genome.fa.s1630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001630.1 Hibiscus syriacus cultivar Beakdansim tig00003244_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75498

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081--2417	448	3.0	446	93	4	2325	28	21	14	36	1.92
4219--4251	16	2.1	16	94	0	57	48	15	0	36	1.45
6313--6351	20	2.0	20	84	0	51	23	7	23	46	1.78
6550--6589	20	2.0	20	90	0	62	20	25	35	20	1.96
12835--12874	21	1.9	21	94	0	71	12	22	37	27	1.90
25237--25363	59	2.2	59	82	2	148	29	19	23	27	1.98
25474--25745	45	6.0	45	94	0	463	40	6	22	31	1.79
25630--25704	24	3.2	24	63	30	63	45	4	18	32	1.68
26148--26188	21	2.0	21	95	0	73	31	21	19	26	1.97
28575--28701	12	10.9	12	71	18	81	79	2	14	3	0.97
28574--28686	14	8.2	13	70	17	68	79	2	14	3	0.97
28577--28701	10	11.9	10	79	14	73	79	2	14	4	0.98
28574--28701	22	5.5	24	70	18	101	79	2	14	3	0.97
28577--28701	46	2.7	45	81	12	130	79	2	14	4	0.98
34291--34495	55	3.7	55	72	5	155	40	16	8	34	1.78
34228--34769	56	9.6	56	73	8	293	40	16	9	33	1.82
34305--34768	113	4.1	114	76	10	339	40	16	9	32	1.82
34384--34769	57	6.9	55	70	12	180	40	16	10	32	1.82
35073--35254	56	3.2	57	79	4	183	43	18	6	31	1.74
35400--36734	56	23.9	56	72	7	811	37	15	11	36	1.83
37201--37568	56	6.6	58	72	9	184	36	16	12	35	1.86
38523--38648	55	2.3	54	78	6	130	37	19	8	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39026--39151	56	2.2	56	81	5	148	38	15	6	38	1.73
39249--40725	56	26.7	56	68	9	589	38	16	9	35	1.81
39961--40306	113	3.1	111	75	8	256	40	16	8	34	1.79
40902--41062	57	2.8	57	78	4	146	41	12	12	33	1.80
40900--42163	56	22.7	56	70	8	587	38	15	10	35	1.83
41651--42046	113	3.5	113	75	4	338	37	16	11	33	1.85
43939--43967	6	5.0	6	91	8	51	82	0	17	0	0.66
43904--43950	25	2.0	23	83	8	58	61	12	17	8	1.55
43939--43971	11	3.1	11	91	4	50	81	0	18	0	0.68
43939--43971	17	2.0	16	94	5	57	81	0	18	0	0.68
44476--44549	37	2.0	37	100	0	148	32	13	13	40	1.84
48093--48146	23	2.3	24	87	3	83	62	12	14	9	1.53
48140--48174	6	6.0	6	93	6	63	82	0	17	0	0.66
48140--48178	12	3.5	11	90	10	62	82	0	17	0	0.68
48134--48178	17	2.8	16	86	6	63	82	0	17	0	0.68
50108--50142	6	6.0	6	93	6	63	82	0	17	0	0.66
50108--50146	12	3.5	11	90	10	62	82	0	17	0	0.68
50108--50146	17	2.4	16	91	4	60	82	0	17	0	0.68
56989--57412	57	7.5	56	76	8	290	38	15	11	35	1.83
56989--57412	113	3.7	111	76	7	363	38	15	11	35	1.83
61667--61913	56	4.4	56	76	9	189	40	15	9	35	1.79
62159--62344	56	3.3	56	75	4	144	37	16	8	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62488--65250	56	49.3	56	71	8	1330	38	15	10	35	1.81
64908--65243	57	5.9	57	75	6	193	38	15	9	36	1.81
65155--65339	97	1.9	96	81	9	225	43	11	9	35	1.74
65252--65388	55	2.5	55	81	3	177	42	10	11	35	1.75
65422--65754	56	5.9	55	72	9	156	39	16	8	35	1.79
65494--65764	56	4.9	55	74	4	163	38	16	7	37	1.77
65708--66041	92	3.6	93	86	1	429	36	15	11	36	1.84
65975--69829	56	68.2	56	69	9	1324	38	15	10	35	1.81
66681--67019	113	3.0	115	77	6	268	38	17	9	34	1.82
67609--67908	57	5.3	57	79	3	169	39	15	9	37	1.78
68414--68556	57	2.5	56	77	5	146	40	18	8	32	1.81
67257--68855	113	14.2	116	70	11	535	39	15	9	35	1.80
68824--69039	91	2.3	94	80	3	251	37	12	13	36	1.83
69660--69783	57	2.2	57	81	5	144	39	16	10	33	1.83

Tables:   1

The End!