genome.fa.s161.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000161.1 Hibiscus syriacus cultivar Beakdansim tig00000284_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58708

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236--287	24	2.2	24	82	0	59	36	21	19	23	1.95
1078--1207	20	6.4	20	83	5	172	23	18	29	28	1.98
1099--1249	81	1.9	81	82	8	191	23	16	28	31	1.96
10912--11025	30	3.8	30	89	0	174	14	22	35	26	1.93
12160--12204	18	2.5	18	88	0	72	55	2	13	28	1.50
14085--14114	12	2.4	13	94	5	53	66	6	3	23	1.30
23927--23974	23	2.1	23	88	0	69	35	12	18	33	1.89
24701--24737	18	2.1	18	89	0	56	51	10	5	32	1.60
24941--25005	23	2.8	23	80	0	76	36	16	7	38	1.78
25363--25414	23	2.3	22	90	6	77	44	19	1	34	1.62
25373--25435	23	2.7	23	90	0	90	38	19	6	36	1.77
25750--25792	21	2.1	21	86	4	61	48	9	13	27	1.73
25792--25864	23	3.2	23	84	7	94	39	20	5	34	1.76
24943--27248	429	5.4	431	98	1	4456	38	13	8	40	1.74
26216--26267	23	2.3	22	90	6	77	44	19	1	34	1.62
26226--26288	23	2.7	23	90	0	90	38	19	6	36	1.77
24943--27248	853	2.7	859	98	1	4448	38	13	8	40	1.74
26645--26696	23	2.3	22	90	6	77	44	19	1	34	1.62
26655--26717	23	2.7	23	90	0	90	38	19	6	36	1.77
27077--27128	23	2.3	22	90	6	77	44	19	1	34	1.62
27087--27149	23	2.7	23	90	0	90	38	19	6	36	1.77
28202--28721	199	2.6	199	97	0	979	31	15	15	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28802--28846	19	2.4	19	92	0	72	57	8	2	31	1.41
32801--32853	24	2.2	24	83	6	63	26	7	13	52	1.66
32998--33043	20	2.4	18	79	13	56	19	17	8	54	1.68
33165--33210	20	2.3	20	89	10	76	17	17	10	54	1.70
33276--33722	228	2.0	226	93	2	772	39	7	8	44	1.62
34330--34406	29	2.7	29	95	0	136	40	27	14	18	1.89
45186--45233	15	3.2	15	82	8	53	47	22	2	27	1.62
46473--46567	44	2.2	44	98	0	181	43	8	21	27	1.81
53484--53508	6	4.2	6	100	0	50	20	16	64	0	1.30
53552--53581	13	2.3	13	100	0	60	13	56	16	13	1.67
53616--53709	2	50.0	2	73	12	65	51	0	0	48	1.00
53633--53681	19	2.5	21	78	18	61	57	0	0	42	0.99

Tables:   1

The End!