Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001612.1 Hibiscus syriacus cultivar Beakdansim tig00003202_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113668

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1700--1776
32
2.4
31
78
6
73
18
12
25
42
1.86
1754--1801
22
2.2
22
84
0
60
10
12
29
47
1.74
12485--12522
6
6.3
6
96
0
67
50
0
31
18
1.47
16634--16687
21
2.6
21
96
0
99
48
5
14
31
1.67
28283--28321
16
2.4
16
91
4
60
33
7
23
35
1.83
28283--28316
16
2.1
17
94
5
61
35
5
23
35
1.79
29071--29103
15
2.1
16
94
5
59
51
18
24
6
1.68
48754--48814
6
10.2
6
96
0
95
29
49
16
4
1.66
48812--48860
5
9.8
5
93
0
62
16
36
40
6
1.73
54611--54708
6
16.3
6
100
0
196
33
48
17
0
1.47
75105--75157
26
2.0
26
100
0
106
26
7
35
30
1.84
75626--75655
15
2.0
15
100
0
60
40
26
0
33
1.57
77823--77867
23
2.0
23
86
0
63
24
24
26
24
2.00
77843--78149
149
2.1
149
96
0
560
34
20
16
28
1.95
78250--78277
14
2.0
14
100
0
56
35
28
7
28
1.84
78784--78817
2
17.0
2
93
0
59
47
2
0
50
1.16
79679--79723
21
2.1
21
87
0
63
15
24
28
31
1.96
83350--83379
2
14.5
2
93
6
51
3
46
0
50
1.18
83382--83447
2
33.0
2
100
0
132
50
0
0
50
1.00
84989--85020
5
6.4
5
100
0
64
37
21
40
0
1.54
85763--85801
6
6.5
6
100
0
78
0
15
51
33
1.44
85891--86000
20
5.4
20
76
10
116
16
21
25
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85991--86045
21
2.7
20
86
5
74
12
20
16
50
1.77
85891--86004
40
2.8
40
93
2
192
15
21
24
37
1.93
87514--87578
28
2.3
28
97
0
121
33
10
10
44
1.74
94176--94233
30
2.0
29
86
6
82
48
5
3
43
1.42
95061--95453
65
6.1
65
89
0
567
31
13
22
32
1.93
98538--98572
18
1.9
18
88
0
52
68
2
5
22
1.24
104260--104293
9
3.7
9
88
7
50
76
20
2
0
0.92

Tables:   1

The End!