Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001644.1 Hibiscus syriacus cultivar Beakdansim tig00003293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121710
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:458 original size:22 final size:22
Alignment explanation
Indices: 433--487 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
423 GCTATCACAT
433 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
455 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
477 CAAACCTTTGA
1 CAAACCTTTGA
488 CCAACCAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:918 original size:18 final size:20
Alignment explanation
Indices: 895--934 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
885 TCAACATCAA
*
895 ATATTGGGGCAT-TTT-TGG
1 ATATTGAGGCATCTTTGTGG
913 ATATTGAGGCATCTTTGTGG
1 ATATTGAGGCATCTTTGTGG
933 AT
1 AT
935 TCAACATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 3 0.16
20 5 0.26
ACGTcount: A:0.20, C:0.07, G:0.30, T:0.42
Consensus pattern (20 bp):
ATATTGAGGCATCTTTGTGG
Found at i:1438 original size:36 final size:36
Alignment explanation
Indices: 1397--1673 Score: 276
Period size: 36 Copynumber: 8.0 Consensus size: 36
1387 ACTAGAAGAG
1397 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
1433 TTTTGTCTCTCTTGAGACAG-TTCTCTTGAAAC-AA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * *
1467 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1503 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * * * *
1539 ------ATAT-TTGA-ATATGTTTTCTTTGAAACAAA
1 TTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAACAAA
* * ** * *
1568 TTTCGTCTCCCTTGAG---GTTTCTTTTGGAACTAAG
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAA
*
1602 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
1637 TTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTT-GTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1674 ATCTTTGAAT
Statistics
Matches: 197, Mismatches: 27, Indels: 33
0.77 0.11 0.13
Matches are distributed among these distances:
28 2 0.01
29 19 0.10
30 2 0.01
33 11 0.06
34 36 0.18
35 27 0.14
36 86 0.44
37 14 0.07
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.41
Consensus pattern (36 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:1489 original size:70 final size:70
Alignment explanation
Indices: 1398--1672 Score: 275
Period size: 70 Copynumber: 4.0 Consensus size: 70
1388 CTAGAAGAGT
* *
1398 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG-TTCTCTTGA
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
1462 AACAA
66 AACAA
*
1467 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 TTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1532 AAACAA
65 AAACAA
** * * * * * **
1538 ----AATAT-TTGA-ATATGTTTTCTTTGAAACAAATTTCGTCTCCCTTGAG---GTTTCTTTTG
1 TTTGTCTATCTTGAGACA-GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
*
1594 GAACTAA
65 AAAC-AA
* * *
1601 GTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCT
1 --TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTT-GTCTCTCTTGAGACAGTTTCCCT
1665 TGAAACAA
63 TGAAACAA
1673 AATCTTTGAA
Statistics
Matches: 163, Mismatches: 27, Indels: 29
0.74 0.12 0.13
Matches are distributed among these distances:
62 11 0.07
63 2 0.01
64 2 0.01
65 32 0.20
66 3 0.02
69 10 0.06
70 75 0.46
71 15 0.09
72 2 0.01
73 11 0.07
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.41
Consensus pattern (70 bp):
TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
AACAA
Found at i:1665 original size:135 final size:133
Alignment explanation
Indices: 1423--1718 Score: 364
Period size: 135 Copynumber: 2.2 Consensus size: 133
1413 ACAGTTTCCC
* *
1423 TTGAAACAAATTTTGTCTCTCTTGAGACAGTTCTCTTGAAACAATTTCGTCTATCTTGAGACAGT
1 TTGAAACAAATTTCGTCTCCCTTGAG--AGTTCTCTTGAAACAATTTCGTCTATCTTGAGACAGT
*
1488 TTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
64 TTCCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
1553 TTTCT
129 TTTCT
* * * *
1558 TTGAAACAAATTTCGTCTCCCTTGAG-GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 TTGAAACAAATTTCGTCTCCCTTGAGAG-TTCTCTTGAAAC-AA-TTTCGTCTATCTTGAGACAG
* * * *
1622 TTTCTCTTGAAA-CAATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATTT
63 TTTCCCTTGAAATAAATTTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATAT
* * *
1686 ATTTCCC
127 GTTTTCT
* * *
1693 CTAAAACAAATTTTGTCT-CCTTGAGA
1 TTGAAACAAATTTCGTCTCCCTTGAGA
1719 CAATTACTCT
Statistics
Matches: 139, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
132 1 0.01
133 10 0.07
134 15 0.11
135 113 0.81
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.41
Consensus pattern (133 bp):
TTGAAACAAATTTCGTCTCCCTTGAGAGTTCTCTTGAAACAATTTCGTCTATCTTGAGACAGTTT
CCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTT
TCT
Found at i:1733 original size:64 final size:67
Alignment explanation
Indices: 1631--1787 Score: 187
Period size: 66 Copynumber: 2.4 Consensus size: 67
1621 GTTTCTCTTG
* * * **
1631 AAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTG-AA-ACAAAATCTTTGAATTTATTTCCC
1 AAACAAATTTT-GTCTACCTTGAGACAATTACCCTTGAAACACAAAATCTTCAAATTTATTTCCC
1693 CTA
65 CTA
* *
1696 AAACAAATTTTGTCT-CCTTGAGACAATTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTTGTCTACCTTGAGACAATTACCCTTGAAACACAAAATCTTCAAATTTATTTCCCC
1760 TA
66 TA
* *
1762 AAACATAATTTTGTTTCCCTTGAGAC
1 AAACA-AATTTTGTCTACCTTGAGAC
1788 CGTTTCTCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
64 16 0.20
65 10 0.13
66 35 0.44
67 9 0.11
68 9 0.11
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (67 bp):
AAACAAATTTTGTCTACCTTGAGACAATTACCCTTGAAACACAAAATCTTCAAATTTATTTCCCC
TA
Found at i:2633 original size:105 final size:105
Alignment explanation
Indices: 2398--3054 Score: 893
Period size: 104 Copynumber: 6.3 Consensus size: 105
2388 GCCATCCGCG
* * * * * *
2398 ATTTCAACTCCACGACGGAGGATATCGTGGTACTCGAGACAACACAAGTTCAACTTCACAACGAA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * *
2463 GGGACGGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
63 GGGACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCCA
*
2507 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * *
2572 ACCGATGTTTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* *
2612 ATTTCAACTTCACAACAAAGGATATTGGACTTCAGACAACGCAAGTTC-ACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
2676 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
*
2716 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
2781 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCATAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
2821 ATTTCAACTTCACAACGAA-GATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG-AGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * **
2884 ACCGCTTCTTGTCAACAA-AA-TT-TC-A-TTCAGATTCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* * *
2919 ATTTTCAACTTCACAACGAAGGATATTGGACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGG
1 A-TTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * * * *
2983 GACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAGAGCCA
65 GACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCCA
* *
3025 A-TTCAACTTCACGACGGAGGATATTGGACT
1 ATTTCAACTTCACAACGAAGGATATTGGACT
3055 TTGAACAATG
Statistics
Matches: 498, Mismatches: 40, Indels: 25
0.88 0.07 0.04
Matches are distributed among these distances:
98 7 0.01
99 39 0.08
100 34 0.07
101 4 0.01
102 4 0.01
103 23 0.05
104 163 0.33
105 145 0.29
106 54 0.11
107 3 0.01
109 22 0.04
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
Found at i:2724 original size:209 final size:209
Alignment explanation
Indices: 2398--3055 Score: 895
Period size: 209 Copynumber: 3.2 Consensus size: 209
2388 GCCATCCGCG
* * * * *
2398 ATTTCAACTCCACGACGGAGGATATCGTGGTAC-TCGAGACAACACAAGTTCAACTTCACAACGA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTTC-AGACAACGCAAGTTCAACTTCACGACGA
* *
2462 AGGGACGGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAG
62 AGGGACCGCTGCTTGTCAAC-AACAACTTCTCAA-TTCAGAGCCAATTTCAACTTCACAACGAAG
* * *
2527 GATATTGGACTCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGATGTTTGTCAACAACA
125 GATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACA
*
2592 ACTTCTCAATTTCAGAGCCA
190 ACTTCCCAATTTCAGAGCCA
*
2612 ATTTCAACTTCACAACAAAGGATATTGGACTTCAGACAACGCAAGTTC-ACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
2676 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATAT
66 ACCGCTGCTTGTCAACAACAACTTCTCAAT-TCAGAGCCAATTTCAACTTCACAACGAAGGATAT
*
2741 TGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTC
130 TGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTC
* *
2806 CCAATCTCATAGCCA
195 CCAATTTCAGAGCCA
*
2821 ATTTCAACTTCACAACGAA-GATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG-AGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* **
2884 ACCGCTTCTTGTCAACAA-AA-TT-TC-ATTCAGATTCAATTTTCAACTTCACAACGAAGGATAT
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTCAGAGCCAA-TTTCAACTTCACAACGAAGGATAT
* * * * * *
2945 TGGACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTT
130 TGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTT
* *
3009 CCCGATTCCAGAGCCA
194 CCCAATTTCAGAGCCA
* *
3025 A-TTCAACTTCACGACGGAGGATATTGGACTT
1 ATTTCAACTTCACAACGAAGGATATTGGACTT
3056 TGAACAATGC
Statistics
Matches: 402, Mismatches: 36, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
203 61 0.15
204 68 0.17
205 1 0.00
206 2 0.00
207 2 0.00
208 49 0.12
209 148 0.37
210 29 0.07
211 16 0.04
212 5 0.01
214 21 0.05
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (209 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCTCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCC
CAATTTCAGAGCCA
Found at i:3639 original size:34 final size:36
Alignment explanation
Indices: 3595--3696 Score: 172
Period size: 34 Copynumber: 2.9 Consensus size: 36
3585 TTTCGTCCTA
3595 CTAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
