genome.fa.s1620.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001620.1 Hibiscus syriacus cultivar Beakdansim tig00003219_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97355

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8201--8246	22	2.1	22	88	4	67	39	15	0	45	1.46
22540--22642	22	4.9	22	83	9	142	27	31	24	17	1.97
22528--22620	40	2.3	40	92	0	150	27	32	23	16	1.96
23166--23328	63	2.6	63	84	1	191	25	20	21	31	1.98
27412--27472	31	2.0	31	93	3	106	34	6	16	42	1.74
27652--27693	21	2.0	21	95	0	75	23	21	28	26	1.99
27977--28046	34	2.1	32	86	5	95	31	15	30	22	1.95
28907--28954	19	2.5	19	83	12	62	54	4	12	29	1.56
30008--30050	21	2.0	21	86	0	59	30	27	25	16	1.97
30030--30181	68	2.3	67	89	1	223	28	27	26	17	1.97
30540--30599	30	2.0	31	86	3	86	36	6	21	35	1.80
30819--30885	22	3.0	22	100	0	134	19	26	26	26	1.99
36914--36956	21	2.0	21	86	0	59	30	27	25	16	1.97
36936--37086	67	2.2	68	85	2	198	29	27	25	17	1.97
37445--37504	30	2.0	31	86	3	86	36	6	21	35	1.80
37724--37790	22	3.0	22	100	0	134	19	26	26	26	1.99
39262--39351	31	3.0	31	96	3	166	33	5	17	43	1.73
39419--39460	21	2.0	21	95	0	75	23	21	28	26	1.99
39743--39812	34	2.1	32	84	5	86	32	15	27	24	1.95
43195--43241	23	2.1	21	84	7	58	40	6	4	48	1.48
48072--48097	5	5.2	5	100	0	52	76	0	23	0	0.78
57048--57540	229	2.1	229	93	1	853	44	7	8	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57610--58083	181	2.6	182	88	1	684	42	13	16	27	1.86
58004--58050	20	2.4	19	82	10	67	53	10	17	19	1.72
58013--58055	20	2.3	19	88	11	63	51	11	16	20	1.75
60250--60293	21	2.1	21	91	0	70	40	11	31	15	1.83
60327--60392	33	2.0	33	85	5	89	28	0	45	25	1.54
62176--62224	19	2.6	19	93	0	80	30	2	10	57	1.43
62343--62914	198	2.9	198	97	0	1072	36	15	17	31	1.91
64378--64472	12	7.9	12	86	0	91	35	7	32	24	1.83
64375--64436	18	3.4	18	76	8	72	38	9	32	19	1.84
64391--64473	3	27.7	3	80	0	94	36	6	32	25	1.80
64378--64472	36	2.6	36	86	0	118	35	7	32	24	1.83
65656--65689	16	2.1	16	88	0	50	47	8	20	23	1.78
66027--66089	23	2.7	23	95	0	108	36	4	19	39	1.72
66456--66528	23	3.2	23	88	0	101	34	4	21	39	1.73
66903--67395	183	2.7	182	94	1	853	34	15	16	33	1.90
69863--69927	25	2.6	25	80	0	85	35	9	13	41	1.77
70173--70220	23	2.1	23	84	7	62	37	6	14	41	1.71
70189--70235	25	2.0	23	83	8	58	40	4	14	40	1.66
70618--70667	25	2.0	25	96	0	91	26	8	22	44	1.80
71052--71088	18	2.1	18	89	0	56	32	5	10	51	1.60
71044--71090	24	2.0	24	86	0	67	34	4	14	46	1.64
71357--71440	39	2.2	39	95	0	150	48	20	14	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71856--71925	21	3.2	23	82	10	83	32	4	22	40	1.74
72281--72343	23	2.7	23	95	0	108	36	4	19	39	1.72
71659--74096	428	5.5	430	77	13	2316	40	7	12	38	1.73
72712--72853	23	6.2	23	94	0	230	34	6	21	37	1.79
73207--73279	23	3.2	23	88	0	110	34	5	20	39	1.76
73207--73304	46	2.1	45	81	7	108	33	7	17	41	1.77
72781--74096	426	3.0	426	87	7	1705	39	7	13	39	1.73
73634--73747	23	5.0	23	94	0	201	34	6	21	37	1.79
71856--74096	926	2.5	910	92	5	3706	39	7	13	39	1.73
73215--74110	470	1.9	463	94	2	1539	39	7	13	39	1.74
75281--75372	2	46.5	2	97	2	177	50	0	0	50	1.00
75501--75555	24	2.3	23	78	9	56	60	3	7	29	1.41
76912--76973	3	20.3	3	90	3	97	62	0	3	33	1.11
80931--80960	15	2.0	15	93	0	51	13	3	6	76	1.11
82701--82803	34	2.9	34	85	8	118	33	21	30	14	1.93

Tables:   1

The End!