genome.fa.s1645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001645.1 Hibiscus syriacus cultivar Beakdansim tig00003294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88084

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7611--7664	14	3.8	14	80	2	54	50	9	14	25	1.73
10228--10278	19	2.5	19	84	12	57	64	1	3	29	1.22
11001--11032	15	2.1	15	94	0	55	0	21	0	78	0.76
11087--11123	19	1.9	19	89	10	58	5	24	10	59	1.52
11533--11643	3	37.0	3	87	0	159	60	0	0	38	1.03
14353--14444	3	31.0	3	71	18	50	58	0	0	41	0.98
14351--14480	8	15.5	8	70	20	88	55	0	0	43	1.05
14351--14454	31	3.3	31	87	6	138	56	0	0	43	0.99
14361--14489	35	3.7	36	77	17	98	55	0	0	44	1.05
17298--17425	60	2.1	60	80	5	143	34	21	5	38	1.77
18231--18255	13	1.9	13	100	0	50	40	0	0	60	0.97
18237--18302	35	1.9	33	85	11	89	51	0	3	45	1.16
18270--18332	23	2.8	22	76	9	65	52	0	0	47	1.00
18270--18332	22	2.8	21	80	9	63	52	0	0	47	1.00
19051--19090	21	1.9	21	85	10	55	62	2	0	35	1.09
19080--19122	22	1.9	23	90	4	70	48	0	0	51	1.00
19128--19161	17	2.0	17	88	0	50	44	2	0	52	1.16
19261--19319	30	2.0	29	83	9	75	52	1	1	44	1.21
25582--25715	59	2.2	60	88	1	189	34	15	17	32	1.91
27900--27924	12	2.1	12	100	0	50	48	0	0	52	1.00
27915--27971	25	2.2	26	84	3	71	43	1	1	52	1.21
31700--31805	37	3.0	37	63	20	100	46	13	13	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31604--31805	68	3.0	68	82	9	299	48	11	12	27	1.76
32563--32625	2	32.0	2	73	20	53	50	1	3	44	1.27
32662--32787	30	4.0	31	76	5	119	57	7	14	21	1.61
32662--32787	33	4.0	33	76	13	131	57	7	14	21	1.61
32977--33024	17	2.7	17	77	6	51	64	2	6	27	1.28
34987--35035	3	16.0	3	78	4	53	30	2	2	65	1.15
34987--35023	19	1.9	19	88	0	56	29	2	2	64	1.21
36647--36691	12	3.6	13	80	13	51	35	2	2	60	1.22
40650--40834	100	1.9	100	86	2	264	35	21	20	22	1.96
41829--41946	36	3.2	36	79	4	139	22	20	14	43	1.87
51529--51599	22	3.2	22	100	0	142	26	18	14	40	1.88
52007--52047	15	2.6	16	84	11	57	26	0	0	73	0.84
58357--58725	20	18.5	20	85	4	458	34	26	18	20	1.96
59399--59445	24	2.0	24	87	8	69	25	14	21	38	1.92
59620--59644	12	2.1	12	100	0	50	72	0	28	0	0.86
61951--62257	19	17.4	19	79	16	358	47	18	20	14	1.83
61979--62257	52	5.2	53	90	5	358	47	17	20	14	1.83
62018--62257	71	3.4	71	83	11	355	47	17	20	15	1.83
61951--62289	142	2.4	137	89	6	497	46	18	20	14	1.83
62286--62387	19	5.6	19	85	12	151	14	23	17	44	1.86
62494--62530	14	2.6	14	91	0	65	45	21	0	32	1.52
62525--62597	12	6.0	12	67	20	53	57	16	1	24	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62511--62583	38	1.9	38	97	0	137	53	16	1	28	1.51
64455--64511	14	3.7	14	77	20	60	45	22	21	10	1.82
64436--64528	33	2.8	33	95	0	168	47	21	20	10	1.80
64399--64533	19	7.6	19	76	16	128	45	23	19	11	1.82
64529--64657	19	7.3	19	75	17	125	8	17	28	45	1.77
64529--64620	33	2.8	33	93	3	150	7	18	28	45	1.76
64701--65080	93	4.1	93	99	0	753	46	18	12	22	1.83
64701--65080	185	2.0	186	99	0	753	46	18	12	22	1.83
66786--66875	14	5.7	14	74	23	81	42	23	25	8	1.83
66778--66892	33	3.5	33	95	0	212	45	20	24	9	1.81
66785--66897	19	6.8	18	72	23	88	43	22	24	9	1.83
66909--66963	14	3.6	14	73	21	56	9	27	23	40	1.85
67084--67154	33	2.2	33	92	0	115	47	18	22	11	1.80
67336--67390	22	2.5	22	81	0	74	20	16	40	23	1.91
67536--67729	20	9.6	20	82	5	221	19	19	25	35	1.95
67536--67729	60	3.2	60	83	0	253	19	19	25	35	1.95
67722--67799	21	3.7	20	70	16	59	26	16	23	33	1.96
67785--67836	20	2.6	20	96	0	95	21	13	26	38	1.90
72208--72253	21	2.2	21	84	3	58	34	4	10	50	1.57
72810--73427	210	3.0	208	85	4	763	33	21	13	32	1.92
83761--83791	2	15.5	2	100	0	62	48	0	0	51	1.00
84941--85022	22	3.7	22	81	12	96	32	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85293--85340	17	2.7	18	78	9	53	22	27	20	29	1.99
87397--87423	3	9.0	3	100	0	54	66	0	33	0	0.92
87883--87936	2	27.5	2	92	3	92	50	1	0	48	1.11

Tables:   1

The End!