genome.fa.s1631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001631.1 Hibiscus syriacus cultivar Beakdansim tig00003245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80053

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18375--18446	31	2.4	31	92	2	128	15	8	31	44	1.76
18114--18708	293	2.0	288	85	9	814	26	11	20	41	1.87
25121--25230	55	2.0	55	98	0	211	22	26	12	38	1.90
25700--25731	2	15.5	2	93	6	55	50	0	3	46	1.17
34618--34700	29	2.8	29	92	1	139	43	9	14	32	1.78
37164--37197	17	2.0	17	94	0	59	44	11	8	35	1.72
51607--51672	32	2.0	33	91	2	107	53	9	3	34	1.48
52486--52537	24	2.2	24	100	0	104	19	11	25	44	1.84
52625--52657	2	17.5	2	87	12	52	48	0	0	51	1.00
52625--52657	17	1.9	17	93	0	57	48	0	0	51	1.00
53760--53885	60	2.1	61	83	7	159	46	5	5	42	1.50
54212--54236	3	8.3	3	100	0	50	0	32	0	68	0.90
57048--57096	20	2.5	20	96	0	89	20	24	22	32	1.98
57913--58025	58	1.9	59	87	1	165	51	1	7	39	1.40
58046--58083	18	2.1	18	95	0	67	36	13	13	36	1.83
64547--64582	19	1.9	18	88	5	54	55	0	0	44	0.99
64600--64637	16	2.4	16	82	4	51	63	0	5	31	1.17
64809--64863	27	2.1	25	80	12	58	58	1	1	38	1.20
65301--65400	35	2.8	36	86	6	130	31	16	15	38	1.89
65910--66801	109	8.6	106	76	12	544	21	21	24	32	1.98
66333--66831	98	4.9	97	79	7	498	21	22	24	32	1.98
65861--66831	105	9.3	104	80	8	890	21	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65864--66831	203	4.7	202	83	7	1091	21	21	24	32	1.98
67150--67378	103	2.2	103	80	4	250	40	14	20	24	1.90
67284--67464	65	2.8	65	91	0	290	35	12	20	31	1.90
67349--67704	102	3.5	102	90	0	550	36	12	20	30	1.90
67414--67719	37	8.8	37	66	19	165	36	13	21	29	1.91
67249--67566	167	1.9	169	91	2	525	36	12	20	30	1.90
67618--67719	36	2.8	36	87	1	141	38	12	23	25	1.90
68521--68571	22	2.3	22	96	0	93	25	11	27	35	1.91
69178--69227	20	2.4	21	83	6	66	2	14	8	76	1.10
69196--69262	21	3.2	20	76	15	57	0	19	7	73	1.07
70388--70429	21	2.0	22	90	4	68	52	4	19	23	1.65
72596--72632	15	2.4	16	82	8	51	62	0	5	32	1.18
73278--73373	35	2.6	37	83	9	110	31	14	14	39	1.86

Tables:   1

The End!