genome.fa.s1633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001633.1 Hibiscus syriacus cultivar Beakdansim tig00003255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80290

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--324	55	4.6	55	86	6	307	38	15	14	31	1.87
73--331	110	2.4	110	84	5	346	39	15	13	30	1.87
1462--1704	55	4.4	55	83	4	246	39	15	13	31	1.87
1501--1715	55	3.9	55	88	1	297	38	13	15	33	1.86
2764--3053	55	5.3	55	83	2	325	34	18	16	30	1.94
2764--3053	109	2.6	110	83	2	334	34	18	16	30	1.94
4058--4371	55	5.7	55	81	7	325	34	17	16	30	1.93
4106--4370	109	2.4	110	85	1	336	36	16	16	30	1.91
5536--5809	55	5.0	55	87	0	379	34	17	16	31	1.92
7410--7461	27	1.9	27	100	0	104	25	26	7	40	1.82
7411--7469	27	2.2	27	93	0	100	25	28	10	35	1.89
11445--11597	56	2.8	55	83	4	184	39	18	14	28	1.89
11445--11621	54	3.2	55	81	4	205	36	19	15	28	1.92
16324--16374	22	2.3	21	83	12	59	54	3	0	41	1.19
17610--17660	17	2.9	17	83	11	68	23	0	1	74	0.92
26734--27061	176	1.9	174	87	2	487	42	13	7	37	1.72
27796--27914	59	2.1	57	84	7	152	31	26	16	26	1.97
31339--34032	678	4.0	675	93	0	4487	33	17	11	37	1.86
37235--37284	7	7.4	7	88	8	77	24	28	30	18	1.97
37239--37278	13	3.1	13	100	0	80	25	30	30	15	1.95
37235--37284	20	2.5	20	90	6	75	24	28	30	18	1.97
37274--37331	17	3.4	17	90	0	80	17	18	43	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37325--37414	19	4.7	19	86	6	110	25	30	25	18	1.98
37325--37413	9	9.3	9	72	11	70	25	30	25	17	1.98
44489--44534	13	3.5	13	96	3	83	23	30	30	15	1.95
44485--44534	20	2.5	20	93	6	84	24	30	30	16	1.96
44485--44534	7	7.4	7	91	8	86	24	30	30	16	1.96
44524--44579	17	3.4	16	90	2	76	17	23	39	19	1.92
44578--44615	20	1.9	20	94	0	67	34	26	21	18	1.96
44574--44614	9	4.3	9	82	11	55	31	26	24	17	1.97
48452--48781	176	1.9	175	90	3	529	42	13	8	36	1.74
58060--58099	21	1.9	21	85	10	55	42	15	0	42	1.46
59161--59187	2	13.5	2	100	0	54	48	0	0	51	1.00
61710--61750	21	2.0	21	85	9	57	36	14	2	46	1.58
61959--62012	20	2.7	20	94	0	90	18	27	24	29	1.98
62093--62132	20	1.9	22	90	10	66	37	40	10	12	1.77
65453--65493	20	2.0	20	90	0	64	21	21	21	34	1.97
65682--65731	23	2.2	23	100	0	100	28	4	20	48	1.67

Tables:   1

The End!