genome.fa.s1609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001609.1 Hibiscus syriacus cultivar Beakdansim tig00003193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159306

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4051--4145	24	4.0	24	76	2	84	48	17	12	21	1.80
4049--4142	48	2.0	48	82	4	118	48	17	12	21	1.79
4103--4157	24	2.3	25	75	9	60	45	16	18	20	1.86
4202--5100	447	2.0	448	93	0	1523	33	18	14	34	1.90
6938--6974	14	2.6	14	95	0	65	27	37	21	13	1.91
8490--8543	26	2.1	26	96	0	99	37	29	12	20	1.90
23076--23119	17	2.5	17	88	3	61	34	4	0	61	1.16
23075--23133	17	3.3	18	79	9	59	35	3	1	59	1.24
23645--23742	29	3.3	28	70	21	83	40	5	20	33	1.74
28216--28310	32	3.0	32	80	0	91	27	24	27	21	1.99
28265--28343	32	2.5	31	85	8	97	29	25	26	18	1.98
29204--29263	22	2.8	22	82	12	88	26	26	20	26	1.99
36166--36225	20	3.0	20	92	4	95	21	20	31	26	1.98
36493--36522	13	2.2	14	94	5	53	66	3	0	30	1.07
36655--36692	19	2.0	19	100	0	76	26	42	0	31	1.56
42315--42354	21	1.9	21	89	0	62	30	7	7	55	1.56
44437--44470	17	2.1	16	88	5	50	14	8	0	76	1.01
50823--50865	20	2.1	21	83	8	54	18	16	0	65	1.28
50822--50871	19	2.5	20	72	15	50	18	20	0	62	1.34
54649--54682	17	2.1	16	88	5	50	14	8	0	76	1.01
58621--58705	38	2.4	34	78	14	107	47	0	0	52	1.00
58786--58861	35	2.1	36	87	2	109	18	36	13	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60500--60540	22	2.0	21	85	9	57	26	24	24	24	2.00
60694--60734	16	2.6	16	88	3	57	29	21	12	36	1.90
61641--61666	2	13.0	2	100	0	52	50	0	0	50	1.00
62587--62621	15	2.3	15	90	9	54	2	11	2	82	0.88
66922--66978	27	2.1	27	96	0	105	49	0	7	43	1.29
85133--85247	58	2.0	58	87	0	167	33	17	4	44	1.68
85139--85296	58	2.7	58	82	4	158	31	21	4	43	1.72
87710--87843	60	2.2	60	78	10	139	39	5	20	35	1.75
88405--88449	23	2.0	23	86	0	63	40	11	15	33	1.83
88509--89221	200	3.6	199	85	3	899	31	14	14	39	1.86
92171--92220	3	16.7	3	78	0	55	24	32	2	42	1.66
92175--92220	6	7.7	6	92	0	65	21	32	2	43	1.65
92171--92220	12	4.2	12	92	0	73	24	32	2	42	1.66
93694--95042	200	6.8	200	86	4	1571	32	15	13	38	1.87
93694--95042	401	3.4	400	82	6	1607	32	15	13	38	1.87
95359--95401	19	2.3	19	92	4	70	51	11	6	30	1.65
96945--96981	18	2.1	18	94	0	65	10	29	0	59	1.31
97372--97406	18	1.9	18	88	11	54	14	48	5	31	1.67
99622--100284	182	3.7	182	87	3	955	27	16	14	42	1.86
100448--100519	21	3.4	21	76	10	76	22	20	25	31	1.98
101363--101404	21	2.0	21	95	0	75	28	30	21	19	1.97
110608--110686	21	3.5	21	67	21	52	20	18	17	43	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110602--110706	48	2.2	48	92	0	174	21	22	14	40	1.90
112988--113081	29	3.2	29	68	11	91	36	10	3	50	1.53
112970--113085	60	1.9	60	98	0	223	34	10	4	50	1.56
113940--114000	29	2.1	30	96	3	115	16	11	16	55	1.68
114625--114681	29	1.9	30	89	3	89	49	19	15	15	1.80
128390--128449	24	2.5	24	77	0	66	33	30	18	18	1.95
131302--131345	23	1.9	23	90	0	70	31	29	9	29	1.88
134306--134485	59	3.1	59	83	5	222	36	20	2	40	1.65
134337--134421	29	3.0	29	69	22	72	38	18	0	42	1.51
135934--135983	15	3.5	15	78	15	61	28	0	62	10	1.27
144496--144537	17	2.6	16	85	11	50	42	2	0	54	1.13
149614--149638	12	2.1	12	100	0	50	56	0	12	32	1.36
156150--156242	42	2.2	42	92	0	159	13	22	21	41	1.88
156163--156233	21	3.4	21	69	21	67	9	21	22	46	1.80
159062--159205	73	2.0	71	97	2	270	25	20	9	44	1.82

Tables:   1

The End!