Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001641.1 Hibiscus syriacus cultivar Beakdansim tig00003287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120178

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100--145
18
2.6
18
100
0
92
41
17
6
34
1.75
2444--2554
47
2.4
45
77
10
116
40
19
12
27
1.88
6548--6592
22
2.0
22
100
0
90
13
46
13
26
1.80
19927--19961
18
2.0
17
88
5
52
40
0
0
60
0.97
27812--27862
22
2.3
22
96
0
93
31
25
17
25
1.97
32592--32651
31
1.9
31
86
10
86
36
1
0
61
1.06
34703--34746
22
2.0
22
100
0
88
27
22
22
27
1.99
39368--39398
12
2.6
12
94
0
53
32
19
19
29
1.96
39382--39420
17
2.3
17
90
0
60
28
23
25
23
1.99
39494--39543
7
7.1
7
86
0
73
22
0
36
42
1.54
39607--39642
17
2.1
17
94
0
63
52
11
8
27
1.65
42845--42873
10
2.9
10
100
0
58
48
0
0
51
1.00
42881--42979
32
3.1
31
77
8
94
52
3
0
44
1.16
42927--42979
17
3.2
17
72
5
54
58
1
0
39
1.09
42881--43000
64
1.9
61
81
14
145
51
3
1
43
1.28
43496--43551
10
5.5
10
75
12
51
21
7
3
67
1.30
43497--43557
31
1.9
32
90
3
97
22
6
3
67
1.29
44819--44858
17
2.4
17
91
4
64
40
5
7
47
1.54
45610--45728
8
16.1
8
67
27
77
42
0
0
56
1.05
45599--45717
19
6.3
20
72
18
80
44
0
0
54
1.05
45617--45729
29
3.9
29
97
0
217
43
0
0
55
1.05
54823--54874
26
2.0
26
96
0
95
44
7
25
23
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55173--55242
34
2.1
32
86
5
95
21
31
14
32
1.93
55596--55715
43
2.9
42
85
6
147
16
26
35
20
1.94
55601--55715
20
5.6
20
85
3
122
15
26
36
20
1.93
56897--56947
22
2.3
22
93
0
84
31
25
25
17
1.97
56905--56950
22
2.1
22
100
0
92
26
26
28
19
1.99
57208--57273
29
2.3
29
92
5
109
39
19
9
31
1.83
57210--57268
27
2.3
27
82
8
70
42
18
8
30
1.80
57912--58301
194
2.0
193
95
4
705
33
21
8
36
1.85
63551--63618
22
3.1
22
100
0
136
26
26
27
19
1.99
63879--63948
29
2.4
29
100
0
140
41
17
8
32
1.79
64250--64400
67
2.3
67
87
2
214
17
27
27
27
1.98
64250--64422
67
2.6
67
84
5
190
17
27
26
27
1.98
67300--67369
34
2.1
32
84
5
86
24
28
15
31
1.96
67718--67772
20
2.8
20
91
0
92
14
27
38
20
1.91
68428--68463
17
2.1
17
100
0
72
30
13
22
33
1.93
69158--69231
2
37.0
2
100
0
148
50
0
0
50
1.00
69945--70029
25
3.5
23
78
13
82
36
18
1
43
1.58
73436--73469
17
2.0
18
88
11
54
61
5
0
32
1.20
90052--90105
21
2.6
21
87
0
72
20
22
29
27
1.98
90098--90332
21
11.4
21
83
7
243
22
17
20
39
1.92
90057--90332
103
2.7
103
93
1
471
22
18
21
37
1.94
90116--90340
82
2.8
80
84
7
292
23
17
20
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91010--91076
19
3.3
19
71
15
62
32
17
20
28
1.96
91039--91112
21
3.6
21
76
7
80
33
24
21
20
1.97
91011--91106
40
2.3
40
89
3
147
34
20
20
23
1.97
95085--95127
17
2.5
17
96
0
77
13
34
16
34
1.88
108249--108390
72
2.0
73
85
1
196
30
17
18
33
1.94
109062--109095
17
2.0
17
88
0
50
38
26
8
26
1.85

Tables:   1

The End!