genome.fa.s1636.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001636.1 Hibiscus syriacus cultivar Beakdansim tig00003275_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128213

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1895--1950	21	2.7	21	78	10	69	7	30	42	19	1.78
14234--14300	29	2.4	29	78	7	68	26	5	2	64	1.31
19027--19304	42	6.5	44	76	8	202	23	19	7	50	1.73
24691--24753	21	3.0	21	66	13	58	49	6	11	33	1.64
25604--25677	3	24.7	3	100	0	148	66	0	0	33	0.92
35659--35683	13	1.9	13	100	0	50	24	0	0	76	0.80
40798--40836	15	2.5	15	87	8	51	12	33	30	23	1.92
40862--40933	17	4.4	17	85	7	94	15	26	34	23	1.94
42865--42907	21	2.0	22	82	13	54	34	0	16	48	1.46
43460--43504	21	2.1	21	87	0	63	31	28	24	15	1.96
44326--44481	31	5.0	31	91	1	233	21	21	21	35	1.96
48262--48313	23	2.2	23	96	3	95	48	13	7	30	1.71
54802--54883	41	2.0	41	100	0	164	29	26	9	34	1.88
65261--65304	22	2.0	22	81	4	52	68	0	2	29	1.02
68824--68862	17	2.3	17	90	0	60	23	0	28	48	1.51
73541--73567	2	13.5	2	100	0	54	48	0	0	51	1.00
76143--76207	21	3.1	21	68	24	64	41	10	4	43	1.60
76440--76472	17	1.9	17	93	0	57	57	18	0	24	1.40
78509--78655	80	1.9	79	84	5	199	40	11	14	34	1.82
91847--91894	24	2.0	24	100	0	96	45	12	12	29	1.78
92635--92800	82	2.0	82	100	0	332	34	19	22	24	1.96
94051--94089	17	2.2	17	86	4	51	28	10	12	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98185--98222	2	19.0	2	100	0	76	50	0	0	50	1.00
98417--98540	24	5.2	24	85	5	90	42	19	13	24	1.87
98434--98549	24	4.8	24	87	4	162	40	18	15	25	1.90
99658--99693	18	2.0	18	88	0	54	30	16	0	52	1.44
102700--102764	29	2.2	29	97	0	121	23	3	29	44	1.68
122400--122429	2	15.0	2	92	0	51	50	3	0	46	1.18
123347--123382	17	2.2	16	90	5	54	69	0	0	30	0.89
123334--123389	29	1.9	28	82	13	69	64	1	0	33	1.04
126646--127171	143	3.7	141	82	4	605	20	23	24	30	1.99

Tables:   1

The End!