genome.fa.s1643.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001643.1 Hibiscus syriacus cultivar Beakdansim tig00003292_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139279

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1983--2014	15	2.1	15	94	0	55	50	0	0	50	1.00
3590--3631	20	2.0	22	86	9	61	45	2	0	52	1.13
5633--5681	20	2.5	20	93	6	82	16	28	24	30	1.96
5633--5706	30	2.5	29	77	16	80	17	27	27	28	1.98
5633--5689	20	2.8	19	87	10	78	17	28	26	28	1.98
5709--5766	5	10.8	5	78	14	62	18	51	22	6	1.70
5709--5773	22	3.0	22	100	0	130	18	49	23	9	1.76
5702--5739	17	2.2	17	100	0	76	18	47	23	10	1.79
5763--5793	7	4.4	7	100	0	62	16	29	29	25	1.96
6661--6784	63	2.0	63	82	9	155	16	27	29	26	1.97
6661--6784	31	4.0	32	72	12	80	16	27	29	26	1.97
12970--13060	10	9.4	9	75	13	83	15	26	28	29	1.96
12969--13060	19	4.7	20	80	14	102	16	26	28	29	1.97
12969--13043	29	2.5	30	91	8	127	16	26	28	29	1.96
13066--13126	5	11.4	5	76	13	59	19	54	19	6	1.66
13056--13133	22	3.5	22	94	1	138	19	48	21	10	1.78
14014--14137	63	2.0	63	82	9	155	16	27	29	26	1.97
14014--14137	31	4.0	32	72	12	80	16	27	29	26	1.97
16842--16897	3	18.3	3	96	3	103	33	0	0	66	0.92
16846--16906	9	7.4	8	89	10	72	34	0	0	65	0.93
21294--21367	29	2.6	29	86	4	96	16	32	32	18	1.93
21460--21521	31	2.0	31	93	0	106	24	37	14	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23120--23154	16	2.1	17	89	5	54	54	0	0	45	0.99
29845--29934	21	4.3	21	83	5	110	31	28	17	22	1.97
29863--30001	21	6.8	20	77	14	79	26	24	19	29	1.98
29930--30002	20	3.6	20	75	17	87	21	21	20	35	1.96
29925--30006	41	2.0	41	97	0	155	23	21	20	34	1.97
30015--30072	21	2.8	21	94	0	98	20	22	29	27	1.99
32524--32564	21	2.0	21	85	9	57	36	17	17	29	1.92
35078--35127	21	2.4	21	93	0	82	22	22	28	28	1.99
46023--46126	51	2.0	51	100	0	208	44	9	24	22	1.82
46477--46605	33	3.9	33	96	0	231	19	11	50	18	1.77
46471--46614	66	2.2	66	89	0	225	19	12	50	18	1.78
50024--50139	60	1.9	60	82	3	144	32	25	6	34	1.83
50313--50442	60	2.2	60	84	5	165	55	6	7	30	1.53
50326--50422	29	3.3	28	70	8	68	55	6	6	31	1.49
51074--51344	136	2.0	137	92	0	454	40	12	8	38	1.73
51814--51886	32	2.3	32	90	4	112	26	0	26	47	1.52
51857--51921	33	2.0	33	84	0	85	36	3	20	40	1.68
60214--60370	21	7.6	20	85	7	163	40	21	22	15	1.90
60214--60368	42	3.7	42	83	5	181	40	21	22	15	1.90
62949--63043	6	15.2	6	72	23	63	75	0	16	7	1.01
62928--63020	12	7.8	11	79	12	69	76	0	18	5	0.97
62958--63020	17	3.6	17	78	8	56	80	0	14	4	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62934--63021	25	3.6	24	73	11	72	76	0	17	6	1.00
63013--63042	16	1.9	16	93	6	53	66	0	20	13	1.24
64293--64701	128	3.2	127	89	2	599	35	15	26	22	1.94
64348--64763	128	3.3	126	82	7	380	36	15	25	21	1.93
65450--65715	36	7.4	36	84	2	302	36	22	19	20	1.95
65450--65715	108	2.5	108	83	3	354	36	22	19	20	1.95
66085--66424	51	6.5	52	82	8	379	33	16	23	25	1.96
66086--66394	105	3.0	102	83	7	388	34	17	24	23	1.95
66191--66736	55	10.1	55	80	8	386	30	15	25	27	1.96
66414--66712	163	1.8	163	92	1	510	29	15	27	27	1.96
76690--76938	31	8.0	31	94	0	419	38	21	18	20	1.93
77471--77513	20	2.1	21	87	8	63	32	11	6	48	1.66
77477--77523	20	2.2	20	85	7	58	36	12	6	44	1.68
77886--77927	22	2.0	21	90	4	66	7	28	38	26	1.82
82418--82450	16	2.1	16	88	11	50	48	6	0	45	1.27
83212--83246	15	2.3	15	90	0	52	20	17	54	8	1.68
87810--87859	20	2.6	19	87	3	64	24	24	20	32	1.98
87811--87859	19	2.5	20	86	3	64	24	24	18	32	1.97
90888--90960	20	3.6	20	74	3	74	41	27	20	10	1.86
90883--90975	41	2.3	41	92	0	150	38	27	17	16	1.91
91138--91196	31	1.9	31	85	0	82	40	10	0	49	1.37
91200--91224	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91997--92046	2	25.0	2	100	0	100	50	0	0	50	1.00
92506--92564	21	2.8	21	75	10	57	22	0	28	49	1.50
93255--93279	12	2.1	12	100	0	50	16	0	24	60	1.36
94872--94902	2	15.5	2	100	0	62	48	0	0	51	1.00
94909--95018	31	3.6	30	81	7	127	41	2	10	44	1.54
95452--95507	12	4.7	12	79	0	58	46	14	14	25	1.82
97888--97931	18	2.5	17	82	17	54	43	0	0	56	0.99
100529--100579	23	2.2	23	82	6	68	45	19	11	23	1.83
104645--104723	20	4.0	20	77	12	81	45	6	7	40	1.58
106264--106378	58	2.0	60	84	3	153	37	13	17	32	1.88
113652--113685	2	17.0	2	100	0	68	50	0	0	50	1.00
114976--115018	20	2.3	19	84	11	61	25	30	6	37	1.82
137206--137263	30	2.0	29	93	3	98	53	5	13	27	1.61

Tables:   1

The End!