size: 403 Copynumber: 2.9 Consensus size: 400
57189 GAAATATAAT
* * * *
57199 GAGGGATCTGTTCTGTTTCTTCTTGAGGGAAAATCAGAT-ATGGGAACGTTGATTCATTCTACTG
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGA-GTT-ATTCATTCTACTG
* * *
57263 CCACTCAGGGAAGATTAAATCGAGGTAGACTTGTTCCACTGTTACTCAGAGAAAATCAAATCTTG
64 TCACTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAGGGAAAATCAAATCTTG
* * **
57328 AAAGAGGGGGATCTGTTCCGCTTCTTCTTGA-GGAAAAATTAGATCTGGTAAAGTTGATTCATTC
129 AAAGAGAGGGATCTGTT-CACTTCTTCTTGAGGGAAAAATTAGATCTGGGGAAGTTGATTCATTC
* * * *
57392 CACTATCACTCAGGGAAGATTGAATCAAGGCAGGCTTGTTTCACTGTCACTCAGGGAATATCAAA
193 CACTGTCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAA
* * * * * *
57457 TCTTGAAAAAGAGGGATTTGTTCTGCTTCTTCATGAGGGAAAATTATATATTGGGGAGTTGATCC
258 TCTTGAAAGAGAGGGATATGTTCTGCTTCTTCTTGAGGGAAAATCAGATA-TGGGGAGTTGATAC
* * * * *
57522 ATTCCACTGTCCCTTAAGGAAGATTGAATCGAGACAGATTTGTTCCACTGTCACTTAGGGAATAT
322 ATTCCACTGTCACTTAGGGAAGATTGAATCGAGACAGACTTGTTCCACTATCACCTAGGGAATAT
*
57587 CAAATCTTGAAAGA
387 AAAATCTTGAAAGA
* *
57601 GAGGGATCTATTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGAGTTAATCCATTCTACTGT
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGAGTT-ATTCATTCTACTGT
* ** * *
57666 CACTCAGGAAAGATTGAATCGAGACAGACTTATTCCACTATTACTCAGGGAAAATCAAATCTTGA
65 CACTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAGGGAAAATCAAATCTTGA
* * **
57731 AAGAGATGGATCTGGTCTACTTCTTCTTGAGGGAAAAATTAGATAGGGGGAAGTTGATTCATTCC
130 AAGAGAGGGATCTGTTC-ACTTCTTCTTGAGGGAAAAATTAGATCTGGGGAAGTTGATTCATTCC
*
57796 ACTGTCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAAG
194 ACTGTCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAAT
* * * *
57861 CTTGAAAGAGAGGGATCTGTTCTGCTTCTTCTTGAGGGAAAATCAGATCTAAGGGAGTTCATACA
259 CTTGAAAGAGAGGGATATGTTCTGCTTCTTCTTGAGGGAAAATCAGATAT-GGGGAGTTGATACA
* * *
57926 TTCTACTGTCACTTAGGGAAGATTGAATCGAGGCAGACTTGTTTCACTATCACCTAGGGAATATA
323 TTCCACTGTCACTTAGGGAAGATTGAATCGAGACAGACTTGTTCCACTATCACCTAGGGAATATA
57991 AAATCTTGAAAGA
388 AAATCTTGAAAGA
* * * * *
58004 GAGAGATATGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGAGTTGTTCATTCCACTATC
1 GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGAGTTATTCATTCTACTGTC
* * * *
58069 ACTAAGGGAAGATTGAATCGAGGTAGACTTGTTCTACTGTTACTCATGGAATATCAAATCTTGAA
66 ACTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAGGGAAAATCAAATCTTGAA
* * * * *
58134 AGAGAGGGATTTGTTCATCTTTTTCTTCAGGG-AAAATCAGATCTGGGGATGTTGATTCATTCCA
131 AGAGAGGGATCTGTTCA-CTTCTTCTTGAGGGAAAAATTAGATCTGGGGAAGTTGATTCATTCCA
* * * *
58198 CTGTCACTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTATCACTCAGGGAATGTAAAATC
195 CTGTCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATC
* * *
58263 TTGAAAGAGAAGGATATGTT-TCGCTTCTGCTTGAGGGAAAATCAGATATGGGGATGTTGATTCA
260 TTGAAAGAGAGGGATATGTTCT-GCTTCTTCTTGAGGGAAAATCAGATATGGGGA-GTTGATACA
*
58327 TTCCACTGTCACTCAGGGAAGATTGAATCGAG
323 TTCCACTGTCACTTAGGGAAGATTGAATCGAG
58359 TTTGATTCGT
Statistics
Matches: 666, Mismatches: 85, Indels: 15
0.87 0.11 0.02
Matches are distributed among these distances:
400 5 0.01
401 170 0.26
402 226 0.34
403 265 0.40
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (400 bp):
GAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATCTTGGGGAGTTATTCATTCTACTGTC
ACTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAGGGAAAATCAAATCTTGAA
AGAGAGGGATCTGTTCACTTCTTCTTGAGGGAAAAATTAGATCTGGGGAAGTTGATTCATTCCAC
TGTCACTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCT
TGAAAGAGAGGGATATGTTCTGCTTCTTCTTGAGGGAAAATCAGATATGGGGAGTTGATACATTC
CACTGTCACTTAGGGAAGATTGAATCGAGACAGACTTGTTCCACTATCACCTAGGGAATATAAAA
TCTTGAAAGA
Found at i:59909 original size:65 final size:63
Alignment explanation
Indices: 59839--59998 Score: 171
Period size: 65 Copynumber: 2.5 Consensus size: 63
59829 GAATAAATCG
* *
59839 AACATCGAATGCATTTCATGCACCGATACACATACTACGCATCGATGCACTCA-GCGT-TTTATG
1 AACATCGAATGCATTTCATGCATCGATACACA-ACCACGCATCGATGCACTCAGGC-TATTT-TG
59902 AA
63 -A
* * * * * *
59904 AACATCGAATGTATTTGATGTATCGATGCACCAGCCATGCATCGATGCACTCAGGCTATTTTGA
1 AACATCGAATGCATTTCATGCATCGATACA-CAACCACGCATCGATGCACTCAGGCTATTTTGA
* *
59968 AACATCGAATGCATTTTATGCATCGGTACAC
1 AACATCGAATGCATTTCATGCATCGATACAC
59999 TCTTAGTGCA
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
63 1 0.01
64 26 0.33
65 45 0.57
66 7 0.09
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (63 bp):
AACATCGAATGCATTTCATGCATCGATACACAACCACGCATCGATGCACTCAGGCTATTTTGA
Found at i:61928 original size:38 final size:37
Alignment explanation
Indices: 61822--62050 Score: 179
Period size: 37 Copynumber: 6.1 Consensus size: 37
61812 ATATGTTTTT
* **
61822 TTTTCGAAAACA-TTTTAAAAATATATATAATATATAG
1 TTTT-GAAAACATTTTTGAAAACGTATATAATATATAG
* *
61859 TCTTTGAAAACA-TTTTGAAAATGTATATATATATATATA
1 T-TTTGAAAACATTTTTGAAAACGTATATA-ATATATA-G
*
61898 TATATTTAAAAGCATTTTTGAAAACGTATATAATATATAG
1 T-T-TTGAAAA-CATTTTTGAAAACGTATATAATATATAG
*
61938 TTTTGAAAACATTTTTGAAAA--TTTAT-ATGATATAG
1 TTTTGAAAACATTTTTGAAAACGTATATAAT-ATATAG
* *
61973 TTTTGAAAACA-TTTTGAAAACATTTAT-ATATTATAG
1 TTTTGAAAACATTTTTGAAAACGTATATAATA-TATAG
* * *
62009 TTTTTAAAAAAAATATTTTGAAAA--TATATAATATATAA
1 -TTTT-GAAAACAT-TTTTGAAAACGTATATAATATATAG
62047 TTTT
1 TTTT
62051 TTTAAAAATA
Statistics
Matches: 164, Mismatches: 13, Indels: 30
0.79 0.06 0.14
Matches are distributed among these distances:
34 11 0.07
35 22 0.13
36 12 0.07
37 43 0.26
38 29 0.18
39 6 0.04
40 16 0.10
41 9 0.05
42 16 0.10
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (37 bp):
TTTTGAAAACATTTTTGAAAACGTATATAATATATAG
Found at i:61935 original size:35 final size:35
Alignment explanation
Indices: 61888--62045 Score: 128
Period size: 36 Copynumber: 4.4 Consensus size: 35
61878 AATGTATATA
*
61888 TATATATATATATATTT-AAAAGCATTTTTGAAAACG
1 TATATA-ATATATATTTGAAAA-CATTTTTGAAAACT
*
61924 TATATAATATATAGTTTTGAAAACATTTTTGAAAATT
1 TATATAATATATA--TTTGAAAACATTTTTGAAAACT
*
61961 TATATGATATAGT-TTTGAAAACA-TTTTGAAAACATT
1 TATATAATATA-TATTTGAAAACATTTTTGAAAAC--T
* * * *
61997 TATATATTATAGTTTTTAAAAAAAATATTTTGAAAA--
1 TATATAATATA-TATTT-GAAAACAT-TTTTGAAAACT
62033 TATATAATATATA
1 TATATAATATATA
62046 ATTTTTTTAA
Statistics
Matches: 102, Mismatches: 10, Indels: 21
0.77 0.08 0.16
Matches are distributed among these distances:
34 9 0.09
35 18 0.18
36 28 0.27
37 28 0.27
38 10 0.10
40 9 0.09
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (35 bp):
TATATAATATATATTTGAAAACATTTTTGAAAACT
Found at i:61989 original size:11 final size:11
Alignment explanation
Indices: 61973--61997 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61963 TATGATATAG
61973 TTTTGAAAACA
1 TTTTGAAAACA
61984 TTTTGAAAACA
1 TTTTGAAAACA
61995 TTT
1 TTT
61998 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:62053 original size:40 final size:40
Alignment explanation
Indices: 61978--62058 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
61968 TATAGTTTTG
* *
61978 AAAACATTTTGAAAACATTTATATATTATAGTTTTTAAAA
1 AAAACATTTTGAAAACATTAATATATAATAGTTTTTAAAA
* * *
62018 AAAATATTTTGAAAATATATAATATATAAT-TTTTTTAAAA
1 AAAACATTTTGAAAACAT-TAATATATAATAGTTTTTAAAA
62058 A
1 A
62059 TATATATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 26 0.74
41 9 0.26
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (40 bp):
AAAACATTTTGAAAACATTAATATATAATAGTTTTTAAAA
Found at i:62058 original size:26 final size:28
Alignment explanation
Indices: 62024--62077 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 28
62014 AAAAAAAATA
*
62024 TTTTGAAAATATATA-A-TATATAATTT
