genome.fa.s1621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001621.1 Hibiscus syriacus cultivar Beakdansim tig00003222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84792

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3037--3086	24	2.0	25	96	3	93	30	12	28	30	1.92
4299--4328	2	15.0	2	100	0	60	50	0	0	50	1.00
5503--5569	32	2.1	32	85	0	89	49	13	1	35	1.51
5834--5858	2	12.5	2	100	0	50	48	0	0	52	1.00
6000--6024	13	1.9	13	100	0	50	32	8	4	56	1.47
9989--10019	15	2.0	16	93	6	55	51	0	6	41	1.27
19946--19996	25	2.0	25	96	0	93	25	0	25	49	1.51
21685--21709	13	1.9	13	100	0	50	16	8	40	36	1.77
22196--22272	37	2.1	36	83	9	93	46	1	3	48	1.28
22418--22455	20	1.9	20	88	0	58	26	26	5	42	1.76
26552--26999	229	2.0	226	94	2	790	45	7	7	39	1.61
27065--27110	20	2.3	19	89	10	74	54	10	17	17	1.70
27232--27278	20	2.3	20	96	0	85	57	8	17	17	1.63
27236--27283	20	2.6	18	87	12	62	58	8	14	18	1.61
29512--29576	21	3.1	21	80	6	69	40	15	29	15	1.88
29610--29675	33	2.0	33	90	0	105	28	0	48	22	1.51
31467--31515	19	2.6	19	93	0	80	30	2	10	57	1.43
31593--33319	198	8.8	198	97	2	3233	36	16	16	31	1.91
31593--33319	395	4.4	398	96	3	3241	36	16	16	31	1.91
32019--33319	197	6.6	198	99	0	2538	36	16	16	31	1.91
34793--34867	3	25.0	3	79	0	78	34	5	34	25	1.79
36065--36576	183	2.8	183	94	1	884	36	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36572--36614	22	1.9	23	85	4	61	30	11	11	46	1.76
39734--39797	23	2.8	23	87	0	92	35	6	20	37	1.78
39734--39806	23	3.2	23	82	7	85	34	5	20	39	1.76
40102--40147	22	2.1	22	84	8	58	41	10	8	39	1.71
40165--40228	23	2.8	23	87	0	92	35	6	20	37	1.78
40165--40237	23	3.2	23	82	7	85	34	5	20	39	1.76
39637--42457	431	6.4	431	74	14	2531	38	10	13	37	1.79
40506--40556	25	2.0	25	92	0	84	33	7	19	39	1.81
40805--40841	18	2.1	18	89	0	56	32	5	10	51	1.60
40797--40843	24	2.0	24	86	0	67	34	4	14	46	1.64
41544--41605	22	2.8	22	90	2	88	37	6	19	37	1.78
41544--41615	23	3.2	22	88	4	90	36	5	19	38	1.75
41968--42030	23	2.7	23	90	0	90	36	6	19	38	1.77
41968--42040	23	3.2	23	86	3	85	35	5	19	39	1.75
41170--42457	424	3.0	430	97	1	2472	39	8	13	38	1.74
42395--42459	23	2.8	23	90	0	94	35	7	18	38	1.80
42663--42699	18	2.1	18	89	0	56	32	5	10	51	1.60
42655--42701	24	2.0	24	86	0	67	34	4	14	46	1.64
42957--43081	39	3.2	39	95	2	225	48	20	13	17	1.81
42961--43078	38	3.1	38	95	2	209	48	20	14	16	1.81
43482--43545	23	2.8	23	87	0	92	35	6	20	37	1.78
43482--43554	23	3.2	23	82	7	85	34	5	20	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44742--44794	21	2.5	21	81	6	63	41	9	1	47	1.47
52466--52506	20	2.0	21	86	13	59	48	9	0	41	1.36
54166--54191	13	2.0	13	100	0	52	23	0	15	61	1.33
59118--59159	21	2.0	22	85	4	59	57	0	0	42	0.99
59478--59559	41	2.0	41	92	4	139	30	28	18	23	1.97
61815--61992	66	2.6	67	90	4	261	11	40	17	29	1.86
67608--67749	60	2.4	60	78	0	149	40	7	21	30	1.80
76786--76859	35	2.1	36	85	7	98	45	1	4	48	1.29
79405--79793	184	2.1	185	91	2	624	42	3	8	45	1.50

Tables:   1

The End!