genome.fa.s1625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001625.1 Hibiscus syriacus cultivar Beakdansim tig00003234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99682

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5317--5352	2	18.5	2	94	5	65	47	0	0	52	1.00
7474--7518	21	2.3	21	85	11	60	0	24	13	62	1.31
10931--10970	19	2.0	20	95	4	73	62	0	15	22	1.32
16176--16211	3	12.7	3	88	11	58	0	27	0	72	0.85
19940--19993	26	2.0	28	82	7	67	42	7	12	37	1.72
20112--20196	17	5.2	17	71	16	72	55	0	0	44	0.99
20155--20196	14	2.9	15	78	7	50	50	0	0	50	1.00
20324--20358	18	1.9	18	94	0	61	57	8	8	25	1.57
21058--21107	24	2.1	24	85	7	66	50	2	0	48	1.12
21156--21194	16	2.3	17	86	8	53	48	0	17	33	1.48
21773--21843	24	2.9	24	93	2	115	26	15	15	42	1.87
22714--23269	287	1.9	284	82	3	697	35	14	13	35	1.86
23532--23577	2	23.0	2	100	0	92	50	0	0	50	1.00
28448--28489	21	2.1	20	82	8	50	52	7	0	40	1.29
29790--29823	17	2.0	17	94	0	59	61	5	0	32	1.20
31373--31405	15	2.1	16	94	5	59	51	18	24	6	1.68
37045--37070	2	13.0	2	100	0	52	50	0	0	50	1.00
37941--37982	20	2.1	21	86	8	61	38	0	11	50	1.40
41969--41995	14	1.9	14	100	0	54	18	59	0	22	1.38
43564--43636	30	2.4	30	95	0	128	24	8	31	35	1.85
46170--46202	12	2.6	13	85	9	50	69	6	0	24	1.10
51365--51427	31	2.0	31	84	6	83	52	1	3	42	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53363--53444	33	2.5	33	95	0	146	35	12	0	52	1.39
56155--56219	31	2.1	31	82	5	78	20	20	27	32	1.97
57173--57235	31	2.0	31	100	0	126	34	0	44	20	1.52
60421--60468	23	2.1	23	88	0	69	35	12	18	33	1.89
60850--60901	23	2.3	22	90	6	77	44	19	1	34	1.62
60860--60922	23	2.7	23	90	0	90	38	19	6	36	1.77
61326--61408	38	2.2	39	93	2	141	16	14	20	48	1.81
61664--61717	24	2.2	25	83	9	76	50	14	5	29	1.66
61993--62043	25	2.0	25	92	0	84	39	19	7	33	1.81
62311--62382	23	3.2	22	86	4	90	38	20	5	34	1.76
62847--63190	184	1.9	184	93	0	589	33	16	13	36	1.89
64616--64696	3	27.0	3	75	0	72	23	34	6	35	1.80
64620--64708	12	7.4	12	84	0	88	21	34	7	35	1.82
64620--64711	18	5.1	18	77	0	76	20	34	7	36	1.81
64632--64708	36	2.1	36	90	0	118	20	35	9	35	1.85
64620--64711	6	15.3	6	79	0	67	20	34	7	36	1.81
66171--67329	198	5.8	199	97	0	2180	31	15	15	37	1.90
67457--67505	19	2.6	19	93	0	80	57	10	2	30	1.43
69292--69357	33	2.0	33	90	0	105	22	48	0	28	1.51
69390--69454	21	3.1	21	80	6	69	15	29	15	40	1.88
71681--71723	20	2.3	18	82	17	61	18	16	11	53	1.72
71686--71732	20	2.3	20	89	10	78	17	17	10	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71854--71899	20	2.3	20	89	10	76	17	17	10	54	1.70
76122--76162	21	2.0	21	95	0	73	24	39	24	12	1.89
81967--82044	20	3.8	20	75	11	70	24	34	25	15	1.95
81968--82045	41	1.9	41	82	10	97	24	34	24	16	1.95
94756--94821	25	2.6	26	92	7	118	37	18	6	37	1.75

Tables:   1

The End!