*
3630 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
3665 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
3697 GTTATACTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
34 30 0.48
35 3 0.05
37 29 0.47
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
Found at i:4022 original size:22 final size:24
Alignment explanation
Indices: 3992--4036 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
3982 TTTTCTTTTT
3992 TTTTCATGTAATTT-TTTTTTACA
1 TTTTCATGTAATTTCTTTTTTACA
*
4015 TTTT-ATGTATTTTCTTTTTTAC
1 TTTTCATGTAATTTCTTTTTTAC
4037 TTTAGTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.18, C:0.09, G:0.04, T:0.69
Consensus pattern (24 bp):
TTTTCATGTAATTTCTTTTTTACA
Found at i:4143 original size:8 final size:8
Alignment explanation
Indices: 4132--4219 Score: 56
Period size: 8 Copynumber: 10.8 Consensus size: 8
4122 TATATATTAC
4132 TTTTTTAT
1 TTTTTTAT
4140 TTTTTTAT
1 TTTTTTAT
4148 TTTATATATAT
1 TTT-T-T-TAT
4159 TATTTTTA-
1 T-TTTTTAT
*
4167 CTTTTTA-
1 TTTTTTAT
*
4174 -TTATTAT
1 TTTTTTAT
4181 TTTATTTAT
1 TTT-TTTAT
*
4190 TTGTTTAT
1 TTTTTTAT
* *
4198 TTCTATAT
1 TTTTTTAT
*
4206 TTTTTTCT
1 TTTTTTAT
4214 TTTTTT
1 TTTTTT
4220 TTCTATATTA
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
6 5 0.08
7 6 0.09
8 35 0.55
9 9 0.14
10 2 0.03
11 5 0.08
12 2 0.03
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.77
Consensus pattern (8 bp):
TTTTTTAT
Found at i:4159 original size:19 final size:17
Alignment explanation
Indices: 4132--4187 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 17
4122 TATATATTAC
4132 TTTT-TTATTTTTTTAT
1 TTTTATTATTTTTTTAT
4148 TTTATATATATTATTTTTACT
1 TTT-TAT-TATT-TTTTTA-T
*
4169 TTTTATTATTATTTTAT
1 TTTTATTATTTTTTTAT
4186 TT
1 TT
4188 ATTTGTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
16 3 0.09
17 4 0.12
18 6 0.18
19 8 0.24
20 9 0.26
21 4 0.12
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTATTATTTTTTTAT
Found at i:4164 original size:22 final size:20
Alignment explanation
Indices: 4136--4191 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 20
4126 TATTACTTTT
4136 TTATTTTTTTA-TTTTA-TA
1 TTATTTTTTTATTTTTATTA
4154 TATATTATTTTTACTTTTTATTA
1 T-TATT-TTTTTA-TTTTTATTA
4177 TTATTTTATTTATTT
1 TTATTTT-TTTATTT
4192 GTTTATTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
18 1 0.03
19 4 0.12
20 6 0.19
21 5 0.16
22 13 0.41
23 3 0.09
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (20 bp):
TTATTTTTTTATTTTTATTA
Found at i:4164 original size:28 final size:31
Alignment explanation
Indices: 4120--4178 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
4110 TATATATATA
4120 TATATATATTACTTTTTTA-TTTTT-TTATTT
1 TATATATATTAC-TTTTTACTTTTTATTATTT
4150 TATATATATTA-TTTTTACTTTTTATTATT
1 TATATATATTACTTTTTACTTTTTATTATT
4179 ATTTTATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 6 0.22
29 5 0.19
30 16 0.59
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.71
Consensus pattern (31 bp):
TATATATATTACTTTTTACTTTTTATTATTT
Found at i:4176 original size:46 final size:45
Alignment explanation
Indices: 4126--4217 Score: 107
Period size: 46 Copynumber: 2.0 Consensus size: 45
4116 TATATATATA
*
4126 TATTACTT-TTTTATTTTTTTATTT-TATATATATTATTTTTACTTTT
1 TATTA-TTATTTTATTTATTTATTTATATATATATT-TTTTT-CTTTT
* * *
4172 TATTATTATTTTATTTATTTGTTTATTTCTATATTTTTTTCTTTT
1 TATTATTATTTTATTTATTTATTTATATATATATTTTTTTCTTTT
4217 T
1 T
4218 TTTTCTATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
45 8 0.20
46 24 0.60
47 8 0.20
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (45 bp):
TATTATTATTTTATTTATTTATTTATATATATATTTTTTTCTTTT
Found at i:4216 original size:45 final size:43
Alignment explanation
Indices: 4154--4285 Score: 106
Period size: 45 Copynumber: 2.9 Consensus size: 43
4144 TTATTTTATA
4154 TATATTATTTTTACTTTTTATTATTATTTTATTTATTTGTTTATTT
1 TATATT-TTTTT-CTTTTT-TTATTATTTTATTTATTTGTTTATTT
* * * *
4200 CTATATTTTTTTCTTTTTTTTTCTATATTATTTTACTT-ATTATTT
1 -TATATTTTTTTCTTTTTTTAT-TATTTTA-TTTATTTGTTTATTT
* * *
4245 TATCTTTGTTTTCTTTATCTTA-TCTTTTATTTAATTTGTTT
1 TATATTT-TTTTCTTT-TTTTATTATTTTATTT-ATTTGTTT
4286 TCTCTTTATT
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
43 3 0.04
44 17 0.25
45 28 0.41
46 14 0.21
47 6 0.09
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (43 bp):
TATATTTTTTTCTTTTTTTATTATTTTATTTATTTGTTTATTT
Found at i:4224 original size:22 final size:22
Alignment explanation
Indices: 4178--4260 Score: 69
Period size: 22 Copynumber: 3.6 Consensus size: 22
4168 TTTTTATTAT
*
4178 TATTTTATTTATTTGTTTATTTCTA
1 TATTTT-TTTCTTT-TTT-TTTCTA
4203 TATTTTTTTCTTTTTTTTTCTA
1 TATTTTTTTCTTTTTTTTTCTA
* * *
4225 TATTATTTTACTTATTATTT-TA
1 TATT-TTTTTCTTTTTTTTTCTA
*
4247 TCTTTGTTTTCTTT
1 TATTT-TTTTCTTT
4261 ATCTTATCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
21 1 0.02
22 21 0.43
23 15 0.31
24 6 0.12
25 6 0.12
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (22 bp):
TATTTTTTTCTTTTTTTTTCTA
Found at i:4229 original size:50 final size:49
Alignment explanation
Indices: 4143--4240 Score: 110
Period size: 50 Copynumber: 2.0 Consensus size: 49
4133 TTTTTATTTT
4143 TTTATTTTATATATATTATTTTTACTTTTTATTATTATTTTATTTATTTG
1 TTTATTTTATATATATTATTTTTACTTTTTA-TATTATTTTATTTATTTG
* ** *
4193 TTTATTTCTATAT-T-TTTTTCTTTTTTTTTCTATATTATTTTACTTATT
1 TTTATTT-TATATATATTATT-TTTACTTTT-TATATTATTTTATTTATT
4241 ATTTTATCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
49 4 0.10
50 30 0.73
51 7 0.17
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.73
Consensus pattern (49 bp):
TTTATTTTATATATATTATTTTTACTTTTTATATTATTTTATTTATTTG
Found at i:8347 original size:37 final size:37
Alignment explanation
Indices: 8305--8381 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
8295 TTGCCATGTC
*
8305 CATATGAAACAATGACAACTCGTCAATTACCAATTTT
1 CATATGAAACAATGACAACTAGTCAATTACCAATTTT
*
8342 CATATGAAACAATGGCAACTAGTCAATTACCAATTTT
1 CATATGAAACAATGACAACTAGTCAATTACCAATTTT
8379 CAT
1 CAT
8382 CCAAACAGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (37 bp):
CATATGAAACAATGACAACTAGTCAATTACCAATTTT
Found at i:18902 original size:2 final size:2
Alignment explanation
Indices: 18885--18936 Score: 86
Period size: 2 Copynumber: 25.5 Consensus size: 2
18875 GGAAAACAAT
*
18885 TA TA TT TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18928 TA TA TA TA T
1 TA TA TA TA T
18937 GTTTTAAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 45 0.96
3 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:27816 original size:18 final size:18
Alignment explanation
Indices: 27793--27841 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
27783 TTAAGGAGTG
27793 GTCCTTCGGGACATAGTA
1 GTCCTTCGGGACATAGTA
* *
27811 GTCCTTCGAGACATAGTG
1 GTCCTTCGGGACATAGTA
27829 GTCCTTCGGGACA
1 GTCCTTCGGGACA
27842 AATATACAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (18 bp):
GTCCTTCGGGACATAGTA
Found at i:28264 original size:21 final size:21
Alignment explanation
Indices: 28238--28277 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
28228 TTAACTATGG
28238 AAAAGG-TATATAAATAAGTAA
1 AAAAGGATAT-TAAATAAGTAA
*
28259 AAAAGGATATTAGATAAGT
1 AAAAGGATATTAAATAAGT
28278 TGTGTAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.25
Consensus pattern (21 bp):
AAAAGGATATTAAATAAGTAA
Found at i:33287 original size:3 final size:3
Alignment explanation
Indices: 33274--33323 Score: 68
Period size: 3 Copynumber: 17.0 Consensus size: 3
33264 TTTTTTATCG
33274 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
*
33318 ATA TTA
1 TTA TTA
33324 CATTTTACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.83
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:38994 original size:20 final size:20
Alignment explanation
Indices: 38965--39006 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
38955 ACATTCTATC
*
38965 TCTTTGAGACCTTGAAATAT
1 TCTTTGAGACCTTGAAACAT
*
38985 TCTTTTAGACCTTGAAACAT
1 TCTTTGAGACCTTGAAACAT
39005 TC
1 TC
39007 CCCTCTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (20 bp):
TCTTTGAGACCTTGAAACAT
Found at i:39695 original size:13 final size:13
Alignment explanation
Indices: 39661--39697 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
39651 GAGAAAAGAG
39661 AAAAATC-AAAGC
1 AAAAATCAAAAGC
39673 AAAAATCAAAAGC
1 AAAAATCAAAAGC
39686 AAAGAA-CAAAAG
1 AAA-AATCAAAAG
39698 AGGACAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.30
13 14 0.61
14 2 0.09
ACGTcount: A:0.70, C:0.14, G:0.11, T:0.05
Consensus pattern (13 bp):
AAAAATCAAAAGC
Found at i:40879 original size:12 final size:12
Alignment explanation
Indices: 40862--40918 Score: 66
Period size: 12 Copynumber: 4.9 Consensus size: 12
40852 CTCGAGAAAA
40862 ACATACAT-CAAC
1 ACATACATAC-AC
*
40874 ACATACATACAT
1 ACATACATACAC
*
40886 ACATACATACAT
1 ACATACATACAC
40898 ACATACAT--AC
1 ACATACATACAC
40908 ACATACATACA
1 ACATACATACA
40919 TGATACATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
10 9 0.22
12 30 0.75
13 1 0.03
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (12 bp):
ACATACATACAC
Found at i:40881 original size:4 final size:4
Alignment explanation
Indices: 40874--40919 Score: 78
Period size: 4 Copynumber: 12.0 Consensus size: 4
40864 ATACATCAAC
40874 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
40920 GATACATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
4 38 0.95
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:41600 original size:36 final size:36
Alignment explanation
Indices: 41555--41639 Score: 109
Period size: 36 Copynumber: 2.4 Consensus size: 36
41545 ACAAAGTTGA
**
41555 TCTCACTTGAGATCGTTTTCTC-AAAAACAAACTTTG
1 TCTCACTTGAGA-CAATTTCTCTAAAAACAAACTTTG
* *
41591 TCTCGCTTGAGACAATTTCTCTAAAAACAAATTTTG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
*
41627 TCTCATTTGAGAC
1 TCTCACTTGAGAC
41640 TGTATCTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 7 0.17
36 35 0.83
