genome.fa.s162.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000162.1 Hibiscus syriacus cultivar Beakdansim tig00000286_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128669

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247--417	85	2.0	84	86	5	238	42	19	8	30	1.80
2340--2380	20	2.0	20	95	0	73	12	19	31	36	1.89
2345--2391	20	2.3	20	81	0	58	14	21	27	36	1.93
3173--3255	3	28.0	3	87	2	69	32	55	0	12	1.37
3158--3252	24	4.0	23	87	5	118	32	52	1	13	1.48
8337--8746	201	2.0	202	89	2	619	24	18	6	50	1.71
8780--8845	17	3.9	16	75	13	53	22	1	3	72	1.06
9099--9196	45	2.2	45	92	0	160	51	3	9	36	1.50
10723--10758	17	2.1	17	100	0	72	33	36	5	25	1.79
11407--11453	24	2.0	24	86	0	67	31	21	12	34	1.91
12304--12344	21	2.0	21	90	0	64	51	21	14	12	1.75
12799--12856	22	2.6	22	86	0	89	17	17	44	20	1.86
13016--13087	20	3.6	20	69	14	58	26	18	23	31	1.97
13113--13149	19	1.9	19	94	0	65	21	16	29	32	1.95
15885--16123	80	3.0	81	83	6	288	35	14	15	34	1.88
15883--16147	81	3.3	80	80	5	284	36	13	16	33	1.87
19129--19267	40	3.2	40	65	29	104	38	5	16	38	1.73
19096--19279	91	2.0	91	98	0	359	36	5	16	40	1.74
20986--21016	7	4.6	7	92	8	55	61	0	0	38	0.96
20987--21015	13	2.2	13	100	0	58	58	0	0	41	0.98
21179--21223	16	2.7	17	83	16	51	75	0	0	24	0.80
21176--21223	19	2.5	19	80	10	53	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23145--24340	84	14.5	84	83	4	1284	24	17	22	35	1.95
23185--24334	164	7.0	164	86	2	1354	24	17	22	35	1.95
25186--25361	88	2.0	88	82	4	212	31	21	15	31	1.94
29020--29062	20	2.2	19	88	12	61	76	0	2	20	0.89
30128--30171	21	2.0	22	83	12	56	20	25	0	54	1.45
35718--35785	29	2.3	29	87	7	93	39	22	5	32	1.78
36377--36441	29	2.2	29	94	0	112	35	9	10	44	1.71
36517--36580	29	2.2	29	91	0	101	34	10	9	45	1.72
36654--36730	29	2.6	29	81	2	100	33	7	12	45	1.72
36378--36755	139	2.7	139	88	1	555	36	11	11	41	1.77
36378--36777	137	2.9	137	80	11	460	36	11	11	40	1.77
38413--38447	17	2.1	17	100	0	70	22	17	25	34	1.96
40236--40265	14	2.1	14	100	0	60	26	0	20	53	1.46
42813--42862	20	2.5	20	90	3	75	62	10	2	26	1.38
46819--46850	14	2.3	14	100	0	64	65	12	6	15	1.44
48590--48666	20	3.8	20	74	3	73	33	23	16	25	1.96
48589--48666	41	1.9	41	84	10	106	33	24	16	25	1.96
48683--48801	21	5.7	21	73	13	84	31	24	16	26	1.96
50115--50154	12	3.6	12	83	9	50	75	0	25	0	0.81
66897--67027	60	2.3	55	85	7	165	12	11	17	58	1.62
69361--69385	9	2.8	9	100	0	50	44	0	36	20	1.52
74711--74744	12	2.9	12	86	4	52	23	29	29	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89121--89224	29	3.6	29	82	0	118	38	19	23	19	1.93
89176--89258	29	2.9	29	82	8	98	44	16	18	20	1.87
96648--96679	2	16.0	2	100	0	64	50	0	0	50	1.00
98699--98736	20	1.9	19	89	5	58	36	7	28	26	1.84
98886--98965	38	2.1	39	81	9	94	48	5	1	45	1.32
104835--104866	15	2.1	15	94	0	55	25	43	0	31	1.55
108119--108566	229	2.0	226	94	1	788	45	8	7	39	1.61
108632--108678	20	2.4	19	89	10	76	55	10	17	17	1.69
108799--108845	20	2.4	19	79	10	58	55	8	17	19	1.67
111146--111211	33	2.0	33	87	0	96	28	1	45	24	1.62
113001--113063	19	3.4	19	95	2	110	31	3	9	55	1.48
113146--113963	200	4.1	199	94	2	1411	36	14	15	32	1.88
115421--115482	18	3.4	18	88	0	88	38	6	33	20	1.79
115421--115482	6	10.3	6	83	0	61	38	6	33	20	1.79
115436--115486	3	17.0	3	83	0	66	37	3	33	25	1.74
115424--115486	12	5.2	12	90	0	81	36	6	33	23	1.80
116845--117878	183	5.7	184	95	3	1824	34	14	15	34	1.89
116845--117878	365	2.8	366	95	2	1834	34	14	15	34	1.89
120353--120410	23	2.5	23	91	0	89	36	6	18	37	1.78
120353--120420	23	3.0	23	86	4	84	35	5	19	39	1.76
120798--120849	21	2.5	21	87	6	70	36	1	19	42	1.62
120847--120885	20	2.0	20	89	0	60	25	15	10	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126405--126482	35	2.2	35	81	6	95	61	16	3	17	1.49

Tables:   1

The End!