genome.fa.s1618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001618.1 Hibiscus syriacus cultivar Beakdansim tig00003215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104193

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2787--2834	20	2.4	20	92	0	78	39	14	37	8	1.76
5135--5174	17	2.3	19	87	12	59	35	2	2	60	1.24
5347--5386	2	20.0	2	94	0	71	52	0	0	47	1.00
6537--6608	30	2.4	30	79	4	74	54	0	6	38	1.28
6680--6748	35	2.0	35	94	5	122	26	17	10	46	1.79
7944--7991	2	24.0	2	100	0	96	50	0	0	50	1.00
21709--21744	18	2.0	18	89	10	56	8	30	0	61	1.26
27794--27851	20	2.8	20	80	12	64	44	3	1	50	1.29
27798--27851	22	2.6	20	83	11	72	44	1	1	51	1.22
34516--34552	3	12.3	3	100	0	74	67	0	0	32	0.91
39922--39952	15	2.1	15	100	0	62	32	19	19	29	1.96
41025--41076	24	2.2	24	82	0	59	5	34	13	46	1.67
41044--41112	36	1.9	36	87	0	102	4	28	15	50	1.63
41067--41338	24	10.8	24	71	14	167	6	32	14	46	1.69
41069--41338	48	5.4	48	73	15	197	6	32	14	46	1.69
41067--41338	72	3.6	72	69	14	206	6	32	14	46	1.69
41241--41328	12	7.3	12	68	0	68	5	35	12	46	1.65
41709--41900	39	4.9	39	83	4	217	24	21	16	37	1.93
41995--42093	39	2.5	39	86	3	119	18	26	23	32	1.97
42011--42097	39	2.2	39	91	0	138	18	28	21	31	1.97
42024--42124	39	2.6	39	85	0	139	18	24	21	34	1.96
42024--42344	78	4.1	78	79	3	225	16	28	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42118--42341	39	5.7	39	87	2	290	14	30	16	37	1.89
42820--42849	3	10.0	3	100	0	60	33	33	33	0	1.58
43478--43514	3	12.3	3	94	0	65	62	0	2	35	1.10
43657--43810	78	1.9	78	80	5	175	43	11	7	37	1.70
45952--45983	14	2.3	14	100	0	64	43	28	6	21	1.77
55110--55155	23	2.0	23	91	0	74	34	13	2	50	1.53
67861--67905	21	2.1	21	87	0	63	44	11	17	26	1.82
72562--72603	23	1.9	22	85	9	59	21	35	14	28	1.92
75016--75050	18	1.9	18	100	0	70	20	28	17	34	1.95
76362--76437	38	2.0	37	82	7	91	48	2	1	47	1.24
82714--82761	23	2.1	23	88	0	69	35	12	18	33	1.89
83137--83190	23	2.5	20	75	18	54	42	18	1	37	1.61
83152--83214	23	2.7	23	90	0	90	38	19	6	36	1.77
82873--84174	430	3.0	431	99	0	2590	38	12	8	39	1.74
83567--83620	23	2.5	20	75	18	54	42	18	1	37	1.61
83582--83644	23	2.7	23	90	0	90	38	19	6	36	1.77
83998--84051	23	2.5	20	75	18	54	42	18	1	37	1.61
84013--84075	23	2.7	23	90	0	90	38	19	6	36	1.77
86630--87298	182	3.7	184	97	1	1263	34	15	15	34	1.89
88665--88715	3	17.0	3	83	0	66	25	33	3	37	1.74
88665--88727	12	5.2	12	90	0	81	23	33	6	36	1.80
88669--88730	18	3.4	18	88	0	88	20	33	6	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88669--88730	6	10.3	6	83	0	61	20	33	6	38	1.79
90193--91405	196	6.1	199	94	2	2092	33	15	15	36	1.88
91470--91549	38	2.1	38	83	2	99	55	10	2	32	1.47
91486--91549	19	3.4	19	95	0	110	56	9	3	31	1.47
93324--93389	33	2.0	33	87	0	96	24	45	1	28	1.62
95699--95745	20	2.4	19	79	10	58	19	17	8	55	1.67
95863--95912	20	2.5	20	81	12	75	22	16	10	52	1.73
99616--99645	4	7.8	4	92	7	53	26	0	0	73	0.84
99616--99645	11	2.6	11	94	5	51	26	0	0	73	0.84

Tables:   1

The End!