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (36 bp):
TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
Found at i:41940 original size:27 final size:27
Alignment explanation
Indices: 41910--42060 Score: 162
Period size: 29 Copynumber: 5.4 Consensus size: 27
41900 TTAAAGACAA
41910 TTTCTTTTGAAAAAAATCTTTGAGTTT
1 TTTCTTTTGAAAAAAATCTTTGAGTTT
*
41937 TTTCCTCTTG-AAAAAATCTTTGAGTTT
1 TTT-CTTTTGAAAAAAATCTTTGAGTTT
* *
41964 GTTCCTTTTGAATAAAAATCTTGGAGTTT
1 -TTTCTTTTGAA-AAAAATCTTTGAGTTT
* *
41993 GTTCCTTTTGAATAAAAATCTTTGAGTTG
1 -TTTCTTTTGAA-AAAAATCTTTGAGTTT
* *
42022 TTTCGTTTG-AAAAAATCTTTGAGTCTA
1 TTTCTTTTGAAAAAAATCTTTGAGT-TT
*
42049 TTTATTTTGAAA
1 TTTCTTTTGAAA
42061 CAAAGTTTTG
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
26 14 0.13
27 34 0.32
28 17 0.16
29 42 0.39
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (27 bp):
TTTCTTTTGAAAAAAATCTTTGAGTTT
Found at i:41980 original size:29 final size:28
Alignment explanation
Indices: 41913--42045 Score: 182
Period size: 29 Copynumber: 4.8 Consensus size: 28
41903 AAGACAATTT
*
41913 CTTTTGAAAAAAATCTTTGAGTTTTTTC
1 CTTTTGAAAAAAATCTTTGAGTTTGTTC
*
41941 CTCTTG-AAAAAATCTTTGAGTTTGTTC
1 CTTTTGAAAAAAATCTTTGAGTTTGTTC
*
41968 CTTTTGAATAAAAATCTTGGAGTTTGTTC
1 CTTTTGAA-AAAAATCTTTGAGTTTGTTC
*
41997 CTTTTGAATAAAAATCTTTGAG-TTGTTT
1 CTTTTGAA-AAAAATCTTTGAGTTTGTTC
*
42025 CGTTTG-AAAAAATCTTTGAGT
1 CTTTTGAAAAAAATCTTTGAGT
42046 CTATTTATTT
Statistics
Matches: 95, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
26 13 0.14
27 26 0.27
28 16 0.17
29 40 0.42
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.46
Consensus pattern (28 bp):
CTTTTGAAAAAAATCTTTGAGTTTGTTC
Found at i:41998 original size:56 final size:56
Alignment explanation
Indices: 41913--42045 Score: 182
Period size: 56 Copynumber: 2.4 Consensus size: 56
41903 AAGACAATTT
*
41913 CTTTTGAAAAAAATCTTTGAGTTTTTTCCTCTTG-A-AAAAATCTTTGAGTTTGTTC
1 CTTTTGAAAAAAATCTTTGAGTTTGTTCCTCTTGAATAAAAATCTTTGAG-TTGTTC
* * *
41968 CTTTTGAATAAAAATCTTGGAGTTTGTTCCTTTTGAATAAAAATCTTTGAGTTGTTT
1 CTTTTGAA-AAAAATCTTTGAGTTTGTTCCTCTTGAATAAAAATCTTTGAGTTGTTC
*
42025 CGTTTG-AAAAAATCTTTGAGT
1 CTTTTGAAAAAAATCTTTGAGT
42046 CTATTTATTT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
55 21 0.30
56 24 0.35
57 11 0.16
58 13 0.19
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.46
Consensus pattern (56 bp):
CTTTTGAAAAAAATCTTTGAGTTTGTTCCTCTTGAATAAAAATCTTTGAGTTGTTC
Found at i:42173 original size:29 final size:29
Alignment explanation
Indices: 42140--42246 Score: 90
Period size: 30 Copynumber: 3.4 Consensus size: 29
42130 TGAGACAATT
42140 TTTTGAAACAAAAATCTTTGAGTTTGTTC
1 TTTTGAAACAAAAATCTTTGAGTTTGTTC
* * *
42169 TTTTGAAACAAAATTTTGTCTCTTAAGATAAT-TTC
1 TTTTGAAACAAAA----ATCT-TTGAG-T-TTGTTC
42204 TTTTGAAACAAAAATCTTTGAGTTTGTTTC
1 TTTTGAAACAAAAATCTTTGAGTTTG-TTC
* *
42234 TTTGGAAGCAAAA
1 TTTTGAAACAAAA
42247 TTTTGTCTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
28 1 0.02
29 14 0.23
30 18 0.30
31 3 0.05
33 3 0.05
34 4 0.07
35 17 0.28
36 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (29 bp):
TTTTGAAACAAAAATCTTTGAGTTTGTTC
Found at i:42282 original size:65 final size:67
Alignment explanation
Indices: 42109--42299 Score: 270
Period size: 64 Copynumber: 3.0 Consensus size: 67
42099 CTCTGAGTCT
* * *
42109 GAAACAAAGTTTTGTCTCTCTTGAGACAA-TT-TTTTGAAACAAAAATCTTTGAGTTTG-TTCTT
1 GAAACAAAATTTTGTCTCTCTTAAGATAATTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCTT
*
42171 TT
66 TG
42173 GAAACAAAATTTTG--TCTCTTAAGATAATTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCTT
1 GAAACAAAATTTTGTCTCTCTTAAGATAATTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCTT
42236 TG
66 TG
* * *
42238 GAAGCAAAATTTTGTCTCTCTTAAGATAATTTCTTTTG-AA-AAAAATCTTTGAATCTGTTTCT
1 GAAACAAAATTTTGTCTCTCTTAAGATAATTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCT
42300 CTTAAAATGA
Statistics
Matches: 115, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
62 11 0.10
63 2 0.02
64 39 0.34
65 39 0.34
66 2 0.02
67 22 0.19
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (67 bp):
GAAACAAAATTTTGTCTCTCTTAAGATAATTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCTT
TG
Found at i:42568 original size:120 final size:118
Alignment explanation
Indices: 42400--42621 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 118
42390 TTAACAAAAT
* * *
42400 CATCTTTGAGTCTATTTCTTTAAAAACAAATGTTGTCTCTCTTGAGACAGTTTCTAATTAAAAAC
1 CATCTTTGAGTCTATTTCTTTAAAAACAAATGTTGTATCTCTTAAGACAATTTCT-ATTAAAAA-
42465 TAA-CTTTTGAGATTGTTTCATTTGAAAC-AAATTTGGTCTTACTTAAGATGTAATC
64 -AATC-TTTGAGATTGTTTCATTTGAAACAAAATTTGGTCTTACTTAAGATGTAATC
** * *
42520 CATCTTTGAGTCTATTTCTTTTGAAACAAAAT-TT-TATCTCTTAAAGACAATTTCTTTTGAAAA
1 CATCTTTGAGTCTATTTCTTTAAAAAC-AAATGTTGTATCTCTT-AAGACAATTTCTATTAAAAA
* * *
42583 AATCTTTGAGTTTGTTTCCTTTGAAACAAAATTTTGTCT
64 AATCTTTGAGATTGTTTCATTTGAAACAAAATTTGGTCT
42622 CTCGAGACAA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
117 23 0.26
118 11 0.12
119 13 0.15
120 37 0.42
121 4 0.05
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (118 bp):
CATCTTTGAGTCTATTTCTTTAAAAACAAATGTTGTATCTCTTAAGACAATTTCTATTAAAAAAA
TCTTTGAGATTGTTTCATTTGAAACAAAATTTGGTCTTACTTAAGATGTAATC
Found at i:42623 original size:63 final size:62
Alignment explanation
Indices: 42521--42644 Score: 176
Period size: 63 Copynumber: 2.0 Consensus size: 62
42511 GATGTAATCC
* *
42521 ATCTTTGAGTCTATTTCTTTTGAAACAAAATTTTATCTCTTAAAGACAATTTCTTTTGAAAAA
1 ATCTTTGAGTCTATTTCCTTTGAAACAAAATTTTATCTC-TAAAGACAACTTCTTTTGAAAAA
* * * **
42584 ATCTTTGAGTTTGTTTCCTTTGAAACAAAATTTTGTCTCTCGAGACAACTTCTTTTGAAAA
1 ATCTTTGAGTCTATTTCCTTTGAAACAAAATTTTATCTCTAAAGACAACTTCTTTTGAAAA
42645 TACCCACATT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
62 19 0.35
63 35 0.65
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (62 bp):
ATCTTTGAGTCTATTTCCTTTGAAACAAAATTTTATCTCTAAAGACAACTTCTTTTGAAAAA
Found at i:42689 original size:40 final size:40
Alignment explanation
Indices: 42626--42705 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
42616 TTGTCTCTCG
*
42626 AGACAACTTCTTTTGAAAATACCCACATTTGAGATCGTTT
1 AGACAACTTCTTTTGAAAATACCCACATTGGAGATCGTTT
* * *
42666 AGACAATTTCTTTT-AAAACTACCCACCTTGGAGATTGTTT
1 AGACAACTTCTTTTGAAAA-TACCCACATTGGAGATCGTTT
42706 TTATTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (40 bp):
AGACAACTTCTTTTGAAAATACCCACATTGGAGATCGTTT
Found at i:42781 original size:31 final size:30
Alignment explanation
Indices: 42746--42806 Score: 70
Period size: 31 Copynumber: 2.0 Consensus size: 30
42736 GTTTCTCTAG
*
42746 AAATACAAA-ATCTTTGAGTTTGTTTCACTTA
1 AAATA-AAACATCTTTGAG-TCGTTTCACTTA
*
42777 AAATAAAACCATTTTTGAGTCGTTTCACTT
1 AAATAAAA-CATCTTTGAGTCGTTTCACTT
42807 GAAACATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 3 0.12
31 15 0.58
32 8 0.31
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (30 bp):
AAATAAAACATCTTTGAGTCGTTTCACTTA
Found at i:43153 original size:35 final size:37
Alignment explanation
Indices: 43087--43166 Score: 94
Period size: 35 Copynumber: 2.2 Consensus size: 37
43077 TGTTTCTTTG
* * *
43087 GAAACAAAATTTACCATCTTTGAATCTGTTTCCCTT-
1 GAAACAAAATTAAACATCTTTGAAACTGTTTCCCTTA
43123 GAAACAAAA-TAAACATCTTTGAGAAC-GTTTCCCTTA
1 GAAACAAAATTAAACATCTTTGA-AACTGTTTCCCTTA
*
43159 AAAACAAA
1 GAAACAAA
43167 TTTTGTCTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 20 0.53
36 18 0.47
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (37 bp):
GAAACAAAATTAAACATCTTTGAAACTGTTTCCCTTA
Found at i:43533 original size:43 final size:44
Alignment explanation
Indices: 43444--43729 Score: 171
Period size: 43 Copynumber: 6.6 Consensus size: 44
43434 TGGCCAGTAG
* * ** *
43444 TCCTCATCACATAGGAACCGTGTCAT-CCCCAG---ACCAGATC
1 TCCTCATCACGTAGGAGCCGTGTCATACCATAGATAACCAGACC
* *
43484 TCCTCATCACGTAGGAGTCGTGTCA-ACCATGGATAACCAG-CC
1 TCCTCATCACGTAGGAGCCGTGTCATACCATAGATAACCAGACC
* * * ** *
43526 GTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAAC
1 -TCCTCATCACGTAGGAGCCGTGTCAT-ACC-ATAGATAACCAGACC
* * * * ** *
43573 TCTTCATCACGTATGAGCCGTGCCATTCCCCAG---ACCAGATC
1 TCCTCATCACGTAGGAGCCGTGTCATACCATAGATAACCAGACC
43614 TCCTCATCACGTAGGAGCCGTGTCA-ACCATAGATAACCAG-CC
1 TCCTCATCACGTAGGAGCCGTGTCATACCATAGATAACCAGACC
* * * ** *
43656 GTCCTCATCACGTAGGAACCGTGTTATCACCTAAAGATGGCCAAGAAC
1 -TCCTCATCACGTAGGAGCCGTGTCAT-ACC-ATAGATAACC-AGACC
* **
43704 TCTTCATCACGTAGGAGAAGTGTCAT
1 TCCTCATCACGTAGGAGCCGTGTCAT
43730 CCCTCAATCA
Statistics
Matches: 185, Mismatches: 43, Indels: 29
0.72 0.17 0.11
Matches are distributed among these distances:
40 29 0.16
41 28 0.15
42 2 0.01
43 55 0.30
44 2 0.01
45 8 0.04
46 36 0.19
47 24 0.13
48 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (44 bp):
TCCTCATCACGTAGGAGCCGTGTCATACCATAGATAACCAGACC
Found at i:43663 original size:130 final size:129
Alignment explanation
Indices: 43430--43719 Score: 463
Period size: 130 Copynumber: 2.2 Consensus size: 129
43420 CATTATTCCT
* * * * *
43430 AAGATGGCCAGTAGTCCTCATCACATAGGAACCGTGTCATCCCCAGACCAGATCTCCTCATCACG
1 AAGATGGCCAGAACTCTTCATCACGTAGGAACCGTGCCATCCCCAGACCAGATCTCCTCATCACG
* * *
43495 TAGGAGTCGTGTCAACCATGGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTT
66 TAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
* * *
43559 TAGATGGCCAGAACTCTTCATCACGTATGAGCCGTGCCATTCCCCAGACCAGATCTCCTCATCAC
1 AAGATGGCCAGAACTCTTCATCACGTAGGAACCGTGCCA-TCCCCAGACCAGATCTCCTCATCAC
43624 GTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
65 GTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
43689 AAGATGGCCAAGAACTCTTCATCACGTAGGA
1 AAGATGGCC-AGAACTCTTCATCACGTAGGA
43720 GAAGTGTCAT
Statistics
Matches: 146, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
129 31 0.21
130 95 0.65
131 20 0.14
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (129 bp):
AAGATGGCCAGAACTCTTCATCACGTAGGAACCGTGCCATCCCCAGACCAGATCTCCTCATCACG
TAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
