genome.fa.s1635.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001635.1 Hibiscus syriacus cultivar Beakdansim tig00003266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115882

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754--1820	31	2.2	30	84	7	82	26	10	4	58	1.50
2957--3018	23	2.7	23	87	2	90	48	33	0	17	1.48
4975--5017	18	2.5	17	82	10	52	65	2	9	23	1.34
5616--5659	23	2.0	22	86	4	61	63	4	15	15	1.46
10129--10235	24	4.5	24	74	0	97	47	15	14	21	1.82
10129--10237	48	2.3	48	77	3	121	47	15	15	21	1.82
14443--14491	18	2.6	19	84	12	66	61	4	8	26	1.42
18737--18790	22	2.4	23	93	3	92	35	3	12	48	1.60
18740--18790	23	2.3	22	93	3	84	35	3	9	50	1.54
18917--18979	28	2.2	28	97	0	117	46	22	3	28	1.67
19288--19353	2	32.0	2	95	3	114	48	1	1	48	1.20
20050--20221	57	3.0	57	88	8	260	36	31	18	13	1.89
24224--24282	23	2.6	23	84	10	68	50	1	0	47	1.11
24237--24293	29	2.0	27	83	6	69	45	0	0	54	0.99
24287--24318	15	2.2	15	94	5	57	34	6	3	56	1.40
24668--24734	23	3.0	23	80	10	59	52	2	1	43	1.25
24694--24755	32	1.9	32	86	0	88	53	3	0	43	1.17
24701--24767	32	2.3	27	76	18	71	52	1	0	46	1.09
38955--39005	26	2.0	25	88	3	75	29	11	7	50	1.67
39222--39277	15	3.9	15	68	27	50	58	5	0	35	1.21
39217--39311	42	2.3	41	77	12	95	62	5	0	32	1.18
39295--39354	15	3.9	15	74	10	50	70	3	0	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40057--40100	2	22.5	2	95	4	81	47	0	0	52	1.00
41659--41841	2	93.5	2	70	16	125	46	2	2	48	1.28
41659--41787	43	3.0	46	76	14	69	47	3	1	48	1.27
41841--41935	20	4.7	20	76	7	93	43	5	8	43	1.57
41818--41935	61	1.9	63	86	6	170	44	5	6	43	1.52
42008--42064	28	2.1	27	83	9	71	50	1	8	38	1.44
43270--43303	17	1.9	18	94	5	61	47	20	11	20	1.81
43538--44423	2	440.5	2	64	21	200	46	4	4	44	1.44
43596--43809	7	29.6	7	71	20	97	56	2	7	33	1.41
43981--44050	31	2.2	32	87	7	97	50	1	5	42	1.35
44090--44299	49	4.6	48	78	13	160	41	5	2	50	1.39
49143--49259	24	4.8	24	82	6	128	28	13	17	41	1.87
50753--50795	7	6.3	7	79	15	54	58	0	0	41	0.98
50753--50795	20	2.1	21	91	4	70	58	0	0	41	0.98
50759--50797	13	3.0	13	88	7	53	58	0	0	41	0.98
51235--51730	83	6.0	83	92	0	762	23	23	12	40	1.88
61085--61131	21	2.2	21	84	0	67	10	19	36	34	1.86
61181--61220	20	2.0	21	90	5	64	60	2	0	37	1.11
61346--61391	24	1.9	24	82	8	58	30	10	6	52	1.62
61478--61503	7	3.7	7	100	0	52	57	11	0	30	1.34
61902--61947	24	1.9	24	82	8	58	36	13	2	47	1.54
62038--62250	22	9.7	23	76	15	140	53	0	8	36	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62031--62248	36	5.8	36	78	19	216	54	0	8	36	1.37
62036--62249	8	29.6	7	68	25	92	54	0	8	36	1.37
62034--62248	73	2.9	73	81	14	223	53	0	8	36	1.37
62128--62238	57	1.9	60	87	9	167	55	1	6	36	1.36
62246--62308	21	3.2	20	76	19	69	44	1	0	53	1.10
64219--64280	2	31.0	2	100	0	124	50	0	0	50	1.00
65554--65591	2	19.0	2	100	0	76	50	0	0	50	1.00
70177--70259	31	2.7	31	88	0	103	34	31	24	9	1.87
75399--75464	31	2.1	31	88	0	96	34	27	21	16	1.95
77915--77994	31	2.6	31	86	4	108	32	31	21	15	1.94
77943--78016	31	2.4	31	83	0	85	36	31	18	13	1.90
84570--84611	20	2.1	20	100	0	84	42	33	9	14	1.78
85724--85780	14	4.3	14	76	8	57	43	0	0	56	0.99
87561--87621	21	2.9	21	95	0	104	18	36	21	24	1.95
88142--88216	34	2.2	34	97	0	141	48	8	5	38	1.56
88235--88272	19	2.0	19	85	10	51	44	5	10	39	1.61
88338--88363	13	2.0	13	100	0	52	61	7	0	30	1.24
88834--88874	16	2.6	16	92	0	64	14	46	36	2	1.58
90563--90637	22	3.4	23	72	20	63	46	0	1	52	1.09
90561--90641	26	3.3	26	73	18	75	46	0	1	51	1.08
90563--90635	21	3.4	22	78	16	73	46	0	1	52	1.09
94194--94249	15	3.6	15	79	9	67	42	12	12	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94197--94247	17	3.1	17	77	11	61	43	11	9	35	1.75
94646--94700	13	4.2	13	75	13	58	49	12	3	34	1.59
94686--94784	33	3.0	33	94	1	164	45	15	7	32	1.73
94779--94818	21	1.9	21	94	0	71	47	7	15	30	1.72
101599--101623	12	2.1	12	100	0	50	36	16	32	16	1.90
106293--106344	22	2.4	22	83	6	61	25	5	1	67	1.23

Tables:   1

The End!