1 TTTTAAAAATATATATATTATATAATTT
62050 TTTTAAAAATATATATATTATATAATTT
1 TTTTAAAAATATATATATTATATAATTT
62078 AAAAAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 14 0.56
27 1 0.04
28 10 0.40
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
TTTTAAAAATATATATATTATATAATTT
Found at i:62071 original size:64 final size:64
Alignment explanation
Indices: 61997--62135 Score: 171
Period size: 64 Copynumber: 2.2 Consensus size: 64
61987 TGAAAACATT
* *
61997 TATATATTATAGT-TTTTAAAAAAAATATTTTGAAAA-TATATAATATATAAT-TTTTTTAAAA-
1 TATATATTATA-TAATTTAAAAAAAACATTTTGAAAATTATAT-AT-TAT-ATGTTTTTTAAAAT
62058 ATA
62 ATA
* *
62061 TATATATTATATAATTTAAAAAAAACATTTTGGAAATTATATATTATATGTTTTTTAAAATATT
1 TATATATTATATAATTTAAAAAAAACATTTTGAAAATTATATATTATATGTTTTTTAAAATATA
62125 TATATA-TATAT
1 TATATATTATAT
62136 TATACTATTA
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
62 2 0.03
63 19 0.28
64 41 0.61
65 5 0.07
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (64 bp):
TATATATTATATAATTTAAAAAAAACATTTTGAAAATTATATATTATATGTTTTTTAAAATATA
Found at i:62085 original size:28 final size:26
Alignment explanation
Indices: 62029--62085 Score: 60
Period size: 28 Copynumber: 2.1 Consensus size: 26
62019 AAATATTTTG
**
62029 AAAATATATAATATATAATTTTTTTAAA
1 AAAATATATAATATATAA--TTTAAAAA
* *
62057 AATATATATATTATATAATTTAAAAA
1 AAAATATATAATATATAATTTAAAAA
62083 AAA
1 AAA
62086 CATTTTGGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
26 8 0.33
28 16 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
AAAATATATAATATATAATTTAAAAA
Found at i:62149 original size:3 final size:3
Alignment explanation
Indices: 62141--62203 Score: 65
Period size: 3 Copynumber: 20.3 Consensus size: 3
62131 TATATTATAC
* * *
62141 TAT TAT TAT TATT TAT TAT TAT CATT TAT TAT TAT TGT AAT TAT T-T
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
62187 TATT TAT TAT TAT TAT T
1 TA-T TAT TAT TAT TAT T
62204 TCTTATTTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
2 2 0.04
3 40 0.80
4 8 0.16
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:62159 original size:13 final size:13
Alignment explanation
Indices: 62121--62210 Score: 94
Period size: 13 Copynumber: 6.8 Consensus size: 13
62111 TTTTTTAAAA
62121 TATTTATATATATAT
1 TATTTAT-TAT-TAT
*
62136 TATACTATTATTAT
1 TAT-TTATTATTAT
62150 TATTTATTATTAT
1 TATTTATTATTAT
*
62163 CATTTATTATTAT
1 TATTTATTATTAT
* *
62176 T-GTAATTATT-T
1 TATTTATTATTAT
62187 TATTTATTATTAT
1 TATTTATTATTAT
*
62200 TATTTCTTATT
1 TATTTATTATT
62211 TAATTATTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
11 2 0.03
12 14 0.22
13 32 0.51
14 6 0.10
15 6 0.10
16 3 0.05
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (13 bp):
TATTTATTATTAT
Found at i:62175 original size:37 final size:37
Alignment explanation
Indices: 62133--62210 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
62123 TTTATATATA
62133 TATTATACT-ATTATTATTATTTATTATTATCATTTAT
1 TATTATACTAATTATT-TTATTTATTATTATCATTTAT
** * *
62170 TATTATTGTAATTATTTTATTTATTATTATTATTTCT
1 TATTATACTAATTATTTTATTTATTATTATCATTTAT
62207 TATT
1 TATT
62211 TAATTATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
37 30 0.83
38 6 0.17
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (37 bp):
TATTATACTAATTATTTTATTTATTATTATCATTTAT
Found at i:62209 original size:7 final size:7
Alignment explanation
Indices: 62121--62219 Score: 68
Period size: 6 Copynumber: 14.7 Consensus size: 7
62111 TTTTTTAAAA
62121 TATTTAT
1 TATTTAT
*
62128 ATATATAT
1 -TATTTAT
*
62136 TATACTAT
1 TAT-TTAT
62144 TA-TTAT
1 TATTTAT
62150 TATTTAT
1 TATTTAT
62157 TA-TTAT
1 TATTTAT
*
62163 CATTTAT
1 TATTTAT
62170 TA-TTAT
1 TATTTAT
* *
62176 T-GTAAT
1 TATTTAT
62182 TA-TT-T
1 TATTTAT
62187 TATTTAT
1 TATTTAT
62194 TA-TTAT
1 TATTTAT
*
62200 TATTTCT
1 TATTTAT
62207 TATTTAAT
1 TATTT-AT
62215 TATTT
1 TATTT
62220 TGTTTTTGTT
Statistics
Matches: 73, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
5 3 0.04
6 28 0.38
7 25 0.34
8 17 0.23
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (7 bp):
TATTTAT
Found at i:63423 original size:18 final size:18
Alignment explanation
Indices: 63400--63449 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
63390 ACTTTTAAAA
63400 TAATATTT-TCTTATTTAT
1 TAATATTTAT-TTATTTAT
63418 TAATATTTATTTATTTATT
1 TAATATTTATTTATTTA-T
63437 TAAT-TTTAATTTA
1 TAATATTT-ATTTA
63450 ATTTCTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 18 0.62
19 11 0.38
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
TAATATTTATTTATTTAT
Found at i:63466 original size:24 final size:23
Alignment explanation
Indices: 63422--63468 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
63412 ATTTATTAAT
63422 ATTTATTTATTTATTTAATTTTA
1 ATTTATTTATTTATTTAATTTTA
* *
63445 ATTTAATTTCTTTGATTTATTTTT
1 ATTT-ATTTATTT-ATTTAATTTT
63469 TTATATTACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 7 0.35
25 9 0.45
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
ATTTATTTATTTATTTAATTTTA
Found at i:65347 original size:18 final size:19
Alignment explanation
Indices: 65326--65361 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
65316 ATTTAGACAT
65326 TTTGCATTTT-TTATTTTC
1 TTTGCATTTTGTTATTTTC
65344 TTTGCATTTTGTTATTTT
1 TTTGCATTTTGTTATTTT
65362 ATTTTCTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTGCATTTTGTTATTTTC
Found at i:68936 original size:84 final size:83
Alignment explanation
Indices: 68729--69499 Score: 699
Period size: 84 Copynumber: 9.4 Consensus size: 83
68719 AGTTTAGCTC
* * *
68729 AAGGGCTACCTGCCACC-AAGACCTTCGAGTTCGACTACGCTCAGC-TCTAAGGCACATCATTTG
1 AAGGGTTATCTGCTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTC-AAGGCACATCATTTG
* * *
68792 CAGAATAGCTTAAGTCGAG
65 CAGCATAACTTAAGTCTAG
* * * * * * *
68811 AAGGGCTATCTG---CCAAAGACCCT-GAAGTTCTATTACACTCAGCTTCAAGGGCATAACATTT
1 AAGGGTTATCTGCTACCAAAGACCTTCG-AGTTCGACTACGCTCAGCTTCAA-GGCACATCATTT
* * *
68872 ACAGCATAACTCAAGGCTAG
64 GCAGCATAACTTAAGTCTAG
* * * *
68892 AAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
1 AAGGGTTATCTGCTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTGC
* *
68957 AGAATAGCTT-A----AG
66 AGCATAACTTAAGTCTAG
* * * * *
68970 AAGGGCTATCTGCT---AAAGACC-CCTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTT
1 AAGGGTTATCTGCTACCAAAGACCTTC-GAGTTCGACTACGCTCAGCTTC-AAGGCACATCATTT
* * * *
69031 ACATCATAACTCAAGGCTAG
64 GCAGCATAACTTAAGTCTAG
* *
69051 AAGGGTTATCTG-TGACCAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTT
1 AAGGGTTATCTGCT-ACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTT
* * *
69115 GCAGAATAGCTTAAGTCGAG
64 GCAGCATAACTTAAGTCTAG
* ** * * * *
69135 AAGGGCTATCTG---CCAAAGACCCCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTG
1 AAGGGTTATCTGCTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTC-AAGGCACATCATTTG
*
69197 CAGCATAACTTAAGTCGAG
65 CAGCATAACTTAAGTCTAG
* * *
69216 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
1 AAGGGTTATCTG-CTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTG
* *
69281 CAGCACAACTTAAGTCTAC
65 CAGCATAACTTAAGTCTAG
* * * *
69300 AAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGC-TCAACGGCACATCATTT
1 AAGGGTTATCTG-CTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAA-GGCACATCATTT
* * *
69364 ACAGCATAACTCAAGGCTAG
64 GCAGCATAACTTAAGTCTAG
* * *
69384 AAGGGTTATCT-ATGACCAAAAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTT
1 AAGGGTTATCTGCT-ACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTT
* *
69448 GCAGCATAGCTTAAGTCAAG
