Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001622.1 Hibiscus syriacus cultivar Beakdansim tig00003223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83462

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
966--1038
34
2.1
34
92
0
119
35
16
12
35
1.86
2079--2114
18
2.1
17
90
10
56
77
0
13
8
0.98
5438--5466
14
2.0
15
93
6
51
41
0
3
55
1.17
5465--5680
113
1.9
111
86
1
306
32
7
13
45
1.72
5734--5762
2
14.5
2
100
0
58
51
0
0
48
1.00
5875--5908
17
1.9
18
88
5
52
73
0
5
20
1.04
7215--7255
21
1.9
22
95
5
75
36
19
19
24
1.95
25518--25545
2
14.0
2
100
0
56
50
0
0
50
1.00
30490--30545
17
3.4
16
78
11
51
30
1
3
64
1.21
32262--32301
21
1.9
21
94
0
71
45
12
22
20
1.84
32880--32938
26
2.4
25
83
8
75
54
0
44
1
1.10
49245--49411
92
1.8
91
89
1
262
44
7
10
37
1.67
52200--52312
35
3.2
35
80
0
109
41
17
0
39
1.56
52315--52384
35
2.0
35
83
5
88
30
0
24
45
1.53
53445--53606
64
2.5
66
79
7
174
32
20
20
26
1.97
54370--54417
19
2.5
19
80
6
53
39
6
18
35
1.76
54607--54787
32
5.7
31
80
8
222
32
17
18
32
1.94
54587--54804
63
3.5
63
96
2
411
32
16
19
31
1.94
54587--54843
31
8.2
31
76
10
238
31
17
19
31
1.95
59463--59643
32
5.7
31
78
8
204
31
16
19
33
1.93
59443--59699
31
8.2
31
73
8
209
31
16
19
32
1.94
59443--59660
63
3.5
63
94
0
382
31
15
19
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64034--64072
3
13.0
3
100
0
78
33
0
0
66
0.92
65779--65840
2
31.0
2
96
0
115
48
0
0
51
1.00
74624--74660
19
1.9
19
88
0
56
13
32
29
24
1.93
75389--75522
38
3.5
38
86
4
180
25
21
26
26
2.00
75397--75465
21
3.5
21
64
22
58
23
23
23
30
1.99
75418--75482
17
3.6
17
66
22
51
20
23
29
27
1.98
81424--81557
38
3.5
38
84
0
169
26
21
24
26
1.99

Tables:   1

The End!