genome.fa.s1638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001638.1 Hibiscus syriacus cultivar Beakdansim tig00003277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106078

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1675--1741	19	3.5	20	83	4	84	40	23	20	14	1.90
1730--1787	14	3.9	14	81	16	71	50	22	17	10	1.76
1714--1792	32	2.4	33	93	2	133	48	21	18	11	1.80
1816--1879	14	4.3	14	79	14	74	9	15	21	53	1.70
1804--1894	32	2.8	33	89	3	139	12	16	20	50	1.77
1888--1933	20	2.3	20	85	7	58	15	23	23	36	1.93
1990--2030	16	2.5	16	88	4	55	73	19	2	4	1.13
2412--2451	18	2.2	18	90	0	62	15	12	45	27	1.82
3779--3836	20	3.0	20	87	2	73	41	22	18	17	1.90
4310--4424	20	5.7	20	77	9	90	23	18	24	33	1.96
4351--4445	41	2.3	41	81	3	111	20	21	23	35	1.96
4823--4863	21	1.9	21	85	5	55	63	2	0	34	1.08
4844--4909	27	2.4	27	94	0	114	56	0	4	39	1.20
4955--5007	2	27.0	2	96	3	99	50	0	0	49	1.00
12639--13173	43	12.6	43	72	9	305	50	5	17	26	1.67
12734--12939	84	2.4	85	78	7	200	52	5	17	24	1.65
13119--13239	41	2.9	40	81	7	118	53	4	14	28	1.58
13514--13565	14	3.9	13	76	18	54	32	1	0	65	1.04
13528--13576	13	3.6	13	75	20	55	36	0	0	63	0.95
13512--13578	28	2.4	28	95	2	118	37	1	0	61	1.05
13530--13575	14	3.3	14	76	11	58	34	0	0	65	0.93
19172--19237	32	2.1	32	94	0	114	27	22	4	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19452--19499	2	24.0	2	100	0	96	50	0	0	50	1.00
40372--40421	24	2.0	24	84	3	64	50	0	0	50	1.00
40373--40423	23	2.2	24	82	3	59	52	0	0	47	1.00
50494--50545	1	52.0	1	82	0	50	88	7	3	0	0.62
50507--50553	22	2.1	22	96	0	85	82	8	6	2	0.90
65767--65801	18	1.9	18	88	0	52	25	31	20	22	1.98
70600--70654	20	2.8	20	91	0	92	25	18	18	38	1.93
71922--71960	20	2.0	20	84	0	51	25	12	2	58	1.47
73185--73225	21	1.9	22	85	5	57	24	14	17	43	1.86
75676--75728	20	2.7	20	82	5	63	28	24	7	39	1.82
79474--79522	6	8.0	6	83	2	53	30	46	16	6	1.71
86164--86216	27	2.0	27	85	14	74	58	1	13	26	1.45
86544--87279	2	368.5	2	67	19	312	49	2	4	42	1.39
86728--86845	53	2.2	52	80	7	123	47	2	5	44	1.38
87208--87409	31	6.9	30	71	23	105	51	1	7	38	1.41
87278--87414	8	18.5	8	73	22	90	54	1	8	35	1.41
87323--87428	51	2.0	52	85	7	144	55	0	7	36	1.28
88196--88229	17	2.0	17	94	0	59	47	17	14	20	1.83
88233--88262	14	2.1	14	93	0	51	36	16	20	26	1.93
88429--88469	14	3.0	14	82	13	50	39	14	2	43	1.59
89634--89664	16	2.0	16	93	6	55	61	6	12	19	1.53
95605--95655	26	2.0	26	84	0	66	49	3	3	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95605--96982	467	3.0	466	90	5	2193	36	13	9	39	1.78
97286--97336	23	2.2	24	82	10	70	41	3	0	54	1.19
97293--97345	23	2.4	23	84	6	65	39	3	0	56	1.17
97607--97654	21	2.2	23	85	7	64	50	2	2	45	1.25
97641--97685	20	2.2	20	79	20	58	35	2	0	62	1.08
97643--97704	23	2.9	22	88	7	83	37	1	1	59	1.17
98065--98136	23	3.2	23	94	3	121	43	0	4	52	1.20
98065--98122	15	3.8	16	84	6	75	44	0	5	50	1.24
98065--98122	8	7.5	8	84	7	75	44	0	5	50	1.24
98773--98911	30	4.6	30	76	5	138	61	11	5	22	1.49
98781--98911	60	2.2	60	92	0	217	61	11	5	22	1.50
98769--98926	15	10.5	15	70	9	72	60	11	5	22	1.51
98781--98936	60	2.6	59	84	2	204	60	10	5	23	1.51

Tables:   1

The End!