genome.fa.s1623.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001623.1 Hibiscus syriacus cultivar Beakdansim tig00003227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80616

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088--1179	35	2.6	36	78	11	100	21	19	18	40	1.92
1122--1190	35	2.0	35	91	5	113	23	21	14	40	1.90
1215--1325	35	3.0	37	85	10	165	27	18	14	38	1.90
1231--1480	101	2.5	101	83	5	326	28	19	12	39	1.89
1384--1550	67	2.5	66	85	4	221	30	21	10	37	1.87
2194--2703	207	2.5	203	84	6	668	33	25	17	23	1.96
2182--2694	105	5.0	104	87	5	648	34	25	17	22	1.96
3242--3375	37	3.8	35	83	9	157	41	14	14	29	1.86
3514--3539	9	2.9	9	100	0	52	7	0	0	92	0.39
4008--4060	22	2.3	23	78	18	58	28	5	0	66	1.15
4078--4122	10	4.7	10	84	15	60	20	0	0	80	0.72
11092--11146	24	2.3	24	100	0	110	38	0	3	58	1.16
11956--11999	20	2.2	20	100	0	88	50	9	4	36	1.55
12425--12483	29	2.0	29	96	0	109	22	27	35	15	1.94
13339--13407	26	2.7	26	72	14	72	49	2	1	46	1.25
13399--13742	183	1.9	182	92	3	575	41	2	9	46	1.50
16349--16393	20	2.2	20	84	0	54	35	13	22	28	1.92
17436--17484	21	2.3	21	92	0	80	36	12	20	30	1.89
23323--23476	83	1.9	80	89	6	236	45	6	5	42	1.54
29148--29369	36	5.9	35	77	12	176	47	4	7	40	1.51
29148--29369	38	5.9	35	79	12	203	47	4	7	40	1.51
29172--29366	74	2.5	74	81	7	221	48	3	7	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29143--29499	38	9.7	37	72	17	191	44	3	7	44	1.49
29265--29499	36	6.5	36	70	22	129	44	2	6	45	1.44
38224--38269	23	2.1	23	84	8	60	30	6	2	60	1.34
39349--39373	2	12.5	2	100	0	50	0	48	0	52	1.00
39149--39563	214	1.9	214	99	0	821	23	24	15	36	1.94
56235--56315	31	2.6	31	90	5	128	38	11	17	33	1.85
56259--56326	31	2.2	31	86	0	91	39	14	13	32	1.85
58471--58495	2	12.5	2	100	0	50	52	0	48	0	1.00
60880--60959	40	1.9	41	85	7	108	37	7	13	41	1.73
62290--62327	19	2.0	19	94	0	67	0	7	36	55	1.29
62297--62342	23	2.0	24	86	4	67	0	10	36	52	1.37
65576--65629	23	2.6	20	78	21	58	25	0	3	70	1.04
65599--65628	14	2.1	15	93	6	53	23	0	0	76	0.78
68305--68344	21	1.9	19	85	14	53	80	5	0	15	0.88
69277--69301	6	4.2	6	100	0	50	32	32	0	36	1.58

Tables:   1

The End!