Found at i:43742 original size:130 final size:129
Alignment explanation
Indices: 43430--43768 Score: 457
Period size: 130 Copynumber: 2.6 Consensus size: 129
43420 CATTATTCCT
* * * * *
43430 AAGATGGCCAGTAGTCCTCATCACATAGGA-ACCGTGTCATCCCCAGACCAGATCTCCTCATCAC
1 AAGATGGCCAGAACTCTTCATCACGTAGGAGA-AGTGTCATCCCCAGACCAGATCTCCTCATCAC
* * *
43494 GTAGGAGTCGTGTCAACCATGGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTT
65 GTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
* * ** *
43559 TAGATGGCCAGAACTCTTCATCACGTATGAGCCGTGCCATTCCCCAGACCAGATCTCCTCATCAC
1 AAGATGGCCAGAACTCTTCATCACGTAGGAGAAGTGTCA-TCCCCAGACCAGATCTCCTCATCAC
43624 GTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
65 GTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
* * *
43689 AAGATGGCCAAGAACTCTTCATCACGTAGGAGAAGTGTCATCCCTCA-ATCAGATTTCCTCATTA
1 AAGATGGCC-AGAACTCTTCATCACGTAGGAGAAGTGTCATCCC-CAGACCAGATCTCCTCATCA
* * *
43753 TGTAGGAACCTTGTCA
64 CGTAGGAGCCGTGTCA
43769 CTTTTAGACG
Statistics
Matches: 184, Mismatches: 22, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
129 30 0.16
130 126 0.68
131 28 0.15
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (129 bp):
AAGATGGCCAGAACTCTTCATCACGTAGGAGAAGTGTCATCCCCAGACCAGATCTCCTCATCACG
TAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTA
Found at i:43981 original size:3 final size:3
Alignment explanation
Indices: 43967--44021 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
43957 TTTTTTATCG
*
43967 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA -TA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA -TTA
*
44013 TTA ATA TTA
1 TTA TTA TTA
44022 CATTTTACAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 2 0.04
3 37 0.82
4 6 0.13
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:43985 original size:15 final size:16
Alignment explanation
Indices: 43967--44021 Score: 78
Period size: 15 Copynumber: 3.6 Consensus size: 16
43957 TTTTTTATCG
*
43967 TTATTTTTATTA-TTA
1 TTATTATTATTATTTA
43982 TTATTATTATTATTTA
1 TTATTATTATTATTTA
43998 TTATTA-TATTATTTA
1 TTATTATTATTATTTA
*
44013 TTAATATTA
1 TTATTATTA
44022 CATTTTACAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 25 0.69
16 11 0.31
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATTATTATTATTTA
Found at i:45110 original size:19 final size:19
Alignment explanation
Indices: 45064--45110 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
45054 TCATTAATTA
*
45064 TATATTATGTTTGCTGATAT
1 TATATT-TGGTTGCTGATAT
45084 TATAATTTGGTTG-TGATATT
1 TAT-ATTTGGTTGCTGATA-T
45104 TATATTT
1 TATATTT
45111 ATTTCGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 9 0.38
20 12 0.50
21 3 0.12
ACGTcount: A:0.26, C:0.02, G:0.15, T:0.57
Consensus pattern (19 bp):
TATATTTGGTTGCTGATAT
Found at i:47888 original size:23 final size:21
Alignment explanation
Indices: 47862--47903 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
47852 ACATAATAAA
47862 TAATATTATTTATTATAAAAACT
1 TAATATTA-TTATT-TAAAAACT
47885 TAATATTATTATTTAAAAA
1 TAATATTATTATTTAAAAA
47904 TATTAGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 5 0.26
23 8 0.42
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TAATATTATTATTTAAAAACT
Found at i:48063 original size:21 final size:23
Alignment explanation
Indices: 48039--48085 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
48029 AGTATAAAAA
*
48039 TAAAAATATT-AT-ATTATATTT
1 TAAAAATATTAATAAATATATTT
*
48060 TAAAATTATTAATAAATATATTT
1 TAAAAATATTAATAAATATATTT
48083 TAA
1 TAA
48086 GGAATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 2 0.09
23 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TAAAAATATTAATAAATATATTT
Found at i:48100 original size:23 final size:22
Alignment explanation
Indices: 48039--48101 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 22
48029 AGTATAAAAA
* *
48039 TAAAAATA-TTATATTATATTT
1 TAAAATTATTTATAATATATTT
*
48060 TAAAATTATTAATAAATATATTT
1 TAAAATTATTTAT-AATATATTT
48083 TAAGGAATT-TTTATAATAT
1 TAA--AATTATTTATAATAT
48102 TATTAGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 3 0.09
23 16 0.47
24 4 0.12
25 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (22 bp):
TAAAATTATTTATAATATATTT
Found at i:48333 original size:23 final size:23
Alignment explanation
Indices: 48280--48346 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 23
48270 TATTGTAATG
* *
48280 ATATTATTATATATATTATTAAAA
1 ATATTAATAAATATATT-TTAAAA
*
48304 ATATTAATAAATATATTTTAAAT
1 ATATTAATAAATATATTTTAAAA
* *
48327 ATGTTAATAATTAATATTTT
1 ATATTAATAAAT-ATATTTT
48347 TATTAAGATG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 15 0.41
24 22 0.59
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (23 bp):
ATATTAATAAATATATTTTAAAA
Found at i:55331 original size:3 final size:3
Alignment explanation
Indices: 55323--55357 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
55313 AAACATCAAT
55323 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A-A ACA
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
55358 CTATTCCCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:63992 original size:64 final size:64
Alignment explanation
Indices: 63919--64081 Score: 233
Period size: 65 Copynumber: 2.5 Consensus size: 64
63909 CGGTGCACTA
* *
63919 AGTGTGCATCGATGCATCAAATGCATTCGATGTTTTGA-AAAAGCCTGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAA-CCCGAGTGCATCGATGCATGG
63983 TA-TGTGCATCGATGCATCAAATGCATTCGATGTTTTCATTAAAACCCGAGTGCATCGATGCATG
1 -AGTGTGCATCGATGCATCAAATGCATTCGATGTTTTCA-TAAAACCCGAGTGCATCGATGCATG
64047 G
64 G
* *
64048 AGAGTGCATCGATGCAT-AAACTACATTCGATGTT
1 AGTGTGCATCGATGCATCAAA-TGCATTCGATGTT
64082 CAATTTATTC
Statistics
Matches: 90, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
64 39 0.43
65 47 0.52
66 4 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (64 bp):
AGTGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCCGAGTGCATCGATGCATGG
Found at i:65075 original size:21 final size:20
Alignment explanation
Indices: 65032--65082 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
65022 CCTTACTCTT
65032 AATATCGATACCTCCACATC
1 AATATCGATACCTCCACATC
65052 AATATCGATACTACTCCA-ATC
1 AATATCGATAC--CTCCACATC
65073 AATATCGATA
1 AATATCGATA
65083 TTGTTAATCG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.38
21 13 0.45
22 5 0.17
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.27
Consensus pattern (20 bp):
AATATCGATACCTCCACATC
Found at i:66553 original size:30 final size:31
Alignment explanation
Indices: 66519--66578 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
66509 GGGTAAAATA
66519 TATG-TTTAGTACATAAACTATCAGTTTTTG
1 TATGTTTTAGTACATAAACTATCAGTTTTTG
* * *
66549 TATGTTTTAGTACCTAAACTTTTAGTTTTT
1 TATGTTTTAGTACATAAACTATCAGTTTTT
66579 TAAAACCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.52
Consensus pattern (31 bp):
TATGTTTTAGTACATAAACTATCAGTTTTTG
Found at i:67364 original size:3 final size:3
Alignment explanation
Indices: 67356--67387 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
67346 GATGTGACAT
67356 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67388 ATATATGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:70431 original size:24 final size:24
Alignment explanation
Indices: 70399--70452 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
70389 GAATCAATCC
70399 TGATTAGCAGTGGTCACTCATGTT
1 TGATTAGCAGTGGTCACTCATGTT
70423 TGATTAGCAGTGGTCACTCATGTT
1 TGATTAGCAGTGGTCACTCATGTT
70447 TGATTA
1 TGATTA
70453 AATGCACGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (24 bp):
TGATTAGCAGTGGTCACTCATGTT
Found at i:71161 original size:23 final size:23
Alignment explanation
Indices: 71135--71179 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
71125 TCAGACTTAA
*
71135 CTCGATTGAAGCTCAAACTCGAG
1 CTCGATTCAAGCTCAAACTCGAG
*
71158 CTCGATTCAAGCTCGAACTCGA
1 CTCGATTCAAGCTCAAACTCGA
71180 TTTCAAACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (23 bp):
CTCGATTCAAGCTCAAACTCGAG
Found at i:71167 original size:17 final size:18
Alignment explanation
Indices: 71147--71194 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
71137 CGATTGAAGC
*
71147 TCAAACTCGAGCTCGA-T
1 TCAAACTCGAACTCGATT
*
71164 TCAAGCTCGAACTCGATT
1 TCAAACTCGAACTCGATT
*
71182 TCAAACTTGAACT
1 TCAAACTCGAACT
71195 TTAAGTACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (18 bp):
TCAAACTCGAACTCGATT
Found at i:71275 original size:15 final size:16
Alignment explanation
Indices: 71255--71284 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
71245 TAGTGGATAC
71255 AAAATATTA-TATTTT
1 AAAATATTATTATTTT
71270 AAAATATTATTATTT
1 AAAATATTATTATTT
71285 CTTAACCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AAAATATTATTATTTT
Found at i:77439 original size:26 final size:28
Alignment explanation
Indices: 77409--77470 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 28
77399 GAAAGTTTTA
77409 AGCTC-GC-GAGTTTTCGAGTCGAGTCG
1 AGCTCTGCAGAGTTTTCGAGTCGAGTCG
*
77435 AGCTCTATTTCAGAGTTTTCGAGTCGAGTCG
1 AGCTC---TGCAGAGTTTTCGAGTCGAGTCG
77466 AGCTC
1 AGCTC
77471 AGCAATACTC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.17
30 1 0.03
31 24 0.80
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCTCTGCAGAGTTTTCGAGTCGAGTCG
Found at i:78231 original size:20 final size:20
Alignment explanation
Indices: 78137--78505 Score: 449
Period size: 20 Copynumber: 18.4 Consensus size: 20
78127 GATTTTCCAT
* ** *
78137 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
78157 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
78177 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78197 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
78217 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
78237 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78257 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78277 AATCGCAACGCGTATCCTTA
1 AATCGCAACGCGTATCCGTA
* *
78297 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