64 GCAGCATAACTTAAGTCTAG
*
69468 AAGGGTTATCTGCT---AAAGACCTTTGAGTTCGA
1 AAGGGTTATCTGCTACCAAAGACCTTCGAGTTCGA
69500 TTATATTCAA
Statistics
Matches: 558, Mismatches: 100, Indels: 64
0.77 0.14 0.09
Matches are distributed among these distances:
75 26 0.05
76 20 0.04
77 1 0.00
78 14 0.03
79 3 0.01
80 67 0.12
81 94 0.17
82 12 0.02
83 23 0.04
84 239 0.43
85 58 0.10
86 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (83 bp):
AAGGGTTATCTGCTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCAAGGCACATCATTTGC
AGCATAACTTAAGTCTAG
Found at i:69189 original size:165 final size:164
Alignment explanation
Indices: 68746--69562 Score: 1029
Period size: 165 Copynumber: 5.0 Consensus size: 164
68736 ACCTGCCACC
*
68746 AAGACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * *
68811 AAGGGCTATCTGCCAAAGACCC-TGAAGTTCTATTACACTCAGCTTCAAGGGCATAACATTTACA
66 AAGGGCTATCTGCCAAAGACCCTTG-AGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACA
* *
68875 GCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
130 GCATAACTCAAGGCTAGAAGGGTTATCTGTGACCA
*
68910 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTT-A----AG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * *
68970 AAGGGCTATCTGCTAAAGACCCCTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAT
66 AAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
69035 CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTGACC-A
*
69070 AAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
*** *
69135 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAG
66 AAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
* * * **
69200 CATAACTTAAGTCGAGAAGGGTTATCTGCCAACCA
131 CATAACTCAAGGCTAGAAGGGTTATCTG-TGACCA
* * * * * *
69235 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAC
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * * * * *
69300 AAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGC-TCAACGGCACATCATTT
66 AAGGGCTATCTG-C--C-AAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTT
*
69364 ACAGCATAACTCAAGGCTAGAAGGGTTATCTATGACCAA
127 ACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACC-A
* * *
69403 AAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * * * * * * *
69468 AAGGGTTATCTGCTAAAGACCTTTGAGTTCGATTATATTCAACTTAGA-GGCAAATCAAGCTTAC
66 AAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATC-A-TTTAC
** * *
69532 ATAATAGCTCAAGGCAAGAAGGGTTATCTGT
129 AGCATAACTCAAGGCTAGAAGGGTTATCTGT
69563 CAATAAAATT
Statistics
Matches: 569, Mismatches: 68, Indels: 30
0.85 0.10 0.04
Matches are distributed among these distances:
159 89 0.16
160 58 0.10
161 1 0.00
163 1 0.00
164 86 0.15
165 159 0.28
166 34 0.06
167 4 0.01
168 114 0.20
169 23 0.04
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (164 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
CATAACTCAAGGCTAGAAGGGTTATCTGTGACCA
Found at i:69361 original size:324 final size:322
Alignment explanation
Indices: 68746--69488 Score: 942
Period size: 324 Copynumber: 2.3 Consensus size: 322
68736 ACCTGCCACC
*
68746 AAGACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
** * *
68811 AAGGGCTATCTGCCAAAGACCCTGAAGTTCTATTACACTCAGCTTCAAGGGCATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
* ** * *
68876 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCC
131 CATAACTCAAGGCGAGAAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCC
* * * *
68941 AAGGCACATCATTTGCAGAATAGCTTAAGAAGGGCTATCTGCTAAAGACCCCTGAGTTCGATTAC
196 AAGGCACATCATTTGCAGAACAACTTAAGAAGGGCTATCTGCAAAAGACCCCTGAGTTCGACTAC
* *
69006 ACTCAGCTTCGAG--GGCAC-ATCATTTACATCATAACTCAAGGCTAGAAGGGTTATCTGTGACC
261 ACTCAGCTTCGAGACAG-ACTATCA-TT--A-CATAACTCAAGGCTAGAAGGGTTATCTATGACC
69068 AA
321 AA
*
69070 AAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * *
69135 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAG
66 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
* *
69200 CATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
131 CATAACTCAAGGCGAGAAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
* * * * **
69265 CAAGGCATATCATTTGCAGCACAACTTAAGTCTACAAGGGTTGTCTGCCAACAAAAGACCTTTGA
195 CAAGGCACATCATTTGCAGAACAACTTAAG-----AAGGGCTATCTG----CAAAAGACCCCTGA
* *
69330 GTTCGACTACGCTCAGC-TC-A-ACGGCAC-ATCATTTACAGCATAACTCAAGGCTAGAAGGGTT
251 GTTCGACTACACTCAGCTTCGAGACAG-ACTATCA-TT--A-CATAACTCAAGGCTAGAAGGGTT
69391 ATCTATGACCAA
311 ATCTATGACCAA
* * *
69403 AAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* *
69468 AAGGGTTATCTGCTAAAGACC
66 AAGGGCTATCTGCCAAAGACC
69489 TTTGAGTTCG
Statistics
Matches: 372, Mismatches: 35, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
324 146 0.39
325 58 0.16
330 10 0.03
332 1 0.00
333 131 0.35
334 26 0.07
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (322 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
CATAACTCAAGGCGAGAAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCC
AAGGCACATCATTTGCAGAACAACTTAAGAAGGGCTATCTGCAAAAGACCCCTGAGTTCGACTAC
ACTCAGCTTCGAGACAGACTATCATTACATAACTCAAGGCTAGAAGGGTTATCTATGACCAA
Found at i:70269 original size:37 final size:36
Alignment explanation
Indices: 70223--70458 Score: 165
Period size: 36 Copynumber: 6.1 Consensus size: 36
70213 TATATGTTTT
*
70223 TTTTCGAAAACATTTTAAAAATATATATAATATATAG
1 TTTT-GAAAACATTTTGAAAATATATATAATATATAG
*
70260 TCTTTGAAAACATTTTGAAAATGTATATATAATATATATATATA
1 T-TTTGAAAACATTTTG-AAA---ATATAT-ATA-ATATATA-G
*
70304 TATATTTAAAAGCATTTTTGAAAACGTATATA-ATATATATAG
1 T-T-TTGAAAA-CA-TTTTGAAAA--TATATATA-ATATATAG
* *
70346 -TTTGAAAAACATTTTGAAAATTTATATGATATATAG
1 TTTTG-AAAACATTTTGAAAATATATATAATATATAG
* *
70382 TTTTGAAAACATTTTGAAAACATTTAT-ATATATAG
1 TTTTGAAAACATTTTGAAAATATATATAATATATAG
* * * *
70417 TTTTTAAAAAAAATATTTTAAAA-ATATATAATATATAA
1 -TTTT-GAAAACAT-TTTGAAAATATATATAATATATAG
70455 TTTT
1 TTTT
70459 TTTAAAGCAT
Statistics
Matches: 163, Mismatches: 16, Indels: 40
0.74 0.07 0.18
Matches are distributed among these distances:
35 8 0.05
36 36 0.22
37 31 0.19
38 29 0.18
39 4 0.02
40 5 0.03
41 6 0.04
42 3 0.02
43 17 0.10
44 3 0.02
45 11 0.07
46 5 0.03
47 5 0.03
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.43
Consensus pattern (36 bp):
TTTTGAAAACATTTTGAAAATATATATAATATATAG
Found at i:70334 original size:45 final size:46
Alignment explanation
Indices: 70242--70344 Score: 131
Period size: 45 Copynumber: 2.2 Consensus size: 46
70232 ACATTTTAAA
* *
70242 AATATATATAATATATAGTCTTTGAAAACATTTTGAAAATGTATATAT
1 AATATATAT-ATATATAGTATTTGAAAACATTTTGAAAACG-ATATAT
70290 AATATATATATATATA-TATTT-AAAAGCATTTTTGAAAACG-TATAT
1 AATATATATATATATAGTATTTGAAAA-CA-TTTTGAAAACGATATAT
70335 AATATATATA
1 AATATATATA
70345 GTTTGAAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
45 19 0.37
46 6 0.12
47 17 0.33
48 9 0.18
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.42
Consensus pattern (46 bp):
AATATATATATATATAGTATTTGAAAACATTTTGAAAACGATATAT
Found at i:70379 original size:45 final size:44
Alignment explanation
Indices: 70245--70380 Score: 119
Period size: 46 Copynumber: 3.2 Consensus size: 44
70235 TTTTAAAAAT
* *
70245 ATATATAATATATAGTCTTTG-AAAACATTTTGAAAATGTATATATA
1 ATATATAATATATA-TATTTGAAAAACATTTTGAAAAT-T-TATATG
* *
70291 ATATATATATATATATATTT-AAAAGCATTTTTG--AA---A-ACG
1 ATATATA-ATATATATATTTGAAAAACA-TTTTGAAAATTTATATG
70330 -TATATAATATATATAGTTTGAAAAACATTTTGAAAATTTATATG
1 ATATATAATATATATA-TTTGAAAAACATTTTGAAAATTTATATG
70374 ATATATA
1 ATATATA
70381 GTTTTGAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 25
0.70 0.06 0.24
