Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001628.1 Hibiscus syriacus cultivar Beakdansim tig00003241_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110542

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8385--8426
22
1.9
22
90
0
66
14
33
26
26
1.94
9153--9249
38
2.6
38
91
0
149
24
21
27
25
1.99
11700--11738
2
19.5
2
100
0
78
48
0
0
51
1.00
15300--15430
38
3.4
38
83
4
165
25
21
25
26
1.99
18087--18283
97
2.0
97
95
0
349
43
11
10
34
1.76
21573--21643
33
2.2
33
89
0
106
18
28
7
46
1.75
27815--27900
32
2.7
32
83
1
102
34
11
15
38
1.83
42900--43028
6
20.8
6
80
12
73
25
0
73
0
0.88
42899--42986
32
2.8
32
86
6
124
31
0
67
1
0.99
42968--43024
1
57.0
1
75
0
51
12
0
87
0
0.54
42964--43026
18
3.6
18
87
12
96
14
0
85
0
0.59
43149--43268
18
6.8
18
75
15
92
27
0
69
3
1.04
43142--43294
4
40.2
4
74
17
112
28
0
69
2
1.02
43136--43297
22
7.2
22
75
12
125
29
0
68
2
1.02
43135--43297
16
10.4
16
76
10
126
28
0
68
2
1.02
42900--43401
266
1.9
268
88
4
764
25
7
48
19
1.75
48297--48329
12
2.8
12
95
0
57
27
24
33
15
1.95
50910--50993
44
1.9
44
95
0
150
55
4
21
17
1.60
55704--55741
19
2.0
19
85
10
51
34
0
2
63
1.09
62008--62064
22
2.6
21
76
17
62
42
8
1
47
1.45
63292--63329
2
19.0
2
100
0
76
50
0
0
50
1.00
66512--66575
2
32.0
2
100
0
128
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67785--67814
2
15.0
2
92
0
51
46
0
3
50
1.18
75459--75484
2
13.0
2
100
0
52
50
50
0
0
1.00
77845--77893
22
2.2
22
78
7
55
59
2
0
38
1.09
98316--98364
15
3.3
15
79
0
53
14
32
40
12
1.83
102815--102870
6
9.2
6
81
11
51
35
39
21
3
1.71
107517--107555
20
2.0
20
90
5
62
5
28
15
51
1.64

Tables:   1

The End!