genome.fa.s1634.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001634.1 Hibiscus syriacus cultivar Beakdansim tig00003259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59943

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662--773	28	4.0	29	83	6	142	36	23	6	33	1.80
662--773	57	2.0	56	84	8	147	36	23	6	33	1.80
807--850	18	2.4	19	88	3	72	22	29	29	18	1.97
7686--7790	29	3.7	29	87	3	142	37	24	6	31	1.81
7789--7813	13	1.9	13	100	0	50	12	24	40	24	1.88
7792--7831	17	2.4	16	87	8	53	10	22	47	20	1.79
7836--7902	19	3.5	19	85	4	91	19	28	29	22	1.98
8671--8719	19	2.6	18	81	9	62	73	2	4	20	1.10
8968--9006	12	3.2	12	96	3	69	10	30	15	43	1.80
9189--9374	64	2.9	65	93	4	313	54	16	0	27	1.46
14675--14723	3	16.3	3	91	0	71	69	26	0	4	1.06
14675--14723	18	2.7	18	93	0	80	69	26	0	4	1.06
20355--20411	4	14.0	4	77	15	55	71	0	1	26	0.95
20350--20416	18	3.4	19	85	12	82	73	0	2	23	0.97
21334--22252	56	16.3	56	76	5	688	34	11	16	36	1.85
21357--22227	170	5.2	167	77	6	591	34	11	16	37	1.85
23764--23842	31	2.5	31	89	0	122	20	18	20	40	1.92
23766--23854	31	2.9	31	83	6	108	23	16	20	39	1.92
29841--29886	2	23.0	2	100	0	92	50	0	0	50	1.00
30738--31121	56	6.9	55	78	9	262	34	10	15	39	1.82
31192--31234	20	2.2	20	91	0	68	32	11	20	34	1.89
41349--41708	56	6.4	56	78	6	300	35	9	16	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41759--42140	56	7.0	55	73	14	229	36	7	16	39	1.76
41869--42131	112	2.3	111	78	8	273	36	7	16	40	1.76
41457--42224	421	1.8	421	81	4	967	35	8	16	39	1.79
42219--42263	23	2.0	23	82	8	56	37	6	8	46	1.61
42194--42316	56	2.2	56	88	0	174	36	6	13	43	1.69
41457--42492	421	2.5	421	78	7	954	36	8	16	38	1.78
42248--42528	98	2.7	105	78	8	279	37	8	16	38	1.78
42325--43503	56	20.9	56	76	6	866	35	10	15	37	1.83
42370--42702	171	2.0	170	81	9	394	35	10	16	38	1.83
43455--43677	93	2.4	94	80	5	256	38	10	16	34	1.83
43701--43879	98	1.8	98	81	2	225	34	11	13	40	1.81
43790--43901	56	2.0	57	87	1	163	34	12	16	35	1.87
43646--43935	154	1.9	154	80	5	345	34	10	14	40	1.81
44390--44432	12	3.5	12	78	15	52	62	0	13	23	1.31
49163--49236	22	3.4	22	98	0	139	47	20	12	20	1.81
49661--49700	20	2.0	20	90	9	64	2	17	0	80	0.83
52170--52219	22	2.2	23	82	3	57	70	4	14	12	1.31
57672--58254	56	10.7	56	68	14	143	35	9	16	38	1.81
57884--57986	54	1.9	54	83	0	134	35	6	16	40	1.75

Tables:   1

The End!