Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001642.1 Hibiscus syriacus cultivar Beakdansim tig00003290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72158

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6415--6684
149
1.8
145
87
4
353
33
18
11
36
1.86
9655--9684
14
2.1
14
93
0
51
83
6
6
3
0.90
13446--13945
214
2.3
212
90
3
772
51
7
10
30
1.64
14043--14171
43
3.1
40
73
11
125
48
3
0
47
1.26
14113--14170
25
2.3
25
91
8
91
48
5
0
46
1.24
14040--14171
18
7.6
18
70
16
75
48
4
0
46
1.28
14040--14197
20
7.9
20
71
19
84
48
5
1
44
1.34
14043--14159
2
60.0
2
75
17
104
47
3
0
48
1.24
14291--14344
17
3.1
17
81
2
63
46
0
3
50
1.19
14323--14381
22
2.5
24
81
13
77
44
1
5
49
1.34
16560--16586
2
13.5
2
100
0
54
51
0
0
48
1.00
19804--19883
35
2.4
34
87
4
108
45
17
0
37
1.49
19866--19943
35
2.2
34
84
6
102
41
0
15
43
1.46
30236--30321
26
3.3
26
78
0
91
34
4
16
44
1.68
30882--30922
22
1.9
21
90
5
64
43
2
0
53
1.13
31203--31281
24
3.2
24
90
3
113
43
0
8
48
1.34
34947--34994
21
2.3
21
85
7
62
20
18
6
54
1.65
34959--35000
7
6.1
7
81
13
52
16
16
9
57
1.65
42481--42632
79
2.0
76
86
3
214
36
17
11
34
1.87
42782--43185
123
3.3
122
89
2
605
39
14
20
25
1.90
45095--45132
2
19.0
2
94
0
67
47
0
2
50
1.15
48189--48280
2
48.0
2
68
12
59
48
2
5
43
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49005--49029
2
12.5
2
100
0
50
52
0
0
48
1.00
49358--49401
20
2.2
20
83
4
52
29
6
13
50
1.68
49460--49485
2
13.0
2
100
0
52
50
0
0
50
1.00
49539--49580
21
2.0
22
85
4
59
50
2
0
47
1.14
49863--49893
16
1.9
16
93
0
53
29
6
25
38
1.81
57821--57882
32
1.9
32
83
0
79
27
16
20
35
1.94
64972--65063
30
3.1
30
90
3
141
41
18
27
13
1.87
70509--70556
21
2.3
21
92
0
78
25
18
14
41
1.88

Tables:   1

The End!