genome.fa.s1639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001639.1 Hibiscus syriacus cultivar Beakdansim tig00003278_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76485

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5815--5845	2	15.5	2	100	0	62	51	0	0	48	1.00
10824--10858	2	17.5	2	100	0	70	51	0	0	48	1.00
12696--13096	186	2.2	185	81	6	481	45	9	6	38	1.62
14558--14582	3	8.3	3	100	0	50	32	0	0	68	0.90
15362--15471	50	2.2	49	81	3	130	14	31	30	22	1.94
15682--15720	18	2.2	18	90	4	62	30	2	2	64	1.21
15784--16005	111	2.0	111	93	0	381	35	8	11	45	1.70
18025--18116	48	2.0	45	87	6	130	25	5	4	65	1.33
22376--22426	16	3.2	17	71	23	56	43	0	19	37	1.51
28426--28537	20	5.7	20	72	7	77	42	26	16	14	1.86
28487--28756	20	13.5	20	87	1	281	36	25	17	20	1.94
29439--29485	24	2.0	24	87	8	69	25	14	21	38	1.92
29660--29684	12	2.1	12	100	0	50	72	0	28	0	0.86
32020--32117	19	5.4	19	82	13	134	16	21	16	45	1.85
32001--32117	53	2.2	52	95	1	207	15	23	17	44	1.86
32175--32323	33	4.3	33	73	18	142	44	18	24	13	1.85
32175--32304	19	7.3	19	79	17	163	45	17	23	13	1.84
32313--32448	19	7.6	19	78	17	166	15	24	16	43	1.87
32175--32323	52	2.8	52	98	1	289	44	18	24	13	1.85
32313--32448	33	3.9	33	72	20	125	15	24	16	43	1.87
32313--32448	53	2.6	52	94	2	236	15	24	16	43	1.87
32555--32591	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34569--34625	14	3.7	14	77	20	60	45	22	21	10	1.82
34550--34642	33	2.8	33	95	0	168	47	21	20	10	1.80
34513--34647	19	7.6	19	76	16	128	45	23	19	11	1.82
34643--34771	19	7.3	19	75	17	125	8	17	28	45	1.77
34643--34734	33	2.8	33	93	3	150	7	18	28	45	1.76
34815--35195	93	4.1	93	98	0	744	45	18	12	22	1.83
36899--37009	14	6.8	18	74	21	102	42	22	25	9	1.84
36892--37004	32	3.5	32	93	3	199	44	21	24	9	1.82
37021--37077	14	3.7	14	75	20	60	8	24	22	43	1.81
37005--37085	33	2.5	33	95	0	144	8	22	22	46	1.78
37062--37137	21	3.7	21	83	3	109	11	25	17	46	1.82
37061--37138	41	1.9	41	97	0	147	12	25	16	44	1.83
37217--37287	33	2.2	33	89	0	106	47	16	23	11	1.79
37469--37523	22	2.5	22	81	0	74	20	16	40	23	1.91
37670--37863	20	9.6	20	82	5	221	19	19	25	35	1.95
37670--37863	60	3.2	60	83	0	253	19	19	25	35	1.95
37850--37932	21	4.0	21	73	6	78	25	16	24	33	1.96
37830--37928	42	2.4	43	77	11	100	21	18	23	37	1.94
45943--46150	93	2.3	91	81	3	247	32	14	7	45	1.74
47047--47097	21	2.4	22	83	6	70	21	0	9	68	1.18
52254--52394	42	3.5	40	82	12	173	51	4	17	26	1.65
52254--52399	38	3.7	38	75	14	134	52	4	17	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53564--53621	23	2.5	23	88	0	89	55	1	3	39	1.27
55708--55738	3	10.3	3	100	0	62	64	0	0	35	0.94
61140--61198	29	2.0	29	84	12	77	3	13	37	45	1.60
66979--67043	32	2.0	32	87	0	94	40	9	6	44	1.61
72415--72540	35	3.6	35	89	2	173	39	23	1	35	1.64
72434--72491	17	3.4	17	67	9	55	36	22	3	37	1.71
72415--72524	35	3.2	35	92	2	177	38	22	1	37	1.65
72415--72560	35	4.2	35	87	1	168	39	21	1	37	1.62
72556--72629	34	2.1	35	82	7	89	35	0	20	44	1.52

Tables:   1

The End!