Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001629.1 Hibiscus syriacus cultivar Beakdansim tig00003243_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77033

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1408--1454
19
2.4
20
89
3
78
53
8
14
23
1.69
4039--4133
45
2.1
46
84
2
120
41
10
14
33
1.81
13574--13604
16
2.0
16
93
6
55
45
0
3
51
1.17
13574--13616
17
2.6
16
77
7
50
44
0
2
53
1.13
14465--14534
28
2.5
28
95
0
122
41
30
11
17
1.84
26100--26218
38
3.2
35
82
7
121
47
5
5
41
1.52
26100--26220
36
3.3
35
76
15
109
47
5
5
41
1.51
29577--29622
19
2.4
19
100
0
92
10
10
10
67
1.43
33029--33479
84
5.4
84
81
5
515
29
25
21
24
1.99
33029--33501
165
2.9
161
81
6
538
29
24
20
25
1.99
33051--33569
249
2.1
247
87
4
713
30
23
20
24
1.98
34118--34164
2
24.0
2
91
4
69
51
4
0
44
1.21
34149--34249
38
2.8
36
80
6
114
46
4
6
41
1.52
34151--34402
36
6.9
36
73
12
158
47
4
6
41
1.50
34210--34414
106
1.9
106
81
7
247
48
5
5
40
1.49
34151--34409
72
3.6
70
74
15
208
47
5
6
41
1.50
34375--34431
29
2.0
29
85
0
78
43
5
7
43
1.54
34341--34473
66
2.1
61
83
9
160
47
4
5
42
1.46
34519--34563
14
3.1
14
87
3
63
22
2
0
75
0.91
35425--35455
13
2.5
12
90
10
53
9
38
51
0
1.35
36934--36976
19
2.5
17
75
17
52
39
0
0
60
0.97
38577--38666
42
2.1
43
85
2
119
22
15
8
53
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40389--40468
30
2.6
30
82
4
88
31
17
17
33
1.93
59063--59105
2
21.5
2
100
0
86
51
48
0
0
1.00
59728--59772
22
2.0
22
95
0
81
22
24
31
22
1.99
61950--61987
20
1.9
20
100
0
76
10
31
34
23
1.89
62334--62362
15
2.0
15
93
6
51
58
13
13
13
1.63
66565--66626
23
2.7
23
79
0
79
33
24
24
17
1.96
66964--66994
12
2.6
12
100
0
62
35
25
12
25
1.92
68168--68249
35
2.3
35
97
0
155
20
28
21
29
1.98

Tables:   1

The End!