Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001615.1 Hibiscus syriacus cultivar Beakdansim tig00003207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88191

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
878--995
52
2.3
51
89
5
175
22
23
30
23
1.99
1461--1498
6
6.5
6
91
8
53
28
55
15
0
1.41
1462--1489
13
2.2
13
100
0
56
28
57
14
0
1.38
2713--2784
21
3.4
21
96
0
126
27
27
19
25
1.99
2797--2894
20
4.7
22
74
19
70
23
20
24
31
1.98
2797--2908
21
5.4
21
78
16
101
22
20
25
31
1.98
5392--5445
24
2.1
27
83
13
69
53
7
3
35
1.47
19598--19836
84
2.9
83
83
3
286
40
15
7
36
1.76
22370--22398
2
14.5
2
100
0
58
48
0
0
51
1.00
22622--22755
65
2.1
64
88
6
200
46
3
11
38
1.58
24381--24437
16
3.6
16
80
0
69
22
22
14
40
1.90
30302--30339
19
2.0
19
89
0
58
52
0
0
47
1.00
32030--32088
18
3.3
18
68
15
50
27
32
8
32
1.87
35931--36091
64
2.5
62
78
5
169
32
19
23
24
1.98
36060--36136
20
3.7
20
77
14
75
27
23
24
24
2.00
36971--37002
8
4.0
8
91
0
55
25
9
25
40
1.85
36972--37004
16
2.1
16
100
0
66
27
6
24
42
1.78
37257--37359
30
3.4
30
98
0
197
24
20
23
32
1.98
40762--40918
64
2.5
63
79
7
172
33
19
23
23
1.97
40887--40960
20
3.5
20
76
15
69
27
22
25
24
2.00
41794--41818
4
6.2
4
100
0
50
28
0
24
48
1.52
42071--42203
30
4.4
30
92
0
221
26
20
22
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44781--44832
25
2.0
27
85
7
72
48
1
3
46
1.31
44860--44899
13
3.2
12
82
10
53
55
0
0
45
0.99
44859--44893
12
2.8
12
86
4
52
48
0
0
51
1.00
44859--44906
25
1.9
25
86
0
69
52
0
2
45
1.12
45119--45155
20
1.9
19
89
10
58
45
10
24
18
1.81
45298--45337
21
1.9
21
84
0
53
57
2
0
40
1.12
47852--47878
2
13.5
2
100
0
54
48
0
0
51
1.00
50645--50741
18
5.1
19
79
9
108
64
8
16
10
1.47
50645--50741
38
2.6
38
94
0
167
64
8
16
10
1.47
51638--51683
21
2.2
21
88
3
67
34
4
0
60
1.16
51633--51719
27
3.5
26
66
24
69
35
3
1
59
1.22
52901--52954
21
2.4
25
74
25
66
48
0
0
51
1.00
53220--53258
14
2.8
14
88
0
60
61
17
10
10
1.55
53524--53636
40
2.8
39
85
6
156
44
8
3
43
1.52
68645--68677
2
16.5
2
93
0
57
48
0
3
48
1.17
73727--73762
18
1.9
19
88
5
56
33
2
0
63
1.08
73748--73798
20
2.7
18
72
21
59
35
3
3
56
1.36
74658--74798
58
2.5
56
87
4
219
41
7
4
46
1.52
76892--76922
2
15.0
2
93
6
53
48
0
3
48
1.17
76930--76994
21
3.3
21
71
26
61
36
0
3
60
1.13
76943--77031
46
1.9
47
83
2
117
32
0
4
62
1.15
77154--77216
21
3.0
21
92
0
99
34
30
14
20
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77975--78069
2
53.5
2
70
22
61
55
1
0
43
1.06
77977--78069
33
2.8
34
90
6
145
55
1
0
43
1.06
77958--78040
44
1.9
44
97
2
159
56
0
0
43
0.99
83804--84292
241
2.0
240
99
0
960
34
19
18
27
1.95
85396--85464
26
2.6
27
97
2
131
39
7
17
36
1.77

Tables:   1

The End!