78317 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78337 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
78357 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78377 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
78397 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78417 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
78437 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
78457 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
78477 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
78497 AATCACAAC
1 AATCGCAAC
78506 ACTGAAATTT
Statistics
Matches: 303, Mismatches: 38, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
19 3 0.01
20 297 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:79218 original size:24 final size:24
Alignment explanation
Indices: 79179--79225 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
79169 AAATTTGGTC
79179 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
79203 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
79226 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:79417 original size:12 final size:12
Alignment explanation
Indices: 79400--79424 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79390 ATATAATCCT
79400 GAAGAAGAAAAA
1 GAAGAAGAAAAA
79412 GAAGAAGAAAAA
1 GAAGAAGAAAAA
79424 G
1 G
79425 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:81752 original size:19 final size:19
Alignment explanation
Indices: 81730--82055 Score: 405
Period size: 19 Copynumber: 18.4 Consensus size: 19
81720 CGGAAAATAC
*
81730 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
81749 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
81763 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
81783 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
81797 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81816 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
81835 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
81849 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81868 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
81887 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
81901 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
81920 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
81939 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
81958 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81977 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81996 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
82010 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
82029 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
82048 AATCGCAA
1 AATCGCAA
82056 CGAGATAATC
Statistics
Matches: 269, Mismatches: 12, Indels: 52
0.81 0.04 0.16
Matches are distributed among these distances:
14 50 0.19
15 3 0.01
16 13 0.05
17 12 0.04
18 4 0.01
19 174 0.65
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:81817 original size:33 final size:34
Alignment explanation
Indices: 81730--82055 Score: 321
Period size: 33 Copynumber: 9.2 Consensus size: 34
81720 CGGAAAATAC
* *
81730 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
81763 AATCGCAATGCGGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGATGAA
81797 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
81835 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
81868 AATCGCAATGCGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
81901 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
81939 AATCGCAATACGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
81977 AATCGCAATGCGAAATGAAAATCGCAACGA--AA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
82009 GAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 -AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
82048 AATCGCAA
1 AATCGCAA
82056 CGAGATAATC
Statistics
Matches: 257, Mismatches: 12, Indels: 43
0.82 0.04 0.14
Matches are distributed among these distances:
32 2 0.01
33 111 0.43
34 32 0.12
35 9 0.04
36 6 0.02
37 4 0.02
38 91 0.35
39 2 0.01
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCGCAACGATGAA
Found at i:81991 original size:161 final size:157
Alignment explanation
Indices: 81758--82077 Score: 552
Period size: 161 Copynumber: 2.0 Consensus size: 157
81748 AAATCCCAAC
*
81758 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
*
81823 ATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
66 ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
81888 ATCGCAACGAGAGAATCGCAATGCGAA
131 ATCGCAACGAGAGAATCGCAATGCGAA
*
81915 ATGAAAATCGCAATGC-GAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAAATGAAAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGC-A-ACG--A-GAAAATCGCAATGCGAAATGAAAA
81979 TCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAA
61 TCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAA
*
82044 TGAAAATCGCAACGAGATAATCGCAATGCGAA
126 TGAAAATCGCAACGAGAGAATCGCAATGCGAA
82076 AT
1 AT
82078 TATAAACGCA
Statistics
Matches: 154, Mismatches: 4, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
156 13 0.08
157 17 0.11
158 3 0.02
160 1 0.01
161 120 0.78
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (157 bp):
ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
ATCGCAACGAGAGAATCGCAATGCGAA
Found at i:82093 original size:52 final size:52
Alignment explanation
Indices: 81758--82077 Score: 550
Period size: 52 Copynumber: 6.0 Consensus size: 52
81748 AAATCCCAAC
81758 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
81811 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
81863 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
81915 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
81972 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
82024 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
82076 AT
1 AT
82078 TATAAACGCA
Statistics
Matches: 255, Mismatches: 7, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
52 184 0.72
53 18 0.07
54 3 0.01
55 3 0.01
56 2 0.01
57 45 0.18
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:82193 original size:19 final size:19
Alignment explanation
Indices: 82084--82185 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
82074 AAATTATAAA
82084 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
82103 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
82123 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
82139 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
82156 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
82175 CGCATTGCGAT
1 CGCATTGCGAT
82186 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:82311 original size:14 final size:14
Alignment explanation
Indices: 82292--82328 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
82282 CATCAATTAC
82292 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
82306 ACAAATCATCTTTT
1 ACAAATCAACTTTT
82320 ACAAATCAA
1 ACAAATCAA
82329 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:82340 original size:12 final size:12
Alignment explanation
Indices: 82323--82395 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
82313 ATCTTTTACA
82323 AATCAATTAAAC
1 AATCAATTAAAC
*
82335 AATCAA--AAATTG
1 AATCAATTAAA--C
**
82347 AATCAACTTTTAC
1 AATCAA-TTAAAC
82360 AAATCAATTAAAC
1 A-ATCAATTAAAC
*
82373 AATCAA-AAAAC
1 AATCAATTAAAC
82384 AATCAATTAAAC
1 AATCAATTAAAC
82396 TATTGAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
10 3 0.07
11 10 0.22
12 21 0.46
13 6 0.13
14 5 0.11
15 1 0.02
ACGTcount: A:0.58, C:0.16, G:0.01, T:0.25
Consensus pattern (12 bp):
AATCAATTAAAC
Found at i:82357 original size:38 final size:38
Alignment explanation
Indices: 82309--82381 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
82299 AACTTTTACA
*
82309 AATCATCTTTTACAAATCAATTAAACAATCAAAAATTG
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
82347 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
82382 ACAATCAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.29
Consensus pattern (38 bp):
AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
Found at i:84273 original size:14 final size:14
Alignment explanation
Indices: 84254--84310 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
84244 GCGAAATGAA
*
84254 AATCGCAACGACAG
1 AATCGCAACGAAAG
84268 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
84285 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
84301 AATCGCAACG
1 AATCGCAACG
84311 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:84281 original size:33 final size:33
Alignment explanation
Indices: 84235--84327 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
84225 GAGAAACCAA
*
84235 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
84268 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
84301 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
84328 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:84292 original size:19 final size:19
Alignment explanation
Indices: 84198--84332 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
84188 TAGTTTACTT
* *
84198 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
* **
84218 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
84237 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
84256 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
84270 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
84289 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
84303 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
84322 TCGCAATGCGA
1 TCGCAACGCGA
84333 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 46 0.48
20 11 0.12
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:84350 original size:19 final size:19
Alignment explanation
Indices: 84328--84456 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
84318 AAAATCGCAA
