Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001637.1 Hibiscus syriacus cultivar Beakdansim tig00003276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136541

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3164--3205
10
4.0
11
84
9
61
23
0
2
73
0.94
3165--3207
5
8.4
5
80
14
52
20
0
2
76
0.89
3165--3207
21
2.1
21
91
4
70
20
0
2
76
0.89
3165--3220
21
2.7
20
83
10
69
21
0
3
75
0.96
4006--4040
17
2.1
17
100
0
70
17
14
40
28
1.88
6318--6378
32
1.9
32
89
0
95
16
4
21
57
1.58
7365--7850
83
5.9
83
84
1
571
30
20
15
33
1.94
7365--7846
166
2.9
166
85
1
635
30
20
15
33
1.94
7366--7844
249
1.9
249
84
0
645
30
20
15
34
1.93
12622--12703
43
1.9
43
97
0
155
29
21
21
26
1.99
18387--19440
279
3.8
279
84
3
1189
28
25
15
31
1.95
19106--19221
57
2.0
57
84
0
151
37
22
16
24
1.94
19163--19881
219
3.3
221
85
5
917
26
25
16
31
1.96
19828--19940
57
2.0
57
82
6
140
38
23
16
22
1.93
21027--21067
23
1.9
21
85
14
57
2
48
0
48
1.14
21795--21834
3
13.3
3
94
0
71
62
0
37
0
0.95
26839--26899
23
2.7
23
77
10
70
26
24
26
22
2.00
27010--27045
18
2.0
18
100
0
72
33
33
22
11
1.89
26906--27148
121
2.0
121
95
0
441
36
25
13
24
1.92
28426--28469
21
2.1
21
86
0
61
15
27
27
29
1.96
29779--29804
2
13.0
2
100
0
52
50
0
0
50
1.00
47077--47183
24
4.5
24
73
0
97
47
17
12
22
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47077--47185
48
2.3
48
77
0
119
47
17
12
22
1.81
49653--49690
7
5.3
7
93
6
67
28
26
31
13
1.93
49688--49753
5
11.4
5
74
25
51
12
19
51
16
1.75
49682--49752
18
4.2
18
79
17
89
14
19
49
16
1.80
49693--49729
13
2.8
13
91
0
65
13
21
48
16
1.80
49686--49746
31
2.0
31
96
0
113
16
18
49
16
1.80
51820--51925
24
4.5
24
72
2
97
48
17
12
21
1.80
51820--51927
47
2.3
48
77
1
119
48
17
12
21
1.81
54392--54430
7
5.3
7
88
11
60
28
25
33
12
1.93
54390--54430
15
2.7
15
96
0
73
26
26
34
12
1.92
54428--54493
5
11.4
5
74
25
51
12
19
51
16
1.75
54422--54492
18
4.2
18
79
17
89
14
19
49
16
1.80
54433--54469
13
2.8
13
91
0
65
13
21
48
16
1.80
54390--54433
8
5.8
8
86
10
65
25
27
34
13
1.93
54426--54486
31
2.0
31
96
0
113
16
18
49
16
1.80
59945--59990
22
2.1
22
88
8
67
13
4
2
80
0.95
59986--60039
3
18.0
3
92
7
92
33
0
0
66
0.92
59985--60050
33
2.0
33
85
5
89
37
0
0
62
0.96
63144--63223
20
3.9
19
76
12
61
20
23
31
25
1.98
69537--69576
21
1.9
21
85
10
55
35
10
2
52
1.48
71696--71733
19
2.0
19
100
0
76
26
0
21
52
1.47
71703--71744
19
2.2
19
86
0
57
33
2
14
50
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72447--72486
21
1.9
21
85
10
55
30
7
0
62
1.23
72592--72640
19
2.8
17
79
17
55
42
2
2
53
1.24
72962--72997
18
2.0
18
89
10
56
38
0
0
61
0.96
78448--78487
18
2.2
18
86
0
53
17
10
2
70
1.27
78458--78535
22
3.5
23
70
10
63
19
7
1
71
1.17
84086--84406
103
3.1
103
94
0
543
26
12
23
38
1.90
84422--84508
23
3.8
23
98
0
165
18
25
26
29
1.98
86347--86703
179
2.0
177
98
1
696
37
14
21
27
1.91
89395--89446
19
2.7
19
100
0
104
28
17
26
26
1.97
90163--90582
103
4.1
103
95
1
731
25
12
23
37
1.91
90598--90661
23
2.8
23
90
9
96
18
25
26
29
1.98
91996--92216
120
1.8
120
83
5
295
32
27
19
21
1.97
92575--92863
84
3.5
82
77
5
298
33
25
18
22
1.97
93888--93970
29
2.8
29
90
1
130
42
10
14
32
1.80
100115--100143
13
2.1
14
93
6
51
13
27
13
44
1.82
102307--102377
35
2.0
35
83
5
90
25
8
12
53
1.66
102254--102499
116
2.0
116
81
9
280
36
7
13
43
1.71
112956--113011
21
2.7
21
78
10
69
7
30
42
19
1.78
130005--130206
42
4.8
43
76
9
193
23
21
6
48
1.74
130033--130263
127
1.8
127
81
3
286
23
19
6
50
1.71
130173--130280
41
2.5
44
77
14
102
25
12
8
54
1.64
136432--136517
3
28.7
3
90
9
140
66
0
1
32
1.00

Tables:   1

The End!