Matches are distributed among these distances:
37 9 0.12
38 14 0.19
39 7 0.10
40 3 0.04
43 1 0.01
44 2 0.03
45 8 0.11
46 16 0.22
47 12 0.17
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (44 bp):
ATATATAATATATATATTTGAAAAACATTTTGAAAATTTATATG
Found at i:70398 original size:11 final size:11
Alignment explanation
Indices: 70382--70406 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70372 TGATATATAG
70382 TTTTGAAAACA
1 TTTTGAAAACA
70393 TTTTGAAAACA
1 TTTTGAAAACA
70404 TTT
1 TTT
70407 ATATATATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:70429 original size:75 final size:77
Alignment explanation
Indices: 70350--70528 Score: 174
Period size: 75 Copynumber: 2.4 Consensus size: 77
70340 ATATAGTTTG
* *
70350 AAAAACATTTTGAAAATTTATATGATATAT-A-GTTTTGAAAACA-TTTTGAAAACATTTATA-T
1 AAAAACATTTTGAAAATTTATATAATATATAATGTTTTGAAAACATTTTTGAAAA-ATATATATT
* *
70411 ATATAGTTTTTAAA
65 ATATA-ATTTAAAA
* * * * * **
70425 AAAAATATTTT-AAAA-ATATATAATATATAATTTTTTTAAAGCATTTTTTTAAAATATATATTA
1 AAAAACATTTTGAAAATTTATATAATATATAATGTTTTGAAAACATTTTTGAAAAATATATATTA
70488 TATAATTTAAAA
66 TATAATTTAAAA
* *
70500 AAAAACATTTTGGAAA-TTATATATTATAT
1 AAAAACATTTTGAAAATTTATATAATATAT
70529 GTTTTTTAAA
Statistics
Matches: 84, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
73 11 0.13
74 5 0.06
75 41 0.49
76 27 0.32
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (77 bp):
AAAAACATTTTGAAAATTTATATAATATATAATGTTTTGAAAACATTTTTGAAAAATATATATTA
TATAATTTAAAA
Found at i:70459 original size:38 final size:39
Alignment explanation
Indices: 70350--70539 Score: 119
Period size: 38 Copynumber: 5.0 Consensus size: 39
70340 ATATAGTTTG
* * *
70350 AAAAACATTTTGAAAATTTATATGATATAT-AGTTTT---
1 AAAAACATTTTGAAAA-ATATATAATATATAATTTTTAAA
* * *
70386 GAAAACATTTTGAAAACATTTAT-ATATATAGTTTTTAAA
1 AAAAACATTTTGAAAA-ATATATAATATATAATTTTTAAA
* *
70425 AAAAATATTTT-AAAAATATATAATATATAATTTTT--T
1 AAAAACATTTTGAAAAATATATAATATATAATTTTTAAA
* * ** * *
70461 TAAAGCATTTTTTTAAAATATATATTATATAA-TTTAAAA
1 AAAAACA-TTTTGAAAAATATATAATATATAATTTTTAAA
* * * **
70500 AAAAACATTTTGGAAATTATATATTATATGTTTTTTAAA
1 AAAAACATTTTGAAAAATATATAATATATAATTTTTAAA
70539 A
1 A
70540 TATTTATATA
Statistics
Matches: 118, Mismatches: 26, Indels: 17
0.73 0.16 0.11
Matches are distributed among these distances:
35 6 0.05
36 27 0.23
37 12 0.10
38 52 0.44
39 21 0.18
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (39 bp):
AAAAACATTTTGAAAAATATATAATATATAATTTTTAAA
Found at i:70558 original size:9 final size:10
Alignment explanation
Indices: 70543--70591 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
70533 TTTAAAATAT
70543 TTATATATATA
1 TTATATAT-TA
70554 TTATACTATTA
1 TTATA-TATTA
70565 TTAT-TATTA
1 TTATATATTA
70574 TTATCAT-TTA
1 TTAT-ATATTA
70584 TTAT-TATT
1 TTATATATT
70592 GTAATTATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
8 1 0.03
9 11 0.32
10 7 0.21
11 12 0.35
12 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
TTATATATTA
Found at i:70568 original size:3 final size:3
Alignment explanation
Indices: 70560--70617 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
70550 TATATTATAC
* * *
70560 TAT TAT TAT TAT TAT TAT CATT TAT TAT TAT TGT AAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
*
70605 TTT TAT TAT TAT T
1 TAT TAT TAT TAT T
70618 TCTTATTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.91
4 2 0.04
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:70633 original size:15 final size:12
Alignment explanation
Indices: 70560--70624 Score: 60
Period size: 12 Copynumber: 5.3 Consensus size: 12
70550 TATATTATAC
*
70560 TATTATTATTAT
1 TATTATTATTTT
*
70572 TATTATCATTTAT
1 TATTATTATTT-T
* **
70585 TATTATTGTAAT
1 TATTATTATTTT
70597 TATT-TTATTTT
1 TATTATTATTTT
70608 TATTATTATTTCT
1 TATTATTATTT-T
70621 TATT
1 TATT
70625 TAATTATTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
11 8 0.20
12 20 0.49
13 13 0.32
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.68
Consensus pattern (12 bp):
TATTATTATTTT
Found at i:71845 original size:11 final size:11
Alignment explanation
Indices: 71829--71862 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
71819 ATATTTTTCT
71829 TATTTATTTAA
1 TATTTATTTAA
71840 TATTTATTTAA
1 TATTTATTTAA
71851 T-TTTAATTTAA
1 TATTT-ATTTAA
71862 T
1 T
71863 TTCTTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 3 0.14
11 19 0.86
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTATTTAA
Found at i:76509 original size:23 final size:23
Alignment explanation
Indices: 76440--76520 Score: 96
Period size: 23 Copynumber: 3.7 Consensus size: 23
76430 ACACCTAACA
*
76440 GTGCATCGATGCA-TCCTTGAAT
1 GTGCATCGATGCACACCTTGAAT
* *
76462 GTGCATCGAT--ACACCATGAAG
1 GTGCATCGATGCACACCTTGAAT
* *
76483 GTGCACCGATGCACGCCTTGAAT
1 GTGCATCGATGCACACCTTGAAT
76506 GTGCATCGATGCACA
1 GTGCATCGATGCACA
76521 AGGTCATGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 1 0.02
21 15 0.32
22 10 0.21
23 21 0.45
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (23 bp):
GTGCATCGATGCACACCTTGAAT
Found at i:76536 original size:43 final size:42
Alignment explanation
Indices: 76439--76538 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 42
76429 TACACCTAAC
* * *
76439 AGTGCATCGATGCATCCTTGAATGTGCATCGATACACCATGA
1 AGTGCATCGATGCAGCCTTGAATGTGCATCGATACACAAGGA
* * *
76481 AGGTGCACCGATGCACGCCTTGAATGTGCATCGATGCACAAGGTC
1 A-GTGCATCGATGCA-GCCTTGAATGTGCATCGATACACAAGG-A
76526 A-TGCATCGATGCA
1 AGTGCATCGATGCA
76539 TCGGTCGGGT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.02
43 23 0.48
44 23 0.48
45 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (42 bp):
AGTGCATCGATGCAGCCTTGAATGTGCATCGATACACAAGGA
Found at i:76968 original size:13 final size:13
Alignment explanation
Indices: 76950--76974 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76940 TTTTTGAAAA
76950 TCTAAATTTGATT
1 TCTAAATTTGATT
76963 TCTAAATTTGAT
1 TCTAAATTTGAT
76975 GTTTTTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (13 bp):
TCTAAATTTGATT
Found at i:79292 original size:64 final size:64
Alignment explanation
Indices: 79173--79370 Score: 181
Period size: 64 Copynumber: 3.1 Consensus size: 64
79163 TTTCAGAGTG
* * * ** *
79173 ATGCACCGATGCACCAATCCATACATCGATGCAC-CATGGAATAAATTG-AACATCGAATGCATT
1 ATGCACCAATGCACCAA-CCATGCATCGATGCACTCA-GG-CTATTTTGAAAAATCGAATGCATT
*
79236 TC
63 TT
* * *
79238 ATGCACCGATGCA-TATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAAATCGAATGCATT
1 ATGCACCAATGCACCA-ACCATGCATCGATGCACTCAG-GCTATTT-TGAAAAATCGAATGCATT
79300 TT
63 TT
* * * *
79302 ATGCATCAATGCACCAGCCATGCATCGATGCACTCAGGCTATTTTGAAACATCAAATGCATTTT
1 ATGCACCAATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAAAATCGAATGCATTTT
79366 ATGCA
1 ATGCA
79371 TTGCACTCTT
Statistics
Matches: 111, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
62 1 0.01
63 4 0.04
64 85 0.77
65 21 0.19
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (64 bp):
ATGCACCAATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAAAATCGAATGCATTTT
Found at i:86897 original size:24 final size:24
Alignment explanation
Indices: 86865--86913 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
86855 TGTATGACAT
*
86865 TGTACATAGATGTTTTATACCTCA
1 TGTACATAGATGTTTTATACATCA
86889 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
86913 T
1 T
86914 CATAAAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (24 bp):
TGTACATAGATGTTTTATACATCA
Found at i:94255 original size:3 final size:3
Alignment explanation
Indices: 94247--94299 Score: 70