84328 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
84347 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
84361 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
84380 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
84394 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
84413 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
84432 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
84452 TGCGA
1 TGCGA
84457 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:84370 original size:33 final size:33
Alignment explanation
Indices: 84328--84419 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
84318 AAAATCGCAA
84328 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
84361 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
84394 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
84420 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:84659 original size:93 final size:93
Alignment explanation
Indices: 84500--84879 Score: 753
Period size: 93 Copynumber: 4.1 Consensus size: 93
84490 TTGAATGGAT
84500 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
84565 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
84593 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
84658 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
84686 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
84750 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
84778 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
84843 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
84871 AAATTTACT
1 AAATTTACT
84880 AAGCAATCTA
Statistics
Matches: 286, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.32
93 194 0.68
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:84813 original size:185 final size:186
Alignment explanation
Indices: 84500--84879 Score: 753
Period size: 185 Copynumber: 2.0 Consensus size: 186
84490 TTGAATGGAT
84500 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
84565 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
84630 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
84686 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
84750 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
84815 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
84871 AAATTTACT
1 AAATTTACT
84880 AAGCAATCTA
Statistics
Matches: 194, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
185 155 0.80
186 39 0.20
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:86601 original size:14 final size:14
Alignment explanation
Indices: 86582--86671 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
86572 TTGAAATGAA
86582 AATCGCAACGAGAG
1 AATCGCAACGAGAG
86596 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
86613 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
86629 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
86648 AATCGCAACGAGAG
1 AATCGCAACGAGAG
86662 AATCGCAACG
1 AATCGCAACG
86672 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:86619 original size:33 final size:33
Alignment explanation
Indices: 86574--86688 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
86564 TCTTTTGGTT
86574 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
86607 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
86640 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
86673 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
86689 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:86620 original size:19 final size:18
Alignment explanation
Indices: 86581--86693 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
86571 GTTGAAATGA
86581 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
86596 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
86613 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
86629 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
86646 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
86662 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
86679 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
86694 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:86724 original size:14 final size:14
Alignment explanation
Indices: 86705--86759 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
86695 TTTGGTTTCG
86705 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
86719 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
86738 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
86752 CGTTGCGA
1 CGTTGCGA
86760 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:86737 original size:33 final size:33
Alignment explanation
Indices: 86689--86759 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
86679 AAAATCGCAA
**
86689 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
86722 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
86755 TGCGA
1 TGCGA
86760 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:86767 original size:33 final size:33
Alignment explanation
Indices: 86700--86781 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
86690 GCGATTTTGG
***
86700 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
86733 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
86766 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
86782 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:86786 original size:20 final size:20
Alignment explanation
Indices: 86712--86800 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
86702 TCGCGTTGCG
86712 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
86732 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
86745 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
86765 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
86785 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
86801 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:86922 original size:33 final size:33
Alignment explanation
Indices: 86880--86950 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
86870 AATACTAACT
*
86880 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
86913 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
86946 TGAAA
1 TGAAA
86951 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:87184 original size:22 final size:22
Alignment explanation
Indices: 87132--87186 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
87122 TGGTTGTGAG
**
87132 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
87154 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
87176 GGATTTCTTCG
1 GGATTTCTTCG
87187 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:87357 original size:20 final size:20
Alignment explanation
Indices: 87332--87525 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
87322 CTTTAAATAT
87332 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
87352 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
87374 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
87393 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
87413 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
87433 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
87453 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
87473 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
87493 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
87513 CGCGTTGCGATTT
1 CGCGTTGCGATTT
87526 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:87519 original size:60 final size:60
Alignment explanation
Indices: 87332--87525 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
87322 CTTTAAATAT
**
87332 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
87393 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
87453 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
87513 CGCGTTGCGATTT
1 CGCGTTGCGATTT
87526 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:87542 original size:21 final size:20
Alignment explanation
Indices: 87518--87594 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
87508 ATATTCGCGT
87518 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
87539 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
87559 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
87581 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
87595 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:87605 original size:20 final size:20
Alignment explanation
Indices: 87580--87631 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
87570 AAGAATCGCG
*
87580 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
87600 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
87620 TTGCGATTCTGG
1 TTGCGATTCTGG
87632 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:88260 original size:14 final size:14
Alignment explanation
Indices: 88243--88273 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
88233 CTATAAATCA
88243 TAAAACTTAAACCC
1 TAAAACTTAAACCC
*
88257 TAAACCTTAAACCC
1 TAAAACTTAAACCC
88271 TAA
1 TAA
88274 CTTATAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAAACTTAAACCC
Found at i:90787 original size:207 final size:207
Alignment explanation
Indices: 90432--91260 Score: 1606
Period size: 207 Copynumber: 4.0 Consensus size: 207
90422 ATTGACGGTA
*
90432 TTATGAGCTGATCGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
1 TTATGAGCTGAACGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
90497 TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
66 TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
90562 GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
131 GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
90627 TCAAATGATTAT
196 TCAAATGATTAT
90639 TTATGAGCTGAACGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
1 TTATGAGCTGAACGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
90704 TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
66 TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
