Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000164.1 Hibiscus syriacus cultivar Beakdansim tig00000290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87424

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8076--8141
22
3.1
22
78
10
66
59
1
1
37
1.16
8057--8129
33
2.2
33
82
4
85
58
0
2
38
1.12
18085--18144
23
2.7
22
82
12
70
21
23
33
21
1.97
24052--24089
2
19.0
2
100
0
76
50
0
0
50
1.00
24337--24496
18
8.9
18
84
0
212
28
30
20
21
1.98
32182--32225
3
16.0
3
80
17
51
75
0
25
0
0.81
32186--32227
8
5.2
8
86
8
59
78
0
21
0
0.75
32183--32235
27
2.0
26
92
3
88
77
0
20
1
0.87
32186--32236
24
2.1
24
85
7
68
76
0
21
1
0.88
33352--33383
15
2.1
15
100
0
64
50
6
18
25
1.70
34164--34197
18
1.9
17
88
5
50
64
5
0
29
1.17
43264--43379
35
3.3
35
90
2
162
37
18
24
18
1.94
48454--48506
19
2.7
19
88
2
70
35
32
9
22
1.86
48782--48825
22
2.0
22
90
0
70
20
45
13
20
1.85
49170--49208
20
2.0
20
94
0
69
51
17
12
17
1.76
49231--49280
15
2.8
18
77
20
52
20
16
16
48
1.82
49233--49263
15
2.1
15
100
0
62
19
12
12
54
1.70
49259--49296
14
2.8
14
84
4
51
23
10
18
47
1.79
52266--52299
12
2.8
12
90
0
50
14
0
29
55
1.40
52891--52928
16
2.5
15
84
12
51
65
0
5
28
1.14
53086--53175
40
2.2
40
82
0
108
38
10
20
31
1.85
53084--53241
40
3.9
39
72
7
102
39
11
18
30
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53216--53254
20
1.9
21
84
5
53
33
12
25
28
1.93
53565--53716
51
3.0
51
88
1
207
19
28
32
20
1.97
53921--53999
30
2.7
30
80
9
108
26
0
2
70
0.99
53926--53996
20
3.9
19
73
14
60
26
0
2
70
1.01
58060--58136
30
2.5
31
87
4
111
18
5
37
38
1.73
73735--73771
16
2.4
15
90
4
56
43
0
2
54
1.14
75035--75076
19
2.4
18
84
11
52
73
0
2
23
0.94
77556--77744
103
1.8
105
87
4
285
46
13
13
26
1.80
77556--77749
36
5.5
36
84
6
245
45
12
14
26
1.81
77717--77840
65
1.9
67
83
6
164
40
9
12
37
1.77
80939--81508
80
7.1
81
88
4
759
35
12
22
30
1.90
80939--81508
237
2.4
240
85
5
769
35
12
22
30
1.90
85122--85152
16
1.9
16
100
0
62
58
22
12
6
1.58
85219--85307
23
3.8
24
89
7
130
55
24
14
5
1.61
85242--85313
13
6.2
11
72
24
51
58
22
12
6
1.58
85261--85305
11
3.5
13
75
25
51
57
22
13
6
1.59
85272--85313
13
3.4
13
80
12
61
61
19
9
9
1.53
85215--85313
23
4.2
24
88
6
125
57
22
13
7
1.60
85554--85607
24
2.2
24
86
0
72
59
12
9
18
1.60

Tables:   1

The End!