Period size: 3 Copynumber: 17.7 Consensus size: 3
94237 GTATTTATAT
* * * *
94247 TAA TAA TAA TAT TAA TAA TAA TAA TTA TAT TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
94295 TAA TA
1 TAA TA
94300 TTATTATTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:94268 original size:18 final size:18
Alignment explanation
Indices: 94247--94299 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
94237 GTATTTATAT
94247 TAATAATAATATTAATAA
1 TAATAATAATATTAATAA
*
94265 TAATAATTATATTAATAA
1 TAATAATAATATTAATAA
* *
94283 TAATAAAAATAATAATA
1 TAATAATAATATTAATA
94300 TTATTATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TAATAATAATATTAATAA
Found at i:96180 original size:20 final size:20
Alignment explanation
Indices: 96122--96180 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 20
96112 GCCACTTTTT
96122 CTTTATTTCTTTGCACTTTATCA
1 CTTTATTTCTTT--A-TTTATCA
* *
96145 CTTT-GTTCTATAATTTATCA
1 CTTTATTTCT-TTATTTATCA
96165 CTTTATTTCTTTATTT
1 CTTTATTTCTTTATTT
96181 TTTTCCGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
20 16 0.53
21 5 0.17
22 4 0.13
23 5 0.17
ACGTcount: A:0.19, C:0.17, G:0.03, T:0.61
Consensus pattern (20 bp):
CTTTATTTCTTTATTTATCA
Found at i:96993 original size:60 final size:59
Alignment explanation
Indices: 96910--97024 Score: 171
Period size: 61 Copynumber: 1.9 Consensus size: 59
96900 AATAATAATC
*
96910 TTCATTTAAATTAGTCCTTAAAC-TTTTAAATATTTCAATTTCATCTTCAAACTATGGCA
1 TTCATTTAAATTAGTCCTCAAACTTTTTAAATATTTCAATTTCATC-TCAAACTATGGCA
*
96969 TTCATTCTAAATTAGTGCC-CAAACTTTTTGAATATTTCAATTTCATCTCAAACTAT
1 TTCATT-TAAATTAGT-CCTCAAACTTTTTAAATATTTCAATTTCATCTCAAACTAT
97025 ACATATATAC
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
59 6 0.12
60 22 0.43
61 23 0.45
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.43
Consensus pattern (59 bp):
TTCATTTAAATTAGTCCTCAAACTTTTTAAATATTTCAATTTCATCTCAAACTATGGCA
Found at i:101940 original size:33 final size:33
Alignment explanation
Indices: 101887--101950 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
101877 AAGGGGTTTT
*
101887 GGTTCTAGCTAAGCCCGTGAAAAGCTAGGGAAA
1 GGTTCTAGCTAAGCCCGTGAAAAACTAGGGAAA
* * *
101920 GGTTCTAGTTTAGCCTGTGAAAAACTAGGGA
1 GGTTCTAGCTAAGCCCGTGAAAAACTAGGGA
101951 GTTTGTAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (33 bp):
GGTTCTAGCTAAGCCCGTGAAAAACTAGGGAAA
Found at i:106803 original size:65 final size:65
Alignment explanation
Indices: 106587--106920 Score: 196
Period size: 65 Copynumber: 5.1 Consensus size: 65
106577 GCATTTCCTT
*
106587 TGAAACAAA--TTTTGTCTCTTGAGACAGTTTCTTTTGAAAAAAAATCTTTG-G-CTAAGTTTCT
1 TGAAACAAAGTTTTTCTCTCTTGAGACAGTTTCTTTTGAAAAAAAATCTTTGAGTCT-AGTTTCT
*
106648 T
65 A
* * * * * *
106649 TGGAAACAAAGTTTTTTCTCTCTTGATATAATTTCATTTGAGAAAAAAAAACTTTGA-TATCA-T
1 T-GAAACAAAG-TTTTTCTCTCTTGAGACAGTTTC-TTT-TGAAAAAAAATCTTTGAGTCT-AGT
106712 TTCTA
61 TTCTA
* * * *
106717 TTGAAACAAA--TTTTGTCTCTTGAGATAGTTT-TTTTTAAGAAAAATCTTTGAGTCT-GTTTCT
1 -TGAAACAAAGTTTTTCTCTCTTGAGACAGTTTCTTTTGAAAAAAAATCTTTGAGTCTAGTTTCT
106778 A
65 A
** *
106779 TGAAAACAAAGTTTTCTCTCTCTTGAGACAGTTT-TTCTT-AAAATCAACCTTTGAGAT-T-GTT
1 TG-AAACAAAGTTTT-TCTCTCTTGAGACAGTTTCTT-TTGAAAAAAAATCTTTGAG-TCTAGTT
*
106840 TCCA
62 TCTA
* * * * * * *
106844 TTGAAACATA-TTTTGTCTCCCTTGAGGCAGTTTCTATGGAAACACAATATCTTTGAGTTTA-TT
1 -TGAAACAAAGTTTT-TCTCTCTTGAGACAGTTTCTTTTGAAA-A-AAAATCTTTGAGTCTAGTT
*
106907 TCTCT
62 TCT-A
106912 TGAAACAAA
1 TGAAACAAA
106921 ATCATCTTTG
Statistics
Matches: 210, Mismatches: 37, Indels: 45
0.72 0.13 0.15
Matches are distributed among these distances:
61 2 0.01
62 27 0.13
63 13 0.06
64 24 0.11
65 65 0.31
66 25 0.12
67 24 0.11
68 27 0.13
69 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (65 bp):
TGAAACAAAGTTTTTCTCTCTTGAGACAGTTTCTTTTGAAAAAAAATCTTTGAGTCTAGTTTCTA
Found at i:106909 original size:31 final size:32
Alignment explanation
Indices: 106874--106933 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
106864 CTTGAGGCAG
*
106874 TTTCTATGGAAACACAAT-ATCTTTGAGTTTA
1 TTTCTATGGAAACAAAATCATCTTTGAGTTTA
* *
106905 TTTCTCTTGAAACAAAATCATCTTTGAGT
1 TTTCTATGGAAACAAAATCATCTTTGAGT
106934 CGTTTCCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 15 0.60
32 10 0.40
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (32 bp):
TTTCTATGGAAACAAAATCATCTTTGAGTTTA
Found at i:106946 original size:30 final size:31
Alignment explanation
Indices: 106882--106948 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
106872 AGTTTCTATG
* *
106882 GAAACACAATATCTTTGAGTTTATTTCTCTT
1 GAAACAAAATATCTTTGAGTTCATTTCTCTT
*
106913 GAAACAAAATCATCTTTGAG-TCGTTTC-CTT
1 GAAACAAAAT-ATCTTTGAGTTCATTTCTCTT
106943 GAAACA
1 GAAACA
106949 GATTTTGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 9 0.28
31 14 0.44
32 9 0.28
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (31 bp):
GAAACAAAATATCTTTGAGTTCATTTCTCTT
Found at i:107364 original size:40 final size:40
Alignment explanation
Indices: 107293--107368 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
107283 CTAAAGATGA
** * *
107293 CATACCGTCCTCATCGTGTAGGAACTGTGTCATCCCCCGAC
1 CATACCGTCCTCATCACGTACGAACTATGTCA-CCCCCGAC
*
107334 CATACC-TCCTCATCACGTACGAGCTATGTCACCCC
1 CATACCGTCCTCATCACGTACGAACTATGTCACCCC
107369 TGATAACCAG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.13
40 20 0.67
41 6 0.20
ACGTcount: A:0.21, C:0.39, G:0.16, T:0.24
Consensus pattern (40 bp):
CATACCGTCCTCATCACGTACGAACTATGTCACCCCCGAC
Found at i:107440 original size:133 final size:132
Alignment explanation
Indices: 107048--107499 Score: 500
Period size: 133 Copynumber: 3.4 Consensus size: 132
107038 TCCTCAACAC
* * *
107048 GTAGGAACCGTGTCATCCCCCAACCAGAGCTCCTCATCACGTAGGAGCCATGTCACCCTTGATAA
1 GTAGGAA-CGTGTCATCCCCCGACCAGACCTCCTCATCACGTAGGAGCCATGTCACCCCTGATAA
* * * * *
107113 CCAACCGTCCTCATCGCGTAGGAACCGTGTTATCGCCCTTCCTAAATATGGTCAGAACTCTTTAT
65 CCAACCGTCCTCATCACGTAGGAACCGTGTTATCACCCTTCCTAAAGATGGACAGAACTCTTCAT
*
107178 CAC
130 CAT
* * * *
107181 ATATG-A-GTCGT-GT-CCCCGACCAAACCTCCTCATCACGTAGGAGCCATGTCACCCCTGATAA
1 GTAGGAACGT-GTCATCCCCCGACCAGACCTCCTCATCACGTAGGAGCCATGTCACCCCTGATAA
** * * * * * * *
107242 CCAACAATCTTCATCACATAGGAACCATGTTATCACCCTCCCTAAAGAT-GACATACCGTCCTCA
65 CCAACCGTCCTCATCACGTAGGAACCGTGTTATCACCCTTCCTAAAGATGGACAGAAC-TCTTCA
*
107306 TCGT
129 TCAT
* * *
107310 GTAGGAACTGTGTCATCCCCCGACCATACCTCCTCATCACGTACGAGCTATGTCACCCCTGATAA
1 GTAGGAAC-GTGTCATCCCCCGACCAGACCTCCTCATCACGTAGGAGCCATGTCACCCCTGATAA
* * *
107375 CCAGCCGTCCTCACCACGTAGGAACCGTGTTATCACCCTTCCTAAAGATGGCCAGAACTCTTCAT
65 CCAACCGTCCTCATCACGTAGGAACCGTGTTATCACCCTTCCTAAAGATGGACAGAACTCTTCAT
107440 CAT
130 CAT
* * * * * * *
107443 GTATGAGCAGTGTCATCCCCCGATCAGATCTCCTTATCACGTAGGATCCGTGTCACC
1 GTAGGAAC-GTGTCATCCCCCGACCAGACCTCCTCATCACGTAGGAGCCATGTCACC
107500 TTTAGATGTC
Statistics
Matches: 258, Mismatches: 53, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
128 5 0.02
129 93 0.36
130 4 0.02
131 4 0.02
132 4 0.02
133 143 0.55
134 5 0.02
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (132 bp):
GTAGGAACGTGTCATCCCCCGACCAGACCTCCTCATCACGTAGGAGCCATGTCACCCCTGATAAC
CAACCGTCCTCATCACGTAGGAACCGTGTTATCACCCTTCCTAAAGATGGACAGAACTCTTCATC
AT
Found at i:107700 original size:3 final size:3
Alignment explanation
Indices: 107692--107766 Score: 75
Period size: 3 Copynumber: 25.3 Consensus size: 3
107682 CTACTAAAAA
* *
107692 TAT TAT TAT T-C TAT TAT TAT TA- TAT TAAT TAT TAT TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
* *
107736 TAT AAT TTT TAT TAT TAT TAAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT T
