genome.fa.s1619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001619.1 Hibiscus syriacus cultivar Beakdansim tig00003217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141596

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4907--4952	20	2.3	20	88	0	65	23	28	21	26	1.99
5756--5809	24	2.3	23	90	6	90	22	18	20	38	1.93
5999--6035	14	2.6	14	91	4	56	51	21	21	5	1.68
8139--8416	135	2.0	138	94	3	490	28	13	15	43	1.84
8387--8532	20	7.7	20	79	9	162	32	21	19	25	1.97
8522--8582	20	3.0	20	87	0	95	13	19	21	45	1.84
8672--8807	63	2.1	65	94	2	240	52	15	3	27	1.59
8765--8819	29	1.9	28	85	3	74	47	18	0	34	1.49
8760--8821	14	4.3	14	79	6	70	46	16	0	37	1.47
10202--10275	21	3.5	21	75	0	85	24	17	33	24	1.96
10191--10272	42	2.0	42	87	4	121	24	17	36	21	1.94
10193--10298	42	2.5	42	80	3	115	27	16	33	21	1.95
10773--10815	19	2.2	20	87	4	61	51	23	11	13	1.74
10806--10870	20	3.2	20	91	0	103	35	26	21	16	1.95
10918--11016	33	2.9	34	78	3	128	16	20	20	43	1.88
12907--12999	20	4.7	20	70	2	71	46	19	16	18	1.85
13318--13374	22	2.6	22	91	0	96	17	19	43	19	1.88
15333--15357	8	3.1	8	100	0	50	52	0	0	48	1.00
16194--16738	271	2.0	271	92	1	914	36	12	16	33	1.87
24958--25030	29	2.6	29	95	2	130	16	8	23	52	1.70
25254--25316	17	3.4	17	69	23	54	19	6	12	61	1.51
25355--25439	31	2.8	31	92	1	136	47	7	11	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30988--31057	35	2.0	35	100	0	140	22	22	17	37	1.94
34529--34566	19	2.0	19	100	0	76	31	36	21	10	1.87
34581--34651	32	2.2	32	92	0	115	30	30	29	8	1.87
34639--34733	29	3.3	29	95	0	163	13	30	32	23	1.93
34758--34875	50	2.4	50	90	7	170	21	38	18	22	1.94
35090--35128	16	2.3	18	86	8	55	38	0	5	56	1.22
35232--35322	45	2.0	47	85	12	127	40	0	10	48	1.38
35360--35436	34	2.3	33	82	10	95	41	0	11	46	1.40
35482--35528	16	3.0	16	84	9	53	29	0	10	59	1.31
35503--35533	15	2.1	14	94	5	53	38	0	6	54	1.26
37682--37714	17	1.9	17	100	0	66	48	9	6	36	1.60
37681--37731	14	3.4	14	82	12	57	45	7	7	39	1.62
37709--37752	21	2.1	21	86	0	61	45	4	9	40	1.56
37706--37795	32	2.7	32	86	5	108	48	7	4	38	1.52
37719--37752	11	3.2	11	83	8	52	47	5	8	38	1.59
37699--37821	14	9.1	14	73	16	66	46	8	4	39	1.57
37752--37896	72	1.9	76	87	9	219	45	11	1	41	1.49
37778--38020	98	2.5	98	97	1	461	43	11	2	43	1.51
37778--38392	124	5.0	121	89	7	503	43	10	2	43	1.51
37951--38388	26	17.6	24	71	23	236	43	10	2	44	1.51
37778--38366	222	2.7	222	99	0	1160	43	10	2	43	1.51
37977--38242	98	2.7	98	97	1	489	43	10	2	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38281--38323	20	2.2	19	83	4	50	46	2	2	48	1.27
37951--38447	124	4.0	124	92	4	715	43	10	2	43	1.51
41284--41344	26	2.4	24	76	15	59	42	1	6	49	1.38
41579--41647	18	3.8	18	74	9	68	52	10	0	37	1.36
41707--41733	14	1.9	14	100	0	54	74	14	3	7	1.18
41704--41736	17	1.9	17	88	11	50	72	15	3	9	1.21
42135--42183	21	2.3	21	82	3	62	51	18	0	30	1.47
42616--42681	34	1.9	34	93	0	114	25	16	28	28	1.97
42718--42742	12	2.1	12	100	0	50	24	60	0	16	1.36
43007--43063	13	4.1	13	83	16	78	29	47	22	0	1.52
43010--43067	30	1.9	30	100	0	116	29	48	22	0	1.51
43081--43224	29	5.0	29	97	1	263	18	27	38	15	1.91
43809--43843	14	2.5	14	95	0	61	14	8	14	62	1.53
44056--44101	14	3.3	14	81	0	56	8	23	19	47	1.77
46766--46823	28	2.1	27	84	9	73	62	1	0	36	1.06
57496--57540	21	2.1	21	87	0	63	28	4	8	57	1.48
61583--61662	34	2.4	33	81	8	92	60	1	0	38	1.05
61616--61693	35	2.3	34	80	10	88	64	5	0	30	1.15
64865--65000	63	2.1	65	82	6	179	50	12	8	28	1.70
69387--69607	120	1.8	119	80	4	266	32	14	7	46	1.71
72763--72792	2	15.0	2	92	0	51	50	3	46	0	1.18
74410--74458	22	2.2	21	79	10	53	48	4	2	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74464--74506	20	2.2	20	84	8	54	41	2	2	53	1.26
74424--74523	53	1.9	54	86	10	145	47	2	1	50	1.19
89558--89582	2	12.5	2	100	0	50	0	0	48	52	1.00
100225--100271	20	2.4	20	78	3	60	34	23	27	14	1.94
102149--102354	80	2.5	80	89	4	308	35	20	16	26	1.95
106429--106508	29	2.8	28	72	12	81	42	6	3	47	1.46
106725--107057	165	2.0	165	93	6	577	33	10	19	36	1.86
116380--116423	21	2.1	21	86	0	61	25	27	22	25	2.00
116716--116745	11	2.7	11	89	0	51	36	13	3	46	1.60
116953--117002	25	2.0	25	100	0	100	60	20	12	8	1.57
129236--129272	14	2.6	15	87	8	51	35	5	0	59	1.20
140906--140992	43	2.0	43	100	0	174	19	25	16	39	1.92

Tables:   1

The End!