90769 GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
131 GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
90834 TCAAATGATTAT
196 TCAAATGATTAT
90846 TTATGAGCTGAACGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
1 TTATGAGCTGAACGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
90911 TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
66 TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
90976 GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
131 GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
91041 TCAAATGATTAT
196 TCAAATGATTAT
*
91053 TTATGAGCTGAACGTTAACCCGCTGATTGTGATACGATGAAATATGATCTCAAAATCTCAAAAGA
1 TTATGAGCTGAACGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
*
91118 TTATCATATCTAAGTTATCATGTTAACATCTAGCTTAGACAACTAACAA-TTTTTAATGAAAAAC
66 TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
* *
91182 GACTTTGGAACATAATGAATAGTCAGATGGTCATTTTGTAGGCGACTTTGGAACATAATGAATAG
131 GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
91247 TCAAATGATTAT
196 TCAAATGATTAT
91259 TT
1 TT
91261 TGTAACTTTT
Statistics
Matches: 617, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
206 92 0.15
207 525 0.85
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (207 bp):
TTATGAGCTGAACGTTAACCCGCTGATTGTGATATGATGAAATATGATCTCAAAATCTCAAAAGA
TTATCATATCTAAGTTATCATGTTAACGTCTAGCTTAGACAACTAACAATTTTTTAATGAAAAAC
GACTTTGGAACATAATGAATAGTCAGATGGCCATTTTGTAGACGACTTTGGAACATAATGAATAG
TCAAATGATTAT
Found at i:91242 original size:43 final size:43
Alignment explanation
Indices: 91181--91264 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
91171 TAATGAAAAA
* *
91181 CGACTTTGGAACATAATGAATAGTCAGATGGTCATTTTGTAGG
1 CGACTTTGGAACATAATGAATAGTCAAATGATCATTTTGTAGG
*
91224 CGACTTTGGAACATAATGAATAGTCAAATGATTATTTTGTA
1 CGACTTTGGAACATAATGAATAGTCAAATGATCATTTTGTA
91265 ACTTTTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (43 bp):
CGACTTTGGAACATAATGAATAGTCAAATGATCATTTTGTAGG
Found at i:93333 original size:24 final size:23
Alignment explanation
Indices: 93298--93348 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
93288 TACGAGGATG
93298 TAAAAATAAATAA-ATATATATTA
1 TAAAAATAAATAAGAT-TATATTA
93321 TAAAAATATAATAAGATTATATTA
1 TAAAAATA-AATAAGATTATATTA
93345 TAAA
1 TAAA
93349 CCTCGGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 8 0.31
24 16 0.62
25 2 0.08
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAAAATAAATAAGATTATATTA
Found at i:95377 original size:34 final size:34
Alignment explanation
Indices: 95334--95402 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
95324 TAAAATTTAA
*
95334 ATCATAAAATAAGATTAATTAATTCAACTAGCTT
1 ATCATAAAATAAGATTAATTAATTCAACTAACTT
* * *
95368 ATCATAAAATAAGATTCATTCATTCCACTAACTT
1 ATCATAAAATAAGATTAATTAATTCAACTAACTT
95402 A
1 A
95403 AATTTTTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (34 bp):
ATCATAAAATAAGATTAATTAATTCAACTAACTT
Found at i:96653 original size:21 final size:22
Alignment explanation
Indices: 96628--96709 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 22
96618 ATTTTGGACT
96628 ATCGCAA-CGAACTTGGAATAA
1 ATCGCAACCGAACTTGGAATAA
*
96649 ATCGCAACGCGAACTTGGACT--
1 ATCGCAAC-CGAACTTGGAATAA
*
96670 ATCGCAA-CGAATTTGGAATAA
1 ATCGCAACCGAACTTGGAATAA
*
96691 ATCTCAACGCGAACTTGGA
1 ATCGCAAC-CGAACTTGGA
96710 CTAACGCAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
19 10 0.20
21 20 0.40
23 20 0.40
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (22 bp):
ATCGCAACCGAACTTGGAATAA
Found at i:96680 original size:42 final size:42
Alignment explanation
Indices: 96621--96718 Score: 169
Period size: 42 Copynumber: 2.3 Consensus size: 42
96611 CGTTGCGATT
96621 TTGGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAAC
* *
96663 TTGGACTATCGCAACGAATTTGGAATAAATCTCAACGCGAAC
1 TTGGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAAC
*
96705 TTGGACTAACGCAA
1 TTGGACTATCGCAA
96719 TGCGAATATG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (42 bp):
TTGGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAAC
Found at i:96685 original size:19 final size:19
Alignment explanation
Indices: 96621--96718 Score: 79
Period size: 21 Copynumber: 4.7 Consensus size: 19
96611 CGTTGCGATT
96621 TTGGACTATCGCAACGAAC
1 TTGGACTATCGCAACGAAC
*
96640 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAA--CGAAC
*
96663 TTGGACTATCGCAACGAAT
1 TTGGACTATCGCAACGAAC
* *
96682 TTGGAATAAATCTCAACGCGAAC
1 TTGGACT--ATCGCAA--CGAAC
*
96705 TTGGACTAACGCAA
1 TTGGACTATCGCAA
96719 TGCGAATATG
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
19 16 0.26
21 25 0.40
23 21 0.34
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (19 bp):
TTGGACTATCGCAACGAAC
Found at i:96816 original size:19 final size:19
Alignment explanation
Indices: 96792--96842 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
96782 CGATATCGGA
*
96792 GATCGCGTTGCGAATTATC
1 GATCGCATTGCGAATTATC
96811 GATCGCATTGCGAATTATC
1 GATCGCATTGCGAATTATC
96830 GATCGCATTGCGA
1 GATCGCATTGCGA
96843 TTTAGTTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (19 bp):
GATCGCATTGCGAATTATC
Found at i:97657 original size:22 final size:22
Alignment explanation
Indices: 97616--97657 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
97606 CCCTTAAATA
* *
97616 TATTTATGATTTATAATAAAAG
1 TATTTAAGATTTAGAATAAAAG
*
97638 TATTTAAGATTTAGATTAAA
1 TATTTAAGATTTAGAATAAA
97658 TGGATTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (22 bp):
TATTTAAGATTTAGAATAAAAG
Found at i:100733 original size:16 final size:16
Alignment explanation
Indices: 100712--100751 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
100702 GGATTTTAGA
*
100712 CTCTGGTTGTGGATTT
1 CTCTGGTTGTGGATGT
100728 CTCTGGTTGTGGATGT
1 CTCTGGTTGTGGATGT
100744 CTCTGGTT
1 CTCTGGTT
100752 TCGTCGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.05, C:0.15, G:0.33, T:0.47
Consensus pattern (16 bp):
CTCTGGTTGTGGATGT
Found at i:101800 original size:55 final size:55
Alignment explanation
Indices: 101751--101899 Score: 253
Period size: 55 Copynumber: 2.7 Consensus size: 55
101741 AATCTCTAAG
* ** *
101751 AATCGTGTCTGCTCTCTATTTATTCAGAGAGTATGAGACACGAACAATCTTCAAT
1 AATCTTGTCTGCTCTCTATTCGTTCAGAGAGTATGAGACACGAACAATCTTCAAA
101806 AATCTTGTCTGCTCTCTATTCGTTCAGAGAGTATGAGACACGAACAATCTTCAAA
1 AATCTTGTCTGCTCTCTATTCGTTCAGAGAGTATGAGACACGAACAATCTTCAAA
*
101861 AATCTTGTCTGCTCTCTATTCGTTCAGAGAGTATAAGAC
1 AATCTTGTCTGCTCTCTATTCGTTCAGAGAGTATGAGAC
101900 TCGGACATAT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (55 bp):
AATCTTGTCTGCTCTCTATTCGTTCAGAGAGTATGAGACACGAACAATCTTCAAA
Found at i:102090 original size:54 final size:54
Alignment explanation
Indices: 101920--102750 Score: 1016
Period size: 54 Copynumber: 15.7 Consensus size: 54
101910 TCTTCTTACA
* * **
101920 GGTTCGCTCCCTCTTT-TTCAGGGAGTATGGAACTC-AA-A-AATCTTCAAACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* * *
101970 GGTTCGCTCCCTCTTT-TTTCAGGAAGTATAGAACTCGAACAAC-T-TT-AAACG
1 GGTTCGCTCCCTCTTTCTTTAAGG-AGTATGGAACTCGAACATCTTCTTCAAACG
* * * *
102021 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGAAACTCGAATATCTTCTTCAAATG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
** * *
102075 GGTTCGCTCCCTCTTTCGCTAGGGAGTATAGAACTCGAACATCTTCTT---ACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* * * * *
102126 GGTTTGCTTCTTCTTTCTTTAAGGAGTATGGAACTCGGATATCTTCTTCAAACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* *
102180 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGGACATCTTCTTCAAACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
*
102234 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACAATC-T-TT-AAAAG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAAC-ATCTTCTTCAAACG
* * * *
102286 GGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAAAATCTTCTTCCAACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* *
102340 GGTTCGCTCCTTATTTCTTTAAGGAGTATGGAACTCGAACATC-TCTTCAAACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* * * *
102393 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTGCGAACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* *
102447 GGTTCGCTCCCTCTTTCTTT-AGTTAGTATGGAACTCGGACATCTT-TTCAAACG
1 GGTTCGCTCCCTCTTTCTTTAAG-GAGTATGGAACTCGAACATCTTCTTCAAACG
* * * * **
102500 GGTTCGCTCCCTCTTTATCTAGGGAGTATGGAACTCGAAAATCTTCTTCTTACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
** * *
102554 GGTTCGCTCATTCTTTCTTTAAGGAGTATGAAACTCGAACATC-TCTTCAAATG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* * * * *
102607 GGTTCGCTTCTTCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTGCGAACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
* *
102661 GGTTCGCTCCCTCTTTCTTTAGGGAGTATGGAACTCGAACATCTTCTT-ATTACG
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCA-AACG
*
102715 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTC
1 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTC
102751 TAAACGCAAT
Statistics
Matches: 670, Mismatches: 90, Indels: 38
0.84 0.11 0.05
Matches are distributed among these distances:
50 20 0.03
51 90 0.13
52 53 0.08
53 149 0.22
54 355 0.53
55 3 0.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (54 bp):
GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCAAACG
Found at i:102447 original size:107 final size:107
Alignment explanation
Indices: 101920--102750 Score: 1026
Period size: 107 Copynumber: 7.8 Consensus size: 107
101910 TCTTCTTACA
* * * **
101920 GGTTCGCTCCCTCTTT-TTCAGGGAGTATGGAACTC-AA-AAATCTTCAAACGGGTTCGCTCCCT
1 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATCTCTTCAAACGGGTTCGCTCCCT
* *
101982 CTTT-TTTCAGGAAGTATAGAACTCGAACAA-C-T-TT-AAACG
66 CTTTCTTTAAGG-AGTATGGAACTCGAA-AATCTTCTTCAAACG
* * *
102021 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGAAACTCGAATATCTTCTTCAAATGGGTTCGCTCCC
1 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATC-TCTTCAAACGGGTTCGCTCCC
