Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001647.1 Hibiscus syriacus cultivar Beakdansim tig00003296_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85464

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3433--3491
29
2.1
29
93
3
102
27
16
10
45
1.80
20382--20445
31
2.1
31
90
0
101
48
7
9
34
1.64
23961--24022
23
2.5
24
76
10
63
51
3
0
45
1.17
23961--24035
24
3.0
24
76
11
71
52
2
0
45
1.15
24090--24221
43
3.1
43
66
27
127
43
0
6
50
1.32
24102--24237
43
3.2
42
66
25
115
43
0
5
50
1.32
24054--24335
84
3.3
86
93
5
448
45
1
6
47
1.36
24305--24360
23
2.4
23
81
3
58
46
1
1
50
1.22
24343--24401
12
5.2
12
73
17
54
49
1
0
49
1.11
24350--24401
24
2.3
22
86
6
68
50
1
0
48
1.12
24482--24560
31
2.5
30
84
10
88
46
0
2
50
1.14
26216--26258
24
1.9
21
86
13
59
44
0
4
51
1.22
31948--32073
33
3.8
33
83
4
146
18
24
21
35
1.95
43215--43259
21
2.1
21
84
8
56
31
26
24
17
1.97
44631--44658
14
2.0
14
100
0
56
28
7
28
35
1.84
44759--45073
149
2.1
149
92
1
524
26
17
21
33
1.96
45041--45085
23
2.0
23
90
0
72
22
26
26
24
2.00
48245--48289
21
2.1
21
87
0
63
31
28
24
15
1.96
49669--49696
14
2.0
14
100
0
56
28
7
28
35
1.84
49930--49974
23
2.0
23
90
0
72
22
26
26
24
2.00
58788--58844
30
1.9
30
92
0
96
36
21
12
29
1.90
61909--61979
37
1.9
37
82
5
90
50
5
4
39
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67614--67664
3
17.7
3
82
8
52
39
0
0
60
0.97
67629--67674
22
2.0
23
95
4
85
47
0
0
52
1.00
69018--69059
20
2.2
19
86
4
57
33
0
2
64
1.07
68914--69150
120
2.0
117
81
4
280
37
8
8
46
1.63
69115--69171
29
2.0
29
86
6
80
47
1
0
50
1.11
72138--72178
15
2.9
14
80
20
57
21
12
7
58
1.58
77033--77253
114
1.9
114
92
0
370
32
14
21
31
1.94
79270--79427
54
3.0
53
83
7
205
35
16
23
24
1.95
79270--79423
50
3.0
50
87
3
191
35
16
23
25
1.95
80505--80716
76
2.8
76
97
0
397
24
19
21
35
1.96
80842--81057
45
4.8
45
91
0
351
25
22
19
32
1.97
81000--81279
76
3.7
76
95
0
506
24
18
21
35
1.96
81427--81499
3
24.7
3
84
8
87
38
1
0
60
1.06
81445--81509
22
3.0
22
76
15
82
43
1
0
55
1.09
83070--83111
20
2.2
19
86
4
57
33
0
2
64
1.07
83166--83218
27
2.0
25
85
7
70
45
1
0
52
1.11

Tables:   1

The End!