107767 TACTCATTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
2 5 0.08
3 48 0.81
4 6 0.10
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:107708 original size:11 final size:11
Alignment explanation
Indices: 107691--107765 Score: 72
Period size: 11 Copynumber: 7.2 Consensus size: 11
107681 TCTACTAAAA
107691 ATATTATTATT
1 ATATTATTATT
*
107702 CTATTATTATT
1 ATATTATTATT
107713 ATATTAATTATT
1 ATATT-ATTATT
*
107725 ATTAATATTATT
1 A-TATTATTATT
107737 ATA--ATT-TT
1 ATATTATTATT
107745 -TATTATTATT
1 ATATTATTATT
107755 A-ATTATT-TT
1 ATATTATTATT
107764 AT
1 AT
107766 TTACTCATTT
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
7 2 0.04
8 2 0.04
9 9 0.17
10 8 0.15
11 16 0.30
12 14 0.26
13 3 0.06
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (11 bp):
ATATTATTATT
Found at i:107726 original size:18 final size:19
Alignment explanation
Indices: 107692--107766 Score: 84
Period size: 18 Copynumber: 4.1 Consensus size: 19
107682 CTACTAAAAA
*
107692 TATTATTATTCTATTATTAT
1 TATTATTAAT-TATTATTAT
*
107712 TA-TATTAATTATTATTAA
1 TATTATTAATTATTATTAT
* *
107730 TATTATT-ATAATTTTTAT
1 TATTATTAATTATTATTAT
107748 TATTATTAATTATT-TTAT
1 TATTATTAATTATTATTAT
107766 T
1 T
107767 TACTCATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
18 30 0.64
19 15 0.32
20 2 0.04
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTATTAATTATTATTAT
Found at i:109212 original size:29 final size:30
Alignment explanation
Indices: 109180--109257 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
109170 TTATTTGTAA
*
109180 TTACTATTTTAGTCCTTTTAG-TTGCTA-TT
1 TTACTATTTTAGTCCTTTAAGATT-CTATTT
**
109209 TTACTA-TTTAACCCTTTAAGATTCTATTT
1 TTACTATTTTAGTCCTTTAAGATTCTATTT
109238 TTACTATTTTAGTCCTTTAA
1 TTACTATTTTAGTCCTTTAA
109258 ATATCTGCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 14 0.34
29 16 0.39
30 11 0.27
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (30 bp):
TTACTATTTTAGTCCTTTAAGATTCTATTT
Found at i:124377 original size:20 final size:20
Alignment explanation
Indices: 124319--124377 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 20
124309 GCCACTTTTT
124319 CTTTATTTCTTTGCACTTTATCA
1 CTTTATTTCTTT--A-TTTATCA
* *
124342 CTTT-GTTCTATAATTTATCA
1 CTTTATTTCT-TTATTTATCA
124362 CTTTATTTCTTTATTT
1 CTTTATTTCTTTATTT
124378 TTTTTCGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
20 16 0.53
21 5 0.17
22 4 0.13
23 5 0.17
ACGTcount: A:0.19, C:0.17, G:0.03, T:0.61
Consensus pattern (20 bp):
CTTTATTTCTTTATTTATCA
Found at i:125216 original size:60 final size:58
Alignment explanation
Indices: 125134--125252 Score: 188
Period size: 60 Copynumber: 2.0 Consensus size: 58
125124 AATAATGATC
125134 TTCATTTAAATTAGTCCTCAAACTTTTT-AATATTTCAATTTCATCTTCAAACTATGACA
1 TTCATTTAAATTAGTCCTCAAACTTTTTGAATATTTCAATTTCATC-TCAAACTAT-ACA
125193 TTCATTCTAAATTAGTGCC-CAAACTTTTTGAATATTTCAATTTCATCTCAAACTATACA
1 TTCATT-TAAATTAGT-CCTCAAACTTTTTGAATATTTCAATTTCATCTCAAACTATACA
125252 T
1 T
125253 ATATACTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
59 10 0.18
60 28 0.49
61 19 0.33
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (58 bp):
TTCATTTAAATTAGTCCTCAAACTTTTTGAATATTTCAATTTCATCTCAAACTATACA
Found at i:125850 original size:2 final size:2
Alignment explanation
Indices: 125843--125869 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
125833 GATCAAGCTG
125843 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
125870 CTAGAAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:134666 original size:27 final size:27
Alignment explanation
Indices: 134634--134694 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
134624 TAAAACTCTG
134634 AGTGCATCGATGCATAGTATATGCATC
1 AGTGCATCGATGCATAGTATATGCATC
*
134661 AGTGCATCGATGCATAGTATGTGCATC
1 AGTGCATCGATGCATAGTATATGCATC
*
134688 GGTGCAT
1 AGTGCAT
134695 GAAATGCATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (27 bp):
AGTGCATCGATGCATAGTATATGCATC
Found at i:135245 original size:20 final size:20
Alignment explanation
Indices: 135220--135291 Score: 74
Period size: 20 Copynumber: 3.4 Consensus size: 20
135210 GAGAAAAGTG
135220 AAGAAAAAACAAAAAAGAAA
1 AAGAAAAAACAAAAAAGAAA
135240 AAGAAAAAACAAAGAAAGAAA
1 AAGAAAAAACAAA-AAAGAAA
* *
135261 GAA-AAAGCAAATAAAAAGAGCAA
1 -AAGAAA--AAACAAAAA-AGAAA
135284 AAGAAAAA
1 AAGAAAAA
135292 GGAAAGAGCA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
20 13 0.30
21 12 0.27
22 6 0.14
23 13 0.30
ACGTcount: A:0.79, C:0.06, G:0.14, T:0.01
Consensus pattern (20 bp):
AAGAAAAAACAAAAAAGAAA
Found at i:135246 original size:19 final size:19
Alignment explanation
Indices: 135224--135310 Score: 57
Period size: 20 Copynumber: 4.2 Consensus size: 19
135214 AAAGTGAAGA
135224 AAAAACAAAAAAGAAAAAG
1 AAAAACAAAAAAGAAAAAG
*
135243 AAAAAACAAAGAAAGAAAGAAA
1 -AAAAACAAA-AAAGAAA-AAG
* *
135265 AAGCAAATAAAAAGAGCAAAAG
1 AA--AAACAAAAA-AGAAAAAG
** *
135287 AAAAAGGAAAGAGCAAAAAG
1 AAAAACAAAAAAG-AAAAAG
135307 AAAA
1 AAAA
135311 CAAGAAGCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
19 2 0.04
20 24 0.45
21 9 0.17
22 8 0.15
23 10 0.19
ACGTcount: A:0.77, C:0.06, G:0.16, T:0.01
Consensus pattern (19 bp):
AAAAACAAAAAAGAAAAAG
Found at i:135261 original size:25 final size:25
Alignment explanation
Indices: 135223--135292 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
135213 AAAAGTGAAG
*
135223 AAAAAACA-AAAAAGAAAAAG-AAA
1 AAAAAAGAGAAAAAGAAAAAGCAAA
135246 AAACAAAGA-AAGAAAGAAAAAGCAAA
1 AAA-AAAGAGAA-AAAGAAAAAGCAAA
* *
135272 TAAAAAGAGCAAAAGAAAAAG
1 AAAAAAGAGAAAAAGAAAAAG
135293 GAAAGAGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.08
24 6 0.15
25 25 0.62
26 6 0.15
ACGTcount: A:0.79, C:0.06, G:0.14, T:0.01
Consensus pattern (25 bp):
AAAAAAGAGAAAAAGAAAAAGCAAA
Found at i:135310 original size:25 final size:24
Alignment explanation
Indices: 135232--135310 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 24
135222 GAAAAAACAA
*
135232 AAAAGAAAAAGAAAAAACAAAGAA-
1 AAAAGAAAAAGGAAAAACAAA-AAG
* *
135256 AGAAAGAAAAAGCAAATAA-AAAGAG
1 A-AAAGAAAAAGGAAA-AACAAAAAG
*
135281 CAAAAGAAAAAGGAAAGAGCAAAAAG
1 -AAAAGAAAAAGGAAA-AACAAAAAG
135307 AAAA
1 AAAA
135311 CAAGAAGCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 2 0.05
25 34 0.77
26 8 0.18
ACGTcount: A:0.76, C:0.05, G:0.18, T:0.01
Consensus pattern (24 bp):
AAAAGAAAAAGGAAAAACAAAAAG
Found at i:136641 original size:39 final size:38
Alignment explanation
Indices: 136581--136729 Score: 169
Period size: 39 Copynumber: 3.9 Consensus size: 38
136571 GTTTCTTTTG
*
136581 AAAAATCTTTGAGTCTATTTCACTTGAAACAAAACAAAA
1 AAAAATCTTTGAGTCTGTTTCACTTGAAACAAAA-AAAA
* * **
136620 AAAAATCTTTGTGTTTGTTTCACTTGAAAC--AAAATG
1 AAAAATCTTTGAGTCTGTTTCACTTGAAACAAAAAAAA
136656 AAAAATCTTTGAGTCTGTTTCACTTGAAACAAAATGAAAA
1 AAAAATCTTTGAGTCTGTTTCACTTGAAACAAAA--AAAA
* * *
136696 AAAAAACTTTGAGTTTGTTTC-TTTGATAACAAAA
1 AAAAATCTTTGAGTCTGTTTCACTTGA-AACAAAA
136730 TTTTGTCTCT
Statistics
Matches: 93, Mismatches: 12, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
36 30 0.32
37 2 0.02
38 2 0.02
39 31 0.33
40 28 0.30
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (38 bp):
AAAAATCTTTGAGTCTGTTTCACTTGAAACAAAAAAAA
Found at i:136664 original size:75 final size:76
Alignment explanation
Indices: 136579--136730 Score: 236
Period size: 75 Copynumber: 2.0 Consensus size: 76
136569 CAGTTTCTTT
* *
136579 TGAAAAATCTTTGAGTCTATTTCACTTGAAACAAAA-CAAAAAAAAATCTTTGTGTTTGTTTCAC
1 TGAAAAATCTTTGAGTCTATTTCACTTGAAACAAAATCAAAAAAAAAACTTTGAGTTTGTTTC-C