** * * *
102086 TCTTTCGCTAGGGAGTATAGAACTCGAACATCTTCTT---ACG
65 TCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTTCAAACG
* * * * *
102126 GGTTTGCTTCTTCTTTCTTTAAGGAGTATGGAACTCGGATATCTTCTTCAAACGGGTTCGCTCCT
1 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATC-TCTTCAAACGGGTTCGCTCCC
* *
102191 TCTTTCTTTAAGGAGTATGGAACTCGGACATCTTCTTCAAACG
65 TCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTTCAAACG
* *
102234 GGTTCGCTCCCTCTTTCTTTAAGGAGTATGGAACTCGAACAATCT-TT-AAAAGGGTTCGCTCCC
1 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAAC-ATCTCTTCAAACGGGTTCGCTCCC
* * *
102297 TCTTTCTCTAGGGAGTATGGAACTCGAAAATCTTCTTCCAACG
65 TCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTTCAAACG
* *
102340 GGTTCGCTCCTTATTTCTTTAAGGAGTATGGAACTCGAACATCTCTTCAAACGGGTTCGCTCCTT
1 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATCTCTTCAAACGGGTTCGCTCCCT
* *
102405 CTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTGCGAACG
66 CTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTTCAAACG
* * * *
102447 GGTTCGCTCCCTCTTTCTTT-AGTTAGTATGGAACTCGGACATCTTTTCAAACGGGTTCGCTCCC
1 GGTTCGCTCCTTCTTTCTTTAAG-GAGTATGGAACTCGAACATCTCTTCAAACGGGTTCGCTCCC
* * * **
102511 TCTTTATCTAGGGAGTATGGAACTCGAAAATCTTCTTCTTACG
65 TCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTTCAAACG
* * * * *
102554 GGTTCGCTCATTCTTTCTTTAAGGAGTATGAAACTCGAACATCTCTTCAAATGGGTTCGCTTCTT
1 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATCTCTTCAAACGGGTTCGCTCCCT
* *
102619 CTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTGCGAACG
66 CTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTTCAAACG
* * *
102661 GGTTCGCTCCCTCTTTCTTTAGGGAGTATGGAACTCGAACATCTTCTT-ATTACGGGTTCGCTCC
1 GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATC-TCTTCA-AACGGGTTCGCTCC
*
102725 TTCTTTCTTTAAGGAGTATGGAACTC
64 CTCTTTCTTTAAGGAGTATGGAACTC
102751 TAAACGCAAT
Statistics
Matches: 635, Mismatches: 77, Indels: 29
0.86 0.10 0.04
Matches are distributed among these distances:
101 15 0.02
102 16 0.03
103 2 0.00
104 2 0.00
105 139 0.22
106 98 0.15
107 278 0.44
108 82 0.13
109 3 0.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (107 bp):
GGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATCTCTTCAAACGGGTTCGCTCCCT
CTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTTCAAACG
Found at i:104525 original size:13 final size:11
Alignment explanation
Indices: 104497--104566 Score: 58
Period size: 11 Copynumber: 6.3 Consensus size: 11
104487 TTTATTTCTT
104497 TTCTTTTTTTG
1 TTCTTTTTTTG
104508 TTCTTTTTTTG
1 TTCTTTTTTTG
*
104519 TTATCTTTTTTTA
1 -T-TCTTTTTTTG
104532 TT-TTTTATTT-
1 TTCTTTT-TTTG
104542 TTCTTTTCTTT-
1 TTCTTTT-TTTG
104553 TAT-TTTTTTTG
1 T-TCTTTTTTTG
104564 TTC
1 TTC
104567 ATCTTCAAGA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
10 10 0.20
11 28 0.56
12 3 0.06
13 9 0.18
ACGTcount: A:0.06, C:0.09, G:0.04, T:0.81
Consensus pattern (11 bp):
TTCTTTTTTTG
Found at i:106846 original size:8 final size:7
Alignment explanation
Indices: 106819--106893 Score: 50
Period size: 6 Copynumber: 10.9 Consensus size: 7
106809 TTTTTTTTCA
106819 TTTC-TT
1 TTTCTTT
*
106825 TTTCTCCT
1 TTTCT-TT
106833 TTTCTTCT
1 TTTCTT-T
106841 TTTCTTT
1 TTTCTTT
*
106848 ATTCATTT
1 TTTC-TTT
* *
106856 CTTCTTC
1 TTTCTTT
106863 TTT-TTT
1 TTTCTTT
106869 TTTCTTT
1 TTTCTTT
106876 TTT-TTT
1 TTTCTTT
*
106882 CTT-TTT
1 TTTCTTT
106888 TTTCTT
1 TTTCTT
106894 CGTTTTTCGA
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
6 19 0.35
7 16 0.30
8 19 0.35
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTCTTT
Found at i:106853 original size:34 final size:31
Alignment explanation
Indices: 106809--106892 Score: 100
Period size: 33 Copynumber: 2.7 Consensus size: 31
106799 TTCCTTATTA
106809 TTTTTTTTCATTTCTTTTTCTCCTTTTCTTCT
1 TTTTTTTTCATTTCTTTTTCT-CTTTTCTTCT
* * *
106841 TTTCTTTATTCATTTCTTCTTCTTTTTTTTTCT
1 TTT-TTT-TTCATTTCTTTTTCTCTTTTCTTCT
106874 TTTTTTTTC-TTT-TTTTTCT
1 TTTTTTTTCATTTCTTTTTCT
106893 TCGTTTTTCG
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
29 6 0.13
30 3 0.07
31 3 0.07
32 6 0.13
33 14 0.30
34 14 0.30
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (31 bp):
TTTTTTTTCATTTCTTTTTCTCTTTTCTTCT
Found at i:106899 original size:13 final size:12
Alignment explanation
Indices: 106832--106900 Score: 58
Period size: 11 Copynumber: 6.1 Consensus size: 12
106822 CTTTTTCTCC
106832 TTTTCTTCTTTT
1 TTTTCTTCTTTT
* * *
106844 CTTTATTC-ATT
1 TTTTCTTCTTTT
*
106855 TCTTCTTC-TTT
1 TTTTCTTCTTTT
106866 TTTT-TTC-TTT
1 TTTTCTTCTTTT
106876 TTTT-TTCTTTT
1 TTTTCTTCTTTT
106887 TTTTCTTCGTTTT
1 TTTTCTTC-TTTT
106900 T
1 T
106901 CGAGTGTAGT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
10 13 0.28
11 19 0.41
12 9 0.20
13 5 0.11
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.80
Consensus pattern (12 bp):
TTTTCTTCTTTT
Found at i:106899 original size:19 final size:19
Alignment explanation
Indices: 106864--106901 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
106854 TTCTTCTTCT
**
106864 TTTTTTTTCTTTTTTTTTC
1 TTTTTTTTCTTCGTTTTTC
106883 TTTTTTTTCTTCGTTTTTC
1 TTTTTTTTCTTCGTTTTTC
106902 GAGTGTAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.84
Consensus pattern (19 bp):
TTTTTTTTCTTCGTTTTTC
Found at i:106901 original size:10 final size:9
Alignment explanation
Indices: 106809--106893 Score: 53
Period size: 10 Copynumber: 8.2 Consensus size: 9
106799 TTCCTTATTA
106809 TTTTTTTTC
1 TTTTTTTTC
106818 ATTTCTTTTTC
1 -TTT-TTTTTC
*
106829 TCCTTTTCTTC
1 T--TTTTTTTC
106840 TTTTCTTTATTC
1 -TTT-TTT-TTC
*
106852 ATTTCTTCTTC
1 -TTT-TTTTTC
106863 TTTTTTTTTC
1 -TTTTTTTTC
106873 TTTTTTTTTC
1 -TTTTTTTTC
106883 TTTTTTTTC
1 TTTTTTTTC
106892 TT
1 TT
106894 CGTTTTTCGA
Statistics
Matches: 63, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
9 11 0.17
10 21 0.33
11 19 0.30
12 12 0.19
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:109546 original size:12 final size:13
Alignment explanation
Indices: 109531--109565 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
109521 AAATTAATGC
109531 ATGC-AATGCAAA
1 ATGCAAATGCAAA
109543 ATGCAAATGCAAA
1 ATGCAAATGCAAA
109556 A-GCAAATGCA
1 ATGCAAATGCA
109566 CAAGGTGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 13 0.59
13 9 0.41
ACGTcount: A:0.51, C:0.17, G:0.17, T:0.14
Consensus pattern (13 bp):
ATGCAAATGCAAA
Found at i:109792 original size:21 final size:21
Alignment explanation
Indices: 109748--109884 Score: 177
Period size: 21 Copynumber: 6.6 Consensus size: 21
109738 CATGCGAAGT
* *
109748 GGTCTTCTCGTCTTTACG-AA
1 GGTCTTCTCGTCTTGATGAAA
*
109768 GGTCTTCTCGTCTTTATGAAA
1 GGTCTTCTCGTCTTGATGAAA
*
109789 GGTCTTCTCGTCTTTATGAAA
1 GGTCTTCTCGTCTTGATGAAA
*
109810 GGTCTTCTCGTCTTGATGAAT
1 GGTCTTCTCGTCTTGATGAAA
* *
109831 GGCCTTCTCGTCTTGATGAAT
1 GGTCTTCTCGTCTTGATGAAA
* *
109852 GGCCTTCTCGTCTTGATGAAT
1 GGTCTTCTCGTCTTGATGAAA
*
109873 GGCCTTCTCGTC
1 GGTCTTCTCGTC
109885 CTTGGTACGA
Statistics
Matches: 112, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
20 17 0.15
21 95 0.85
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.40
Consensus pattern (21 bp):
GGTCTTCTCGTCTTGATGAAA
Found at i:109823 original size:42 final size:42
Alignment explanation
Indices: 109751--109884 Score: 198
Period size: 42 Copynumber: 3.2 Consensus size: 42
109741 GCGAAGTGGT
* * * *
109751 CTTCTCGTCTTTACG-AAGGTCTTCTCGTCTTTATGAAAGGT
1 CTTCTCGTCTTTATGAAAGGTCTTCTCGTCTTGATGAATGGC
109792 CTTCTCGTCTTTATGAAAGGTCTTCTCGTCTTGATGAATGGC
1 CTTCTCGTCTTTATGAAAGGTCTTCTCGTCTTGATGAATGGC
* * *
109834 CTTCTCGTCTTGATGAATGGCCTTCTCGTCTTGATGAATGGC
1 CTTCTCGTCTTTATGAAAGGTCTTCTCGTCTTGATGAATGGC
109876 CTTCTCGTC
1 CTTCTCGTC
109885 CTTGGTACGA
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
41 14 0.16
42 71 0.84
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.40
Consensus pattern (42 bp):
CTTCTCGTCTTTATGAAAGGTCTTCTCGTCTTGATGAATGGC
Found at i:113080 original size:18 final size:18
Alignment explanation
Indices: 113044--113080 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
113034 TATACAGACA
* *
113044 CAAACCTCAACCTTTCAC
1 CAAACCTCAACCCTACAC
113062 CAAACCTCAACCCTACAC
1 CAAACCTCAACCCTACAC
113080 C
1 C
113081 TCTCAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.49, G:0.00, T:0.16
Consensus pattern (18 bp):
CAAACCTCAACCCTACAC
Found at i:113416 original size:16 final size:16
Alignment explanation
Indices: 113395--113434 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
113385 GGATTTTAGA
*
113395 CTCTGGTTGTGGATTT
1 CTCTGGTTGTGGATGT
113411 CTCTGGTTGTGGATGT
1 CTCTGGTTGTGGATGT
113427 CTCTGGTT
1 CTCTGGTT
113435 TCGTCGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.05, C:0.15, G:0.33, T:0.47
Consensus pattern (16 bp):
CTCTGGTTGTGGATGT
Found at i:117584 original size:21 final size:21
Alignment explanation
Indices: 117559--117604 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
117549 AGATTGAATC
117559 CATAACTTTGCAATAAAGTAT
1 CATAACTTTGCAATAAAGTAT
117580 CATAACTTTGCAATAAAGTAT
1 CATAACTTTGCAATAAAGTAT
117601 CATA
1 CATA
117605 TCTTGTAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (21 bp):
CATAACTTTGCAATAAAGTAT
Found at i:118086 original size:36 final size:36
Alignment explanation
Indices: 118017--118127 Score: 110
Period size: 37 Copynumber: 3.2 Consensus size: 36
118007 TCCCATTATC
* * *
118017 ATTTTTCAACAAACATCTACCAAAATTTAAAAAACT
1 ATTTTTCAAGAAACATTTACCAAACTTTAAAAAACT
*
118053 ATTTTTCAAAGAAACATTTACCAAACTTT-AAAAACC
1 ATTTTTC-AAGAAACATTTACCAAACTTTAAAAAACT
* *
118089 A-TTTTC-A-AAA-A-TTACCAAACTTTGAAAATCT
1 ATTTTTCAAGAAACATTTACCAAACTTTAAAAAACT
118120 -TTTTTCAA
1 ATTTTTCAA
118128 AGTTGGTTGC
Statistics
Matches: 65, Mismatches: 6, Indels: 12
0.78 0.07 0.14
Matches are distributed among these distances:
30 12 0.18
31 11 0.17
32 4 0.06
33 1 0.02
35 5 0.08
36 14 0.22
37 18 0.28
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (36 bp):
ATTTTTCAAGAAACATTTACCAAACTTTAAAAAACT
Done.