Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001627.1 Hibiscus syriacus cultivar Beakdansim tig00003238_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74638

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2037--2088
23
2.3
23
83
6
61
57
17
0
25
1.40
5736--5770
17
2.1
17
100
0
70
42
28
5
22
1.76
19267--19321
25
2.1
26
83
12
69
27
3
1
67
1.17
20659--20691
15
2.2
15
89
10
50
57
6
0
36
1.23
22162--22200
18
2.0
20
85
9
55
64
0
2
33
1.08
23606--23687
41
2.0
41
97
0
155
28
12
25
34
1.92
24170--24195
13
2.0
13
100
0
52
46
30
7
15
1.74
27871--27914
17
2.6
17
85
0
61
13
13
11
61
1.57
28632--28739
54
2.0
54
92
0
180
37
27
12
23
1.90
33862--33890
2
14.5
2
100
0
58
48
0
0
51
1.00
34628--34670
22
1.9
23
86
13
63
48
2
6
41
1.43
37483--37508
2
13.0
2
100
0
52
50
0
0
50
1.00
39853--39883
2
15.5
2
100
0
62
51
0
0
48
1.00
53121--53163
16
2.7
16
79
10
52
44
2
0
53
1.13
53128--53163
17
2.2
16
90
5
54
41
2
0
55
1.14
53432--53470
20
2.1
18
85
9
51
43
5
5
46
1.48
54142--54199
20
2.9
20
94
0
98
24
22
10
43
1.84
62039--62081
23
2.0
21
81
9
50
34
2
2
60
1.22
66678--66704
2
13.5
2
100
0
54
51
0
48
0
1.00

Tables:   1

The End!