136643 TTGA-AACAAAA
65 TTGATAACAAAA
* * *
136654 TGAAAAATCTTTGAGTCTGTTTCACTTGAAACAAAATGAAAAAAAAAACTTTGAGTTTGTTTCTT
1 TGAAAAATCTTTGAGTCTATTTCACTTGAAACAAAATCAAAAAAAAAACTTTGAGTTTGTTTCCT
136719 TGATAACAAAA
66 TGATAACAAAA
136730 T
1 T
136731 TTTGTCTCTT
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
75 39 0.56
76 31 0.44
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (76 bp):
TGAAAAATCTTTGAGTCTATTTCACTTGAAACAAAATCAAAAAAAAAACTTTGAGTTTGTTTCCT
TGATAACAAAA
Found at i:136675 original size:36 final size:36
Alignment explanation
Indices: 136579--136696 Score: 164
Period size: 36 Copynumber: 3.2 Consensus size: 36
136569 CAGTTTCTTT
*
136579 TGAAAAATCTTTGAGTCTATTTCACTTGAAACAAAACAA
1 TGAAAAATCTTTGAGTCTGTTTCACTTGAAAC--AA-AA
** * *
136618 AAAAAAATCTTTGTGTTTGTTTCACTTGAAACAAAA
1 TGAAAAATCTTTGAGTCTGTTTCACTTGAAACAAAA
136654 TGAAAAATCTTTGAGTCTGTTTCACTTGAAACAAAA
1 TGAAAAATCTTTGAGTCTGTTTCACTTGAAACAAAA
136690 TGAAAAA
1 TGAAAAA
136697 AAAAACTTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
36 41 0.59
37 2 0.03
39 27 0.39
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (36 bp):
TGAAAAATCTTTGAGTCTGTTTCACTTGAAACAAAA
Found at i:136819 original size:63 final size:63
Alignment explanation
Indices: 136696--136819 Score: 178
Period size: 63 Copynumber: 2.0 Consensus size: 63
136686 AAAATGAAAA
* *
136696 AAAAAACTTTGAGTTTGTTTCTTTGATAACAAAATTTTGTCTCTTTTGAGACAATTTCTTTTG
1 AAAAAACTTTGAGTTTGTTTCTTTGATAACAAAATTTTGTCTCTCTTGAGACAATATCTTTTG
* * * *
136759 AAAAATCTTTGAGTTTGTTTCTTTGGA-AACAAAATTTTGTGTCTCTTGATACAGTATCTTT
1 AAAAAACTTTGAGTTTGTTTCTTT-GATAACAAAATTTTGTCTCTCTTGAGACAATATCTTT
136820 GAGTTTGTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 52 0.96
64 2 0.04
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (63 bp):
AAAAAACTTTGAGTTTGTTTCTTTGATAACAAAATTTTGTCTCTCTTGAGACAATATCTTTTG
Found at i:136884 original size:32 final size:31
Alignment explanation
Indices: 136845--136904 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
136835 GAAACAAAAG
136845 TCTTTGAGTC-TATTTCTATTAAAACAAAACAA
1 TCTTTGAGTCGT-TTTCT-TTAAAACAAAACAA
*
136877 TCTTTGAGTCGTTTTCTTTGAAACAAAA
1 TCTTTGAGTCGTTTTCTTTAAAACAAAA
136905 TTTTATCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 10 0.38
32 15 0.58
33 1 0.04
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (31 bp):
TCTTTGAGTCGTTTTCTTTAAAACAAAACAA
Found at i:137122 original size:43 final size:42
Alignment explanation
Indices: 137024--137126 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
137014 TCATCCCCCG
* * *
137024 ACCAGACC-TCCTCATAACGTAAGTGTCGTATCACCCCAGATA
1 ACCA-ACCATCCTCATCACGTAAGAGCCGTATCACCCCAGATA
* *
137066 ACCAACCCTCCTCATCACGTAAGAGCCGTGTCACCCCTAGATA
1 ACCAACCATCCTCATCACGTAAGAGCCGTATCACCCC-AGATA
* **
137109 ATCAGTCATCCTCATCAC
1 ACCAACCATCCTCATCAC
137127 ATAGGAATCG
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 3 0.06
42 29 0.57
43 19 0.37
ACGTcount: A:0.29, C:0.37, G:0.13, T:0.21
Consensus pattern (42 bp):
ACCAACCATCCTCATCACGTAAGAGCCGTATCACCCCAGATA
Found at i:137139 original size:43 final size:43
Alignment explanation
Indices: 137074--137264 Score: 149
Period size: 43 Copynumber: 4.4 Consensus size: 43
137064 TAACCAACCC
* * *
137074 TCCTCATCACGTAAGAGCCGTGTCA-CCCCTAGATAATCAGTCA
1 TCCTCATCACGTAGGAACCGTGTCATCCCCTA-ATAACCAGTCA
* * * ** * * *
137117 TCCTCATCACATAGGAATCGTGTTATCATTCTAAAAATGGCTAGTCG
1 TCCTCATCACGTAGGAACCGTGTCATC-CCCTAATAA---CCAGTCA
* * *
137164 TCCTCATCATGTAGGAACCGTGTCATCCCC---TAACCAGACC
1 TCCTCATCACGTAGGAACCGTGTCATCCCCTAATAACCAGTCA
*
137204 TCCTCATCACGTAGGAACTGTGTCA-CCCCTAGATAACCAGTCA
1 TCCTCATCACGTAGGAACCGTGTCATCCCCTA-ATAACCAGTCA
*
137247 TCCTCATCGCGTAGGAAC
1 TCCTCATCACGTAGGAAC
137265 TGAGTTATCA
Statistics
Matches: 113, Mismatches: 26, Indels: 18
0.72 0.17 0.11
Matches are distributed among these distances:
39 4 0.04
40 27 0.24
43 47 0.42
44 4 0.04
45 3 0.03
46 1 0.01
47 27 0.24
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (43 bp):
TCCTCATCACGTAGGAACCGTGTCATCCCCTAATAACCAGTCA
Found at i:140126 original size:18 final size:18
Alignment explanation
Indices: 140103--140141 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
140093 GGCGGAGAGA
140103 AGAGCGCCAGTTTG-GCGG
1 AGAGCGCC-GTTTGAGCGG
*
140121 AGAGCGTCGTTTGAGCGG
1 AGAGCGCCGTTTGAGCGG
140139 AGA
1 AGA
140142 TCCGCTTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.21, C:0.18, G:0.44, T:0.18
Consensus pattern (18 bp):
AGAGCGCCGTTTGAGCGG
Found at i:140763 original size:24 final size:24
Alignment explanation
Indices: 140735--140786 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
140725 TATTTCGAAA
140735 TTATAATTATAAAAAAATATTAAT
1 TTATAATTATAAAAAAATATTAAT
* * *
140759 TTATATTTATAATAAAATATTTAT
1 TTATAATTATAAAAAAATATTAAT
140783 TTAT
1 TTAT
140787 TTAAAACTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TTATAATTATAAAAAAATATTAAT
Found at i:141028 original size:22 final size:21
Alignment explanation
Indices: 141003--141065 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
140993 ATATGACTAT
*
141003 ATATAATAAAAATAATATTTAA
1 ATATAATAAAAATAA-AATTAA
141025 ATAT-ATAAACAAGTAAAATTAA
1 ATATAATAAA-AA-TAAAATTAA
* *
141047 A-ACAATAAAAATACAATTA
1 ATATAATAAAAATAAAATTA
141066 GAACTATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
20 7 0.20
21 8 0.23
22 17 0.49
23 3 0.09
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.29
Consensus pattern (21 bp):
ATATAATAAAAATAAAATTAA
Found at i:142246 original size:3 final size:3
Alignment explanation
Indices: 142234--142276 Score: 63
Period size: 3 Copynumber: 14.7 Consensus size: 3
142224 TAATATTTAT
142234 TAA TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
142277 TTTAAATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 4 0.11
3 31 0.84
4 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:142277 original size:9 final size:10
Alignment explanation
Indices: 142221--142277 Score: 57
Period size: 9 Copynumber: 5.9 Consensus size: 10
142211 TTTGGGCCTG
*
142221 TAATAATATT
1 TAATAATATA
* *
142231 TATTAATAAAA
1 TAATAAT-ATA
142242 TAATAATA-A
1 TAATAATATA
142251 TAATAATA-A
1 TAATAATATA
142260 TAATAATATA
1 TAATAATATA
142270 -AATAATAT
1 TAATAATAT
142278 TTAAATGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
9 26 0.63
10 8 0.20
11 7 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
TAATAATATA
Found at i:142813 original size:116 final size:113
Alignment explanation
Indices: 142516--143190 Score: 804
Period size: 113 Copynumber: 6.0 Consensus size: 113
142506 TTGAATAAGC
* * * * * * *
142516 TCTTC-TCC-TCTTTAGATGAGTTCTTCTTATTATGAACTCTTTCTAGCAATACTGATCCATCGA
1 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCTGGAAATGCTGATCCATCAA
* * **
142579 ATGATGAAATCGAGCAAAAATTTGAACAAATTCTTCTCATTATGAATT
66 ATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
* * * *
142627 CCTTCTTTCTTCTTTAGATGAGTTCTTCTCATTATGAACT-TTCTCTGGAAAAGCTGATCCATCA
1 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTC-CTGGAAATGCTGATCCATCA
* * ** *
142691 AGTGATGGATTTGAGCAAAAGGTTGACCAAATTCTTCTCATTATGAATT
65 AATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
* ** *
142740 TCTTCTTCCTTCTTCAGATGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATTTTAATCCAT
1 TCTTCTTCCTTCTTC--A-GATGAGTTCTTCTCATTATGAACTCTTCCTGGAAATGCTGATCCAT
* * *
142805 CAAATGATGAATTCAAACAAAAGGTTAAACAAATTCTTCTCATTATGAACT
63 CAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
*
142856 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCTGGAAAAGCTGATCCATCA
1 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTC-CTGGAAATGCTGATCCATCA
*
142920 AATGATGAATTCAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAATT
65 AATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
* * * * * *
142969 TCTTCTT-C-TCTTTAGATGAGTTATTCTTATTATGAACTCTTTCTGGAAATGTTAATCCATCAA
1 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCTGGAAATGCTGATCCATCAA
* * * *
143032 ATAATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACT
66 ATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
* * *** * **
143080 TCTTCTTCCTTCTTCAGATGAGTTATTCTTATTATGAACTCGAACTGGTAATGCTGATCCATTGA
1 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCTGGAAATGCTGATCCATCAA
* * * *
143145 ATGATGAATTCAAGAAAAAAGTTGAAGAAGTTCTTCTCATTATGAA
66 ATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAA
143191 CTTTTTATGG
Statistics
Matches: 484, Mismatches: 69, Indels: 20
0.84 0.12 0.03
Matches are distributed among these distances:
111 99 0.20
112 10 0.02
113 275 0.57
114 1 0.00
115 1 0.00
116 96 0.20
117 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (113 bp):
TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTCCTGGAAATGCTGATCCATCAA
ATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
Found at i:143082 original size:224 final size:224
Alignment explanation
Indices: 142516--143190 Score: 911
Period size: 224 Copynumber: 3.0 Consensus size: 224
142506 TTGAATAAGC
* * * * * *
142516 TCTTCTCCTCTTTAGATGAGTTCTTCTTATTATGAACTCTTTCTAGCAATACTGATCCATCGAAT
1 TCTTCTTCTCTTTAGATGAGTTCTTCTTATTATGAACTCTTTCTGGAAATATTAATCCATCAAAT
* * * ** * *
142581 GATGAAATCGAGCAAAAATTTGAACAAATTCTTCTCATTATGAA-TTCCTTCTTTCTTCTTTAGA
66 GATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTT-CTTCTTCCTTCTTCAGA
* * **
142645 TGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAA
130 TGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAGCAAA
* *
142710 AGGTTGACCAAATTCTTCTCATTATGAATT
195 AAGTTGAACAAATTCTTCTCATTATGAATT
* * ** *
142740 TCTTCTTCCTTCTTCAGATGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATTTTAATCCAT
1 TCTTCTT-C-TCTT--TA-GATGAGTTCTTCTTATTATGAACTCTTTCTGGAAATATTAATCCAT
*
142805 CAAATGATGAATTCAAACAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTT
61 CAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTT
142870 CAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAG
126 CAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAG
142935 CAAAAAGTTGAACAAATTCTTCTCATTATGAATT
191 CAAAAAGTTGAACAAATTCTTCTCATTATGAATT
* *
142969 TCTTCTTCTCTTTAGATGAGTTATTCTTATTATGAACTCTTTCTGGAAATGTTAATCCATCAAAT
1 TCTTCTTCTCTTTAGATGAGTTCTTCTTATTATGAACTCTTTCTGGAAATATTAATCCATCAAAT
* *
143034 AATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
66 GATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
* * **** * * ** *
143099 GAGTTATTCTTATTATGAACTCGAACTGGTAATGCTGATCCATTGAATGATGAATTCAAGAAAAA
131 GAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAA
* *
143164 AGTTGAAGAAGTTCTTCTCATTATGAA
196 AGTTGAACAAATTCTTCTCATTATGAA
143191 CTTTTTATGG
Statistics
Matches: 398, Mismatches: 47, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
224 193 0.48
225 2 0.01
226 4 0.01
227 4 0.01
228 2 0.01
229 191 0.48
230 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (224 bp):
TCTTCTTCTCTTTAGATGAGTTCTTCTTATTATGAACTCTTTCTGGAAATATTAATCCATCAAAT
GATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
GAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAA
AGTTGAACAAATTCTTCTCATTATGAATT
Found at i:144474 original size:94 final size:93
Alignment explanation
Indices: 144001--144563 Score: 842
Period size: 93 Copynumber: 6.0 Consensus size: 93
143991 CTTATTTCTA
* * *
144001 CTATGATCACATTCATCTTTCAAATTCAATGATT-GGTTCTGTGGTTTCATACCAAACCAGATCA
1 CTATGAGCACATTCATCTTTCAAATTCAATGATTGGGTTTTG-GGGTTCATACCAAACCAGATCA
*
144065 GATAACTCAAAGAACACTTCCAGAAGATA
65 GATAACTCAAAGAACACTTCCAGAAGATG
* * * * *
144094 CTATGAGCACATTCATATTTCAAATCCAATGATT-GGTTCTGTGGTTCCTACCAAACCAGATCAG
1 CTATGAGCACATTCATCTTTCAAATTCAATGATTGGGTTTTGGGGTTCATACCAAACCAGATCAG
*
144158 ATAACTCAAAGAACACTTCTAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
* * * *
144186 CTATGAGCACATTCATCTTTCAAATTTAATGATGGGGTTTTAGGGTTCATACCAAACCAGCTCAG
1 CTATGAGCACATTCATCTTTCAAATTCAATGATTGGGTTTTGGGGTTCATACCAAACCAGATCAG
144251 ATAACTCAAAGAACACTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
* * * *
144279 CTATGAGCACACTCATCTTTCAAGTCCAATGATGGGGTTTTGGGGTTCATACCAAACCAGATCAG
1 CTATGAGCACATTCATCTTTCAAATTCAATGATTGGGTTTTGGGGTTCATACCAAACCAGATCAG
144344 ATAACTCAAAGAACACTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
* * *
144372 CTATGAGCACATTCATCTTTCAAATTAAATGATTAGTTTTTCGGGGTTCATACCAAACCAGATCA
1 CTATGAGCACATTCATCTTTCAAATTCAATGATTGGGTTTT-GGGGTTCATACCAAACCAGATCA
*
144437 AATAACTCAAAGAACACTTCCAGAAGATG
65 GATAACTCAAAGAACACTTCCAGAAGATG
* * * * *
144466 CTATGAGCACACTCATCTTTCAAACTAAATGATTGGTTTTTCGGAGTTCATACCAAACCAGATCA
1 CTATGAGCACATTCATCTTTCAAATTCAATGATTGGGTTTT-GGGGTTCATACCAAACCAGATCA
144531 GATAACTCAAAGAACACTTCCAGAAGATG
65 GATAACTCAAAGAACACTTCCAGAAGATG
144560 CTAT
1 CTAT
144564 TGGGTCTTCT
Statistics
Matches: 431, Mismatches: 37, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
92 76 0.18
93 211 0.49
94 144 0.33
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.28
Consensus pattern (93 bp):
CTATGAGCACATTCATCTTTCAAATTCAATGATTGGGTTTTGGGGTTCATACCAAACCAGATCAG
ATAACTCAAAGAACACTTCCAGAAGATG
Found at i:145870 original size:12 final size:11
Alignment explanation
Indices: 145851--145908 Score: 73
Period size: 12 Copynumber: 5.1 Consensus size: 11
145841 TTGACCCCCC
145851 TTTTTTCTTTT
1 TTTTTTCTTTT
145862 TTCTTTTCTTTT
1 TT-TTTTCTTTT
*
145874 TTTTCTT-TCTT
1 TTTT-TTCTTTT
145885 TTTTTTCTTCTT
1 TTTTTTCTT-TT
145897 TTTTTTCTTTT
1 TTTTTTCTTTT
145908 T
1 T
145909 CTTCAAGCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
10 2 0.05
11 15 0.37
12 24 0.59
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:145874 original size:13 final size:12
Alignment explanation
Indices: 145851--145902 Score: 77
Period size: 12 Copynumber: 4.2 Consensus size: 12
145841 TTGACCCCCC
145851 TTTTTTCTTTTT
1 TTTTTTCTTTTT
*
145863 TCTTTTCTTTTT
1 TTTTTTCTTTTT
145875 TTTCTTTCTTTTT
1 TTT-TTTCTTTTT
*
145888 TTTCTTCTTTTT
1 TTTTTTCTTTTT
145900 TTT
1 TTT
145903 CTTTTTCTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
12 24 0.67
13 12 0.33
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:145877 original size:9 final size:9
Alignment explanation
Indices: 145850--145908 Score: 61
Period size: 9 Copynumber: 6.7 Consensus size: 9
145840 CTTGACCCCC
145850 CTTTTTTCTT
1 CTTTTTT-TT
145860 -TTTTCTTTT
1 CTTTT-TTTT
145869 CTTTTTTTT
1 CTTTTTTTT
*
145878 C-TTTCTTT
1 CTTTTTTTT
*
145886 -TTTTTCTT
1 CTTTTTTTT
145894 CTTTTTTTT
1 CTTTTTTTT
145903 CTTTTT
1 CTTTTT
145909 CTTCAAGCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
8 11 0.27
9 24 0.59
10 6 0.15
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:145882 original size:25 final size:25
Alignment explanation
Indices: 145854--145906 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 25
145844 ACCCCCCTTT
145854 TTTCTTTTTTCTT-TTCTTTTTTTTC
1 TTTCTTTTTT-TTCTTCTTTTTTTTC
145879 TTTCTTTTTTTTCTTCTTTTTTTTC
1 TTTCTTTTTTTTCTTCTTTTTTTTC
145904 TTT
1 TTT
145907 TTCTTCAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 2 0.07
25 25 0.93
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (25 bp):
TTTCTTTTTTTTCTTCTTTTTTTTC
Done.