Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001626.1 Hibiscus syriacus cultivar Beakdansim tig00003235_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73851

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
943--981
15
2.6
15
100
0
78
30
5
15
48
1.66
1955--2000
20
2.3
20
85
7
58
69
4
6
19
1.28
2954--2978
2
12.5
2
100
0
50
48
0
0
52
1.00
7845--7904
25
2.4
24
78
8
75
40
5
0
55
1.22
13658--13688
15
2.1
15
100
0
62
29
0
19
51
1.47
13769--13807
17
2.3
17
100
0
78
33
25
15
25
1.95
16688--16739
24
2.2
24
89
0
77
21
26
44
7
1.79
16722--16786
23
2.8
23
88
0
94
20
30
38
10
1.86
19381--19419
13
3.0
13
100
0
78
38
15
15
30
1.88
21147--21198
6
8.7
6
85
8
61
82
3
0
13
0.80
21147--21198
17
2.9
19
77
13
65
82
3
0
13
0.80
21148--21207
23
2.7
23
86
2
77
81
3
1
13
0.89
21156--21207
16
3.5
14
79
15
52
82
3
1
11
0.88
21147--21207
29
2.1
29
87
9
88
81
3
1
13
0.88
21274--21419
33
4.4
31
80
13
116
42
6
4
45
1.52
21221--21608
37
10.8
35
72
16
203
44
7
5
42
1.55
21494--21519
13
2.0
13
100
0
52
46
7
7
38
1.61
31741--31783
21
2.0
21
100
0
86
23
27
23
25
2.00
38566--38735
77
2.2
77
85
4
227
25
32
20
21
1.97
43028--43053
2
13.0
2
100
0
52
50
0
0
50
1.00
43697--43752
25
2.2
26
84
9
71
50
1
10
37
1.48
44237--44328
40
2.4
39
87
7
125
51
7
15
26
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45612--45687
36
2.1
36
85
7
100
47
1
3
47
1.29
50048--50106
19
3.1
18
80
9
64
44
0
1
54
1.10
51086--51160
33
2.3
33
88
4
107
26
24
38
10
1.88
51164--51219
29
1.9
29
96
0
103
19
30
37
12
1.89
51278--51334
29
2.0
29
89
6
89
22
31
29
15
1.95
63427--63460
17
2.0
17
88
0
50
41
0
0
58
0.98
68351--68434
29
2.8
30
85
5
109
51
0
9
39
1.35
68357--68434
15
5.3
15
69
9
61
48
0
10
41
1.37
68448--68482
14
2.5
14
90
0
52
40
0
5
54
1.24
68664--68700
19
2.0
19
89
5
58
40
0
0
59
0.97
68797--68846
23
2.2
23
81
0
55
46
2
2
50
1.24
68896--68951
25
2.2
25
84
12
69
55
1
0
42
1.10
68836--69021
26
7.2
26
70
20
90
50
1
1
46
1.18
68970--69021
21
2.7
20
85
8
63
51
0
0
48
1.00
68957--69074
24
4.7
23
70
22
71
48
0
2
49
1.15
69235--69329
42
2.3
42
92
0
154
47
21
15
15
1.82
70855--70890
18
2.0
18
88
0
54
38
0
8
52
1.32
71845--71887
14
3.0
15
80
6
54
72
2
0
25
0.97
72963--73003
20
2.0
20
90
0
64
17
41
26
14
1.88

